pycom04g18990

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0010961
Physical Location & Seq
Reverse (-)
20818067 .. 20819287
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18990.1

Sequence Viewer

Length: 699 bp
ATGGTCACCCAATGGGCCAATTCTTCCATACCCACACCAAGCCCATATTCTATAAGCCCAATAATCCACTCTCAGAATCTATTTTCTTTGTTTGTTTTTTTTATGAAAAAAAATCAATTTACAAAGAAAATCTCAGAAAATACAGAGAGAGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGAGAGAGGTCTCAGAGAGCTGCGTGGATAGTCTACTGACAGAGATGGTCTCTATGTACTGCAATCGGTTATACGCCAACAAGCCCGAGCTCGCCGCCAGTACGATCGACGCTATTGGCTACCAGGTCGGCCACCAGCTCTCCGAGCGGTACACGATGGAGCGGCCTCGGTTTACTGATCATCTGGATGCAATTAAGTTCATCTGCAAGGACTTTTGGTCCGAGCTCTTCAAGAAGCAGATTGACAACTTAAAGACCAATCATAGGGGTACTTTTGTATTGCAAGATAATCGGTTTCGTTGGGTTTCACGCATGTCACTCGGTCCTTCCGAAAATGGTGACTTGTCTCAAGAAAATGCCGAGGCGGCTGAAAACAAGGCAGCAGAAGAACCAAACATGCATCTCCATTTCTCATGTGGAGTCATAAAGGGTGCTCTTCATAACTTGGGGATTGCTTGTGCTGTTTCTGCCGACACATCCCACCTTCCTGCGTGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

233

Amino Acids

26.64

Weight (kDa)

6.72

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 76 - 227 1e-38 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 346, 361
AccI GTMKAC 1 cut(s) 232
AccII CGCG 1 cut(s) 154
AciI CCGC 4 cut(s) 294, 346, 361, 563
AcoI YGGCCR 1 cut(s) 328
AfaI GTAC 4 cut(s) 257, 301, 350, 469
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 1 cut(s) 430
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 321
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 4 cut(s) 219, 289, 337, 424
AluI AGCT 4 cut(s) 219, 289, 337, 424
Alw21I GWGCWC 3 cut(s) 291, 426, 634
Alw26I GTCTC 3 cut(s) 214, 253, 549
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 3 cut(s) 15, 328, 362
ApeKI GCWGC 2 cut(s) 219, 578
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 15, 417, 521
AsuHPI GGTGA 1 cut(s) 548
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 2 cut(s) 417, 521
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanII GRGCYC 2 cut(s) 291, 426
Bbv12I GWGCWC 3 cut(s) 291, 426, 634
BbvI GCAGC 2 cut(s) 206, 590
BccI CCATC 3 cut(s) 190, 238, 349
BcgI CGANNNNNNTGC 4 cut(s) 470, 499, 504, 533
BciT130I CCWGG 1 cut(s) 323
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 214, 253, 549
BglI GCCNNNNNGGC 1 cut(s) 563
BisI GCNGC 5 cut(s) 220, 294, 362, 564, 579
BlsI GCNGC 5 cut(s) 221, 295, 363, 565, 580
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 417, 521
BmeRI GACNNNNNGTC 1 cut(s) 415
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 15, 417, 521
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 376, 607
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpuEI CTTGAG 1 cut(s) 531
BsaI GGTCTC 2 cut(s) 214, 253
BsaJI CCNNGG 2 cut(s) 365, 558
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 365, 558
BseGI GGATG 2 cut(s) 391, 674
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 86, 147, 225
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 206, 590
Bsh1236I CGCG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 17, 330, 364
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 291, 426, 634
BsiHKCI CYCGRG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 3 cut(s) 214, 253, 549
BsnI GGCC 3 cut(s) 17, 330, 364
Bso31I GGTCTC 2 cut(s) 214, 253
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 291, 426, 634
Bsp143I GATC 2 cut(s) 303, 376
BspACI CCGC 4 cut(s) 294, 346, 361, 563
BspANI GGCC 3 cut(s) 17, 330, 364
BspCNI CTCAG 3 cut(s) 85, 146, 224
BspFNI CGCG 1 cut(s) 154
BspQI GCTCTTC 2 cut(s) 431, 639
BspTNI GGTCTC 2 cut(s) 214, 253
BsrBI CCGCTC 2 cut(s) 346, 361
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 365, 558
BssMI GATC 2 cut(s) 303, 376
Bst2UI CCWGG 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 431, 639
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 72, 133, 211
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 391, 674
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 306, 379
BstMAI GTCTC 3 cut(s) 214, 253, 549
BstMBI GATC 2 cut(s) 303, 376
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 3 cut(s) 343, 563, 665
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 514, 598
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 321
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 206, 590
BsuRI GGCC 3 cut(s) 17, 330, 364
BtsCI GGATG 2 cut(s) 391, 674
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 15, 417, 521
CseI GACGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 4 cut(s) 256, 300, 349, 468
CviAII CATG 3 cut(s) 511, 595, 612
CviQI GTAC 4 cut(s) 256, 300, 349, 468
DdeI CTNAG 3 cut(s) 72, 133, 211
DpnI GATC 2 cut(s) 305, 378
DpnII GATC 2 cut(s) 303, 376
DriI GACNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 2 cut(s) 431, 639
Eam1105I GACNNNNNGTC 1 cut(s) 415
EarI CTCTTC 2 cut(s) 431, 639
Ecl136II GAGCTC 2 cut(s) 289, 424
Eco24I GRGCYC 2 cut(s) 291, 426
Eco31I GGTCTC 2 cut(s) 214, 253
Eco47I GGWCC 2 cut(s) 417, 521
Eco53kI GAGCTC 2 cut(s) 289, 424
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 2 cut(s) 289, 424
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 291, 426
FaeI CATG 3 cut(s) 514, 598, 615
FatI CATG 3 cut(s) 510, 594, 611
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 5 cut(s) 220, 294, 362, 564, 579
FokI GGATG 2 cut(s) 398, 661
FriOI GRGCYC 2 cut(s) 291, 426
Fsp4HI GCNGC 5 cut(s) 220, 294, 362, 564, 579
GlaI GCGC 1 cut(s) 153
GluI GCNGC 5 cut(s) 220, 294, 362, 564, 579
HaeIII GGCC 3 cut(s) 17, 330, 364
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 154
Hin1II CATG 3 cut(s) 514, 598, 615
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 2 cut(s) 76, 618
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 3 cut(s) 233, 351, 372
Hpy188I TCNGA 6 cut(s) 75, 136, 214, 343, 421, 529
Hpy188III TCNNGA 3 cut(s) 383, 430, 548
Hpy8I GTNNAC 3 cut(s) 233, 351, 372
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 534, 692
HpyCH4V TGCA 5 cut(s) 261, 389, 405, 481, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 343, 563, 665
HpyF3I CTNAG 3 cut(s) 72, 133, 211
Hsp92II CATG 3 cut(s) 514, 598, 615
HspAI GCGC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 2 cut(s) 303, 376
LguI GCTCTTC 2 cut(s) 431, 639
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 5 cut(s) 308, 310, 335, 347, 368
Lsp1109I GCAGC 2 cut(s) 206, 590
LweI GCATC 2 cut(s) 376, 607
MabI ACCWGGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 4, 513, 536
MalI GATC 2 cut(s) 305, 378
MbiI CCGCTC 2 cut(s) 346, 361
MboI GATC 2 cut(s) 303, 376
MboII GAAGA 4 cut(s) 15, 418, 596, 626
MhlI GDGCHC 3 cut(s) 291, 426, 634
MluCI AATT 3 cut(s) 19, 116, 390
MlyI GAGTC 1 cut(s) 627
MnlI CCTC 3 cut(s) 199, 375, 553
Mph1103I ATGCAT 1 cut(s) 600
MseI TTAA 2 cut(s) 393, 449
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 343, 563, 665
NdeII GATC 2 cut(s) 303, 376
NlaIII CATG 3 cut(s) 514, 598, 615
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 3 cut(s) 4, 513, 536
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 2 cut(s) 514, 598
PciSI GCTCTTC 2 cut(s) 431, 639
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 5 cut(s) 221, 295, 363, 565, 580
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Psp124BI GAGCTC 2 cut(s) 291, 426
Psp6I CCWGG 1 cut(s) 321
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 3 cut(s) 15, 417, 521
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 4 cut(s) 257, 301, 350, 469
RsaNI GTAC 4 cut(s) 256, 300, 349, 468
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 2 cut(s) 291, 426
SapI GCTCTTC 2 cut(s) 431, 639
SaqAI TTAA 2 cut(s) 393, 449
SatI GCNGC 5 cut(s) 220, 294, 362, 564, 579
Sau3AI GATC 2 cut(s) 303, 376
Sau96I GGNCC 3 cut(s) 15, 417, 521
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 3 cut(s) 291, 426, 634
SetI ASST 7 cut(s) 210, 221, 291, 327, 339, 426, 684
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 2 cut(s) 376, 607
SinI GGWCC 2 cut(s) 417, 521
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 3 cut(s) 19, 116, 390
SsiI CCGC 4 cut(s) 294, 346, 361, 563
SstI GAGCTC 2 cut(s) 291, 426
StyD4I CCNGG 1 cut(s) 321
TaqI TCGA 1 cut(s) 306
TaqII GACCGA 1 cut(s) 509
TasI AATT 3 cut(s) 19, 116, 390
TatI WGTACW 1 cut(s) 255
TauI GCSGC 3 cut(s) 296, 364, 566
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 393, 449
Tru9I TTAA 2 cut(s) 393, 449
TseFI GTSAC 3 cut(s) 4, 513, 536
TseI GCWGC 2 cut(s) 219, 578
Tsp45I GTSAC 3 cut(s) 4, 513, 536
TspDTI ATGAA 3 cut(s) 119, 388, 626
VpaK11BI GGWCC 2 cut(s) 417, 521
XceI RCATGY 2 cut(s) 514, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 232
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.