MD12G1229300.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0010961
Physical Location & Seq
Reverse (-)
30470990 .. 30473527
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1229300.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGGGAGGGAGGTATCAGAGAGCTGCGTGGATAGTCTACTAACAGAGATGGTCTCCATGTACTGCAATCGGTTATACGCCAACAAGCCCGAGCTCGCCGCCAGTAGGATCGACGCTATTGGCTACCAGGTCGGCCACCAGCTCTCCGAGCGGTACACGATGGAGCGGCCTCGGTTTACTGATCATCTGGATGCAATTAAGTTCATCTGCAAGGACTTCTGGTCCGAGCTCTTCAAGAAGCAGATTGACAACTTAAAGACGAATCATAGAGGTACTTTTGTATTGCAAGATAATCGATTTCGTTGGGTTTCACGCATGTCACTTGATCCTTCCGAGAATGGAGACTTGTCTCAAGAAAATGCTGAGGCGGCTGAAAACAAGGCAGCACAAGAACCAAACATGCATCTCCATTTCTCGTGTGGAGTCATAAAAGGGGCTCTTCATAACTTGGGGATTGCTTGTGCCGTTTCTGCTGACCCGTCCCAACTTCCTGCATGTTCATTCGTGGTTCGTATAAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

175

Amino Acids

19.67

Weight (kDa)

6.3

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 11 - 173 6.9e-41 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 151, 166
AccI GTMKAC 1 cut(s) 37
AciI CCGC 4 cut(s) 99, 151, 166, 368
AclWI GGATC 2 cut(s) 116, 320
AcoI YGGCCR 1 cut(s) 133
AfaI GTAC 3 cut(s) 62, 155, 274
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 235
AhdI GACNNNNNGTC 1 cut(s) 220
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 24, 94, 142, 229
AluI AGCT 4 cut(s) 24, 94, 142, 229
Alw21I GWGCWC 2 cut(s) 96, 231
Alw26I GTCTC 3 cut(s) 58, 336, 354
AlwI GGATC 2 cut(s) 116, 320
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 2 cut(s) 133, 167
ApeKI GCWGC 2 cut(s) 24, 383
AspS9I GGNCC 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanII GRGCYC 3 cut(s) 96, 231, 439
BauI CACGAG 1 cut(s) 415
Bbv12I GWGCWC 2 cut(s) 96, 231
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 11, 395
BccI CCATC 2 cut(s) 43, 154
BceAI ACGGC 1 cut(s) 449
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 58, 336, 354
BisI GCNGC 5 cut(s) 25, 99, 167, 369, 384
BlsI GCNGC 5 cut(s) 26, 100, 168, 370, 385
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 181, 412
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 11, 395
BshFI GGCC 2 cut(s) 135, 169
BshVI ATCGAT 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 96, 231
BsiHKCI CYCGRG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 3 cut(s) 58, 336, 354
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 2 cut(s) 135, 169
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 3 cut(s) 96, 231, 439
Bsp143I GATC 3 cut(s) 108, 181, 325
BspACI CCGC 4 cut(s) 99, 151, 166, 368
BspANI GGCC 2 cut(s) 135, 169
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 295
BspPI GGATC 2 cut(s) 116, 320
BspQI GCTCTTC 2 cut(s) 236, 444
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 2 cut(s) 151, 166
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 3 cut(s) 108, 181, 325
BssSI CACGAG 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 236, 444
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 111, 184, 328
BstMAI GTCTC 3 cut(s) 58, 336, 354
BstMBI GATC 3 cut(s) 108, 181, 325
BstMWI GCNNNNNNNGC 3 cut(s) 148, 368, 470
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 3 cut(s) 319, 403, 498
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 11, 395
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 2 cut(s) 135, 169
BsuTUI ATCGAT 1 cut(s) 295
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 295
CseI GACGC 1 cut(s) 122
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 61, 154, 273
CviAII CATG 4 cut(s) 58, 316, 400, 495
CviQI GTAC 3 cut(s) 61, 154, 273
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 110, 183, 327
DpnII GATC 3 cut(s) 108, 181, 325
DriI GACNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 236, 444
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 2 cut(s) 236, 444
Ecl136II GAGCTC 2 cut(s) 94, 229
Eco24I GRGCYC 3 cut(s) 96, 231, 439
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 2 cut(s) 94, 229
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 2 cut(s) 94, 229
EcoRII CCWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 405
EcoT38I GRGCYC 3 cut(s) 96, 231, 439
FaeI CATG 4 cut(s) 61, 319, 403, 498
FaiI YATR 9 cut(s) 59, 76, 267, 317, 401, 428, 444, 496, 515
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 57, 315, 399, 494
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 25, 99, 167, 369, 384
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 3 cut(s) 96, 231, 439
Fsp4HI GCNGC 5 cut(s) 25, 99, 167, 369, 384
GluI GCNGC 5 cut(s) 25, 99, 167, 369, 384
HaeIII GGCC 2 cut(s) 135, 169
HgaI GACGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 61, 319, 403, 498
HinfI GANTC 2 cut(s) 262, 423
Hpy166II GTNNAC 3 cut(s) 38, 156, 177
Hpy188I TCNGA 4 cut(s) 19, 148, 226, 334
Hpy188III TCNNGA 3 cut(s) 188, 235, 353
Hpy8I GTNNAC 3 cut(s) 38, 156, 177
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 6 cut(s) 66, 194, 210, 286, 403, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 368, 470
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 4 cut(s) 61, 319, 403, 498
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 3 cut(s) 108, 181, 325
LguI GCTCTTC 2 cut(s) 236, 444
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 7 cut(s) 113, 115, 140, 152, 173, 205, 504
Lsp1109I GCAGC 2 cut(s) 11, 395
LweI GCATC 2 cut(s) 181, 412
MabI ACCWGGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 110, 183, 327
MbiI CCGCTC 2 cut(s) 151, 166
MboI GATC 3 cut(s) 108, 181, 325
MboII GAAGA 2 cut(s) 223, 431
MhlI GDGCHC 3 cut(s) 96, 231, 439
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 4 cut(s) 4, 180, 263, 358
Mph1103I ATGCAT 1 cut(s) 405
MseI TTAA 2 cut(s) 198, 254
MslI CAYNNNNRTG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 148, 368, 470
NdeII GATC 3 cut(s) 108, 181, 325
NlaIII CATG 4 cut(s) 61, 319, 403, 498
NmuCI GTSAC 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 3 cut(s) 319, 403, 498
PciSI GCTCTTC 2 cut(s) 236, 444
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 5 cut(s) 26, 100, 168, 370, 385
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Psp124BI GAGCTC 2 cut(s) 96, 231
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspPI GGNCC 1 cut(s) 222
RsaI GTAC 3 cut(s) 62, 155, 274
RsaNI GTAC 3 cut(s) 61, 154, 273
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 2 cut(s) 96, 231
SapI GCTCTTC 2 cut(s) 236, 444
SaqAI TTAA 2 cut(s) 198, 254
SatI GCNGC 5 cut(s) 25, 99, 167, 369, 384
Sau3AI GATC 3 cut(s) 108, 181, 325
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 3 cut(s) 96, 231, 439
SetI ASST 7 cut(s) 15, 26, 96, 132, 144, 231, 274
SexAI ACCWGGT 1 cut(s) 126
SfaNI GCATC 2 cut(s) 181, 412
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 1 cut(s) 195
SsiI CCGC 4 cut(s) 99, 151, 166, 368
SstI GAGCTC 2 cut(s) 96, 231
StyD4I CCNGG 1 cut(s) 126
TaqI TCGA 2 cut(s) 111, 295
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 60
TauI GCSGC 3 cut(s) 101, 169, 371
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 198, 254
Tru9I TTAA 2 cut(s) 198, 254
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 2 cut(s) 24, 383
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 3 cut(s) 193, 431, 489
VpaK11BI GGWCC 1 cut(s) 222
XceI RCATGY 3 cut(s) 319, 403, 498
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 37
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.