Rorug02G0643800

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Forward (+)
75495026 .. 75498938
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0643800.1

Sequence Viewer

Length: 909 bp
ATGGAGAGCATCCATACCTATTGGCAGTTGGGTGATGAGCTTCGTGGACAGTCGAAAGTTGCAGAGGATCACAAATGGTTAATGGTTGCTTCCAAATTGGCTGAGCAAACGAGGTCAAAGGGCGAGCGCATGAATAACCTTGATCTTTCAAAGGGCCCAACTGAAACAAGGGCAAGGGACAAATTTGGGTTCCAGGAAGATAACAAATTTGAAAGCCTTAACTTTAACATGTTGAACTTGGACTCAAAAGTAAATGAAAATGTGAGCAAGAGTTCCTTTAGGAATGGGATTTACAACATGAATGCAGTTTACCAGAAAAACAGTGCAAGCTTTGTGGGGAACATGACTGGTAACAAGTACAATGGCAATCACCTCAGCAACAAGGAAACCAACAACAGCGGTAATAACAACAACAACAACAACAACGAAACTGGGAATGTTGTTGAGAAAAGGTTCAAGACCTTGCCTGCAACTGAGACACTTCCCCGAAATGAGGTGCTTGGAGGTTACATCTTTGTATGCAACAATGACACAATGCAGGAAGATTTGAAGCGACAACTATTCGGTTTACCTCCAAGGTACAGGGATTCTGTTCGGGCAATTACACCTGGCTTGCCTCTGTTTCTCTACAACTATACAACCCACCAATTGCATGGCATTTTTGAGGCATCAAGCTTTGGTGGTTCAAACATTGATCCAACTGCTTGGGAAGACAAGAAATGTAAAGGCGAGTCAAGGTTTCCTGCGCAGGTAAGGATCCGTGTTAGAAAAATCTGCAAGGCTCTGGAAGAAGATTCCTTCAGGCCAGTCTTGCATCACTATGATGGTCCAAAGTTCCGTCTTGAGTTGTCAGTTCCCGAGACCCTGGATCTATTGGACCTATGTGAGCAAGCCGGCTCTGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

302

Amino Acids

34.31

Weight (kDa)

7.68

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 168 - 294 1.3e-39 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 747
Acc36I ACCTGC 1 cut(s) 739
AciI CCGC 1 cut(s) 399
AclWI GGATC 5 cut(s) 75, 689, 751, 764, 876
AcsI RAATTY 2 cut(s) 182, 206
AcuI CTGAAG 1 cut(s) 784
AfaI GTAC 2 cut(s) 359, 581
AfiI CCNNNNNNNGG 1 cut(s) 493
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 6 cut(s) 150, 212, 235, 457, 550, 687
AjnI CCWGG 3 cut(s) 192, 607, 864
AluBI AGCT 3 cut(s) 40, 330, 675
AluI AGCT 3 cut(s) 40, 330, 675
Alw26I GTCTC 2 cut(s) 470, 854
AlwI GGATC 5 cut(s) 75, 689, 751, 764, 876
Ama87I CYCGRG 1 cut(s) 857
AoxI GGCC 2 cut(s) 154, 803
ApaI GGGCCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 2 cut(s) 182, 206
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 129, 748
AspS9I GGNCC 4 cut(s) 154, 155, 827, 877
AsuHPI GGTGA 2 cut(s) 44, 362
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 2 cut(s) 827, 877
BaeGI GKGCMC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 756
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 717
BbvCI CCTCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 818
BciT130I CCWGG 3 cut(s) 194, 609, 866
BcoDI GTCTC 2 cut(s) 470, 854
BfmI CTRYAG 1 cut(s) 900
BfuAI ACCTGC 1 cut(s) 739
BisI GCNGC 1 cut(s) 903
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 194, 609, 866
Bme18I GGWCC 2 cut(s) 827, 877
BmeT110I CYCGRG 1 cut(s) 857
BmgT120I GGNCC 4 cut(s) 154, 155, 827, 877
BmiI GGNNCC 3 cut(s) 156, 191, 758
BmrFI CCNGG 3 cut(s) 194, 609, 866
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 18, 677, 823
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 2 cut(s) 575, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 3 cut(s) 352, 436, 806
BseBI CCWGG 3 cut(s) 194, 609, 866
BseDI CCNNGG 2 cut(s) 575, 864
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 3 cut(s) 93, 388, 465
BseNI ACTGG 3 cut(s) 352, 436, 806
BseSI GKGCMC 1 cut(s) 158
BshFI GGCC 2 cut(s) 156, 805
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 1 cut(s) 894
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 2 cut(s) 470, 854
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 2 cut(s) 156, 805
Bso31I GGTCTC 1 cut(s) 854
BsoBI CYCGRG 1 cut(s) 857
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 5 cut(s) 67, 142, 694, 756, 868
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 156, 805
BspCNI CTCAG 3 cut(s) 94, 387, 466
BspLI GGNNCC 3 cut(s) 156, 191, 758
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 5 cut(s) 75, 689, 751, 764, 876
BspTNI GGTCTC 1 cut(s) 854
BsrFI RCCGGY 1 cut(s) 893
BsrI ACTGG 3 cut(s) 352, 436, 806
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 2 cut(s) 575, 864
BssMI GATC 5 cut(s) 67, 142, 694, 756, 868
BssT1I CCWWGG 1 cut(s) 575
Bst2UI CCWGG 3 cut(s) 194, 609, 866
Bst4CI ACNGT 2 cut(s) 51, 323
BstC8I GCNNGC 6 cut(s) 125, 328, 468, 614, 891, 895
BstDEI CTNAG 3 cut(s) 102, 374, 474
BstF5I GGATG 1 cut(s) 9
BstHHI GCGC 2 cut(s) 129, 748
BstKTI GATC 5 cut(s) 70, 145, 697, 759, 871
BstMAI GTCTC 2 cut(s) 470, 854
BstMBI GATC 5 cut(s) 67, 142, 694, 756, 868
BstMWI GCNNNNNNNGC 2 cut(s) 811, 899
BstNI CCWGG 3 cut(s) 194, 609, 866
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 192, 607, 864
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 2 cut(s) 756, 868
BstXI CCANNNNNNTGG 2 cut(s) 653, 705
BstYI RGATCY 2 cut(s) 756, 868
BsuRI GGCC 2 cut(s) 156, 805
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 6 cut(s) 125, 328, 468, 614, 891, 895
CfoI GCGC 2 cut(s) 129, 748
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 4 cut(s) 154, 155, 827, 877
Csp6I GTAC 2 cut(s) 358, 580
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 5 cut(s) 130, 229, 298, 343, 653
CviQI GTAC 2 cut(s) 358, 580
DdeI CTNAG 3 cut(s) 102, 374, 474
DpnI GATC 5 cut(s) 69, 144, 696, 758, 870
DpnII GATC 5 cut(s) 67, 142, 694, 756, 868
Eco130I CCWWGG 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 854
Eco47I GGWCC 2 cut(s) 827, 877
Eco57I CTGAAG 1 cut(s) 784
Eco88I CYCGRG 1 cut(s) 857
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 192, 607, 864
EcoT14I CCWWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 5 cut(s) 133, 232, 301, 346, 656
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 1 cut(s) 191
FatI CATG 5 cut(s) 129, 228, 297, 342, 652
Fnu4HI GCNGC 1 cut(s) 903
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 903
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 2 cut(s) 128, 747
GluI GCNGC 1 cut(s) 903
HaeIII GGCC 2 cut(s) 156, 805
HapII CCGG 1 cut(s) 894
HhaI GCGC 2 cut(s) 129, 748
Hin1II CATG 5 cut(s) 133, 232, 301, 346, 656
Hin6I GCGC 2 cut(s) 127, 746
HinP1I GCGC 2 cut(s) 127, 746
HindIII AAGCTT 2 cut(s) 328, 673
HinfI GANTC 4 cut(s) 242, 587, 731, 794
HpaII CCGG 1 cut(s) 894
HphI GGTGA 2 cut(s) 44, 362
Hpy166II GTNNAC 3 cut(s) 47, 310, 569
Hpy188III TCNNGA 4 cut(s) 457, 785, 842, 857
Hpy8I GTNNAC 3 cut(s) 47, 310, 569
HpyAV CCTTC 1 cut(s) 808
HpyCH4III ACNGT 2 cut(s) 51, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 811, 899
HpyF3I CTNAG 3 cut(s) 102, 374, 474
Hsp92II CATG 5 cut(s) 133, 232, 301, 346, 656
HspAI GCGC 2 cut(s) 127, 746
KroI GCCGGC 1 cut(s) 893
KroNI GCCGGC 1 cut(s) 895
Kzo9I GATC 5 cut(s) 67, 142, 694, 756, 868
LweI GCATC 3 cut(s) 18, 677, 823
MaeIII GTNAC 2 cut(s) 350, 506
MalI GATC 5 cut(s) 69, 144, 696, 758, 870
MboI GATC 5 cut(s) 67, 142, 694, 756, 868
MboII GAAGA 5 cut(s) 209, 554, 722, 800, 803
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 756, 868
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 95, 182, 206, 600, 647
MlyI GAGTC 2 cut(s) 236, 740
MmeI TCCRAC 1 cut(s) 722
MnlI CCTC 8 cut(s) 58, 105, 383, 487, 497, 582, 627, 658
MroNI GCCGGC 1 cut(s) 893
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 3 cut(s) 80, 219, 225
MslI CAYNNNNRTG 2 cut(s) 819, 822
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 1 cut(s) 894
MspR9I CCNGG 3 cut(s) 194, 609, 866
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 3 cut(s) 194, 609, 866
MwoI GCNNNNNNNGC 2 cut(s) 811, 899
NaeI GCCGGC 1 cut(s) 895
NdeII GATC 5 cut(s) 67, 142, 694, 756, 868
NgoMIV GCCGGC 1 cut(s) 893
NlaIII CATG 5 cut(s) 133, 232, 301, 346, 656
NlaIV GGNNCC 3 cut(s) 156, 191, 758
NsbI TGCGCA 1 cut(s) 747
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PctI GAATGC 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 895
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 587, 794
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 1 cut(s) 904
PleI GAGTC 2 cut(s) 236, 739
PpsI GAGTC 2 cut(s) 236, 739
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 3 cut(s) 192, 607, 864
PspGI CCWGG 3 cut(s) 192, 607, 864
PspN4I GGNNCC 3 cut(s) 156, 191, 758
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 4 cut(s) 154, 155, 827, 877
PstI CTGCAG 1 cut(s) 904
PsuI RGATCY 2 cut(s) 756, 868
RsaI GTAC 2 cut(s) 359, 581
RsaNI GTAC 2 cut(s) 358, 580
RseI CAYNNNNRTG 2 cut(s) 819, 822
SaqAI TTAA 3 cut(s) 80, 219, 225
SatI GCNGC 1 cut(s) 903
Sau3AI GATC 5 cut(s) 67, 142, 694, 756, 868
Sau96I GGNCC 4 cut(s) 154, 155, 827, 877
SchI GAGTC 2 cut(s) 236, 740
ScrFI CCNGG 3 cut(s) 194, 609, 866
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 18, 677, 823
SfcI CTRYAG 1 cut(s) 900
SinI GGWCC 2 cut(s) 827, 877
SmiMI CAYNNNNRTG 2 cut(s) 819, 822
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse9I AATT 5 cut(s) 95, 182, 206, 600, 647
SsiI CCGC 1 cut(s) 399
StyD4I CCNGG 3 cut(s) 192, 607, 864
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 2 cut(s) 51, 323
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 95, 182, 206, 600, 647
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 2 cut(s) 587, 794
Tru1I TTAA 3 cut(s) 80, 219, 225
Tru9I TTAA 3 cut(s) 80, 219, 225
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 902
TspDTI ATGAA 3 cut(s) 146, 270, 314
TspGWI ACGGA 2 cut(s) 749, 827
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 827, 877
XapI RAATTY 2 cut(s) 182, 206
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.