Rorug07G0303400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
30181643 .. 30182483
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0303400.1

Sequence Viewer

Length: 366 bp
ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTTGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCACCGCTGAAGGTTTCGCCAAGGTATGTCTGAGGTCTGTGGGGTTAATTGAGTGGATTGAATCTTCAATAAAATGTTGTTGCATTCGGATTGGTGGATCAGGTATGGATCTCAGAAGCAAAGCAAGGGTAAATAACATTTCTGCAGTTTATCTTGGTTACTTTTTTGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

8.78

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 109, 191
AciI CCGC 5 cut(s) 5, 64, 107, 113, 195
AclWI GGATC 2 cut(s) 295, 306
AcuI CTGAAG 1 cut(s) 219
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 27, 251, 258
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 2 cut(s) 295, 306
ApeKI GCWGC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 22, 106, 175
BanI GGYRCC 2 cut(s) 109, 191
BbvI GCAGC 1 cut(s) 112
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 159
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 101, 113
BlsI GCNGC 2 cut(s) 102, 114
BmiI GGNNCC 2 cut(s) 111, 193
BsaJI CCNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 197, 212, 316
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 112
BshNI GGYRCC 2 cut(s) 109, 191
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 273
Bsp143I GATC 3 cut(s) 68, 287, 298
BspACI CCGC 5 cut(s) 5, 64, 107, 113, 195
BspCNI CTCAG 3 cut(s) 196, 213, 315
BspLI GGNNCC 2 cut(s) 111, 193
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 2 cut(s) 295, 306
BspT107I GGYRCC 2 cut(s) 109, 191
BspTI CTTAAG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 3 cut(s) 68, 287, 298
BssT1I CCWWGG 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 183, 221, 302
BstKTI GATC 3 cut(s) 71, 290, 301
BstMBI GATC 3 cut(s) 68, 287, 298
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 188
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
DdeI CTNAG 3 cut(s) 183, 221, 302
DpnI GATC 3 cut(s) 70, 289, 300
DpnII GATC 3 cut(s) 68, 287, 298
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaiI YATR 2 cut(s) 217, 296
FaqI GGGAC 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 101, 113
Fsp4HI GCNGC 2 cut(s) 101, 113
FspBI CTAG 2 cut(s) 84, 159
GluI GCNGC 2 cut(s) 101, 113
HapII CCGG 1 cut(s) 189
HinfI GANTC 2 cut(s) 181, 251
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 22, 106, 175
Hpy188I TCNGA 5 cut(s) 76, 186, 222, 279, 305
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 273, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 183, 221, 302
Kzo9I GATC 3 cut(s) 68, 287, 298
LpnPI CCDG 4 cut(s) 89, 162, 202, 276
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 2 cut(s) 84, 159
MaeIII GTNAC 2 cut(s) 163, 347
MalI GATC 3 cut(s) 70, 289, 300
MboI GATC 3 cut(s) 68, 287, 298
MboII GAAGA 2 cut(s) 140, 246
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 298
MluCI AATT 3 cut(s) 27, 39, 237
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 4 cut(s) 115, 118, 133, 216
MseI TTAA 2 cut(s) 117, 236
MspA1I CMGCKG 2 cut(s) 103, 197
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 1 cut(s) 189
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 3 cut(s) 68, 287, 298
NlaIV GGNNCC 2 cut(s) 111, 193
NmuCI GTSAC 1 cut(s) 163
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 102, 114
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 111, 193
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 103
SaqAI TTAA 2 cut(s) 117, 236
SatI GCNGC 2 cut(s) 101, 113
Sau3AI GATC 3 cut(s) 68, 287, 298
SchI GAGTC 1 cut(s) 175
SetI ASST 6 cut(s) 105, 144, 205, 216, 227, 295
SfcI CTRYAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 3 cut(s) 27, 39, 237
SsiI CCGC 5 cut(s) 5, 64, 107, 113, 195
SspMI CTAG 2 cut(s) 84, 159
StyI CCWWGG 1 cut(s) 210
TasI AATT 3 cut(s) 27, 39, 237
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 117, 236
Tru9I TTAA 2 cut(s) 117, 236
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 116
XspI CTAG 2 cut(s) 84, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.