Rorug02G0646200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Reverse (-)
75616876 .. 75617621
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0646200.1

Sequence Viewer

Length: 399 bp
ATGGAGTCGAATCGCAAGCGCAGAGGGTTCATGAAGGGGAAGTTGACGCCATTCTATCGTGTTTCCAAACCTTCCTCAACCTCAACTACTACAACTAGCAAGCAGTCTAGCATGCAATACATGATGAGCAGCAAGGTTCAGCCGAGCCAGGCCTATCCTTTACCATCTTCGGTAGGGTTTCTGGTCCACAACCACAAGGACTATAATGTCATTGCAACTCAGGCTCAGGCTCAACCTAAACAGAAGATTACCTTCATAGTACCACCTTCTCCTGCGGATCGCAAGCAGCAGCAGCAGCAGCTCGATCATAACCTTGCTGGTGATGAGATGGTTGATATGAAGGCGGCAACCTATATTTCATCAGTTCAAGAACGTTTCAAGCTTGAACGTAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

10.04

Isoelectric Point (pI)

66.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AciI CCGC 2 cut(s) 275, 344
AclI AACGTT 1 cut(s) 373
AclWI GGATC 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 3 cut(s) 368, 379, 386
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 2 cut(s) 301, 382
AluI AGCT 2 cut(s) 301, 382
AlwI GGATC 1 cut(s) 285
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 6 cut(s) 129, 286, 289, 292, 295, 298
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 184
BbvI GCAGC 6 cut(s) 141, 298, 301, 304, 307, 310
BccI CCATC 2 cut(s) 172, 322
BciT130I CCWGG 1 cut(s) 149
BfaI CTAG 2 cut(s) 96, 108
BisI GCNGC 7 cut(s) 130, 287, 290, 293, 296, 299, 345
BlsI GCNGC 7 cut(s) 131, 288, 291, 294, 297, 300, 346
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 233, 239
BseXI GCAGC 6 cut(s) 141, 298, 301, 304, 307, 310
BshFI GGCC 1 cut(s) 152
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 277, 304
BspACI CCGC 2 cut(s) 275, 344
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 232, 238
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 210
BssMI GATC 2 cut(s) 277, 304
BssNI GRCGYC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 4 cut(s) 17, 101, 113, 284
BstDEI CTNAG 2 cut(s) 219, 225
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 280, 307
BstMBI GATC 2 cut(s) 277, 304
BstMWI GCNNNNNNNGC 4 cut(s) 221, 292, 295, 298
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 141, 298, 301, 304, 307, 310
BsuRI GGCC 1 cut(s) 152
Cac8I GCNNGC 4 cut(s) 17, 101, 113, 284
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 260
CviAII CATG 3 cut(s) 31, 112, 121
CviJI RGCY 7 cut(s) 142, 147, 152, 224, 230, 301, 382
CviKI_1 RGCY 7 cut(s) 142, 147, 152, 224, 230, 301, 382
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 219, 225
DpnI GATC 2 cut(s) 279, 306
DpnII GATC 2 cut(s) 277, 304
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 34, 115, 124
FaiI YATR 8 cut(s) 32, 113, 122, 204, 257, 309, 338, 354
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 3 cut(s) 30, 111, 120
Fnu4HI GCNGC 7 cut(s) 130, 287, 290, 293, 296, 299, 345
Fsp4HI GCNGC 7 cut(s) 130, 287, 290, 293, 296, 299, 345
FspBI CTAG 2 cut(s) 96, 108
GlaI GCGC 1 cut(s) 20
GluI GCNGC 7 cut(s) 130, 287, 290, 293, 296, 299, 345
HaeIII GGCC 1 cut(s) 152
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 34, 115, 124
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 2 cut(s) 5, 10
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 45, 187
Hpy188III TCNNGA 2 cut(s) 31, 368
Hpy8I GTNNAC 2 cut(s) 45, 187
HpyAV CCTTC 5 cut(s) 28, 81, 262, 276, 334
HpyCH4IV ACGT 2 cut(s) 373, 388
HpyCH4V TGCA 2 cut(s) 115, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 292, 295, 298
HpyF3I CTNAG 2 cut(s) 219, 225
HpySE526I ACGT 2 cut(s) 373, 388
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 34, 115, 124
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 277, 304
LpnPI CCDG 7 cut(s) 134, 161, 167, 206, 212, 285, 303
Lsp1109I GCAGC 6 cut(s) 141, 298, 301, 304, 307, 310
MaeI CTAG 2 cut(s) 96, 108
MaeII ACGT 2 cut(s) 373, 388
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 279, 306
MboI GATC 2 cut(s) 277, 304
MboII GAAGA 2 cut(s) 159, 256
MluCI AATT 1 cut(s) 394
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 17, 85, 91
MseI TTAA 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 221, 292, 295, 298
NdeII GATC 2 cut(s) 277, 304
NlaIII CATG 3 cut(s) 34, 115, 124
NmeAIII GCCGAG 1 cut(s) 168
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PagI TCATGA 1 cut(s) 30
PceI AGGCCT 1 cut(s) 152
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 7 cut(s) 131, 288, 291, 294, 297, 300, 346
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 7 cut(s) 130, 287, 290, 293, 296, 299, 345
Sau3AI GATC 2 cut(s) 277, 304
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 149
SinI GGWCC 1 cut(s) 184
SphI GCATGC 1 cut(s) 115
Sse9I AATT 1 cut(s) 394
SseBI AGGCCT 1 cut(s) 152
SsiI CCGC 2 cut(s) 275, 344
SspMI CTAG 2 cut(s) 96, 108
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 376, 391
TaqI TCGA 2 cut(s) 8, 303
TasI AATT 1 cut(s) 394
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TseI GCWGC 6 cut(s) 129, 286, 289, 292, 295, 298
TspDTI ATGAA 5 cut(s) 19, 47, 244, 348, 353
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 1 cut(s) 115
XspI CTAG 2 cut(s) 96, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.