Rroxscaffold_5G00356050

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000126
Physical Location & Seq
Reverse (-)
35220255 .. 35224796
4542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356050.1

Sequence Viewer

Length: 1962 bp
ATGATGGCGTCGGAGTTGAGACAATTGGAGGAGCAGAGGTTGCAAGAGCAACAAGAAACGTCGTCAACCCTGCTACGGTTGATTAAACGCATGAAGAACATGGAGGAGAAGTTTCGGTCGACCCGAAATTCTGCCCAGGTCCGATGTCAAGAGTTGGAGGATCGGGAAAGGCGAATCGGAGATGAGACGAGTAAACTGGACGTGTTGAAAGCCGAGACGGAGAACAAAGCTGTGGAGCTTCGAAGCCTTGAGAAGCTGATCCAGGAGAGACAAGAAGAAGCTGTAAAAGGTGAGAGTCACTTAGACTCGCTCAAGTTGTTAATCCAAGAACATGAAGAAGAACTGGAGTTTAAAGAGAAGCGGTTCTCGGATCTTGAGAGAATGATTGGTGTGAAGGAGGGAGAGTGTGAGTCGGTTCAGAAGAGAATGAAGGAGAGCTTGGAGAAACTGAATAGGGTTGAGAAGGAAATAGAAGAGAAGATTCAATTGAAACAAAAGTTAAGTAGGGCAATGGAGGTGAAAGGGAAGGTGTTTTGTTTGCATAAGACATCAATGAAGGAGTGGTCGAGAAAGCTTGAAGTAAAAGGGAGGGAACTTGAAGAATTGTCCGAGAAGATTGAGTTGAAAGAAAAACAATTTGAACCCAAAGTGGAGGAGATTCGTTTGATTGAAAAAAGGGTAAATGAATGCCTGAATGAGATTGAATTGAAAGAAAGGCATCTTCAGTCAGTCGAAAAATCAATTCAAGAGCGTGAAAATTCGTTAGAAGAACGCGAAAAGCGCTTAGATTCAATCTCTCATGGACTTGAAATGAGAGAGAAGGAACTTGATCTAAAGGCCAAAGAACTTGAACCGAAGCAATATGAACCTGCACCAGCAAGTAATGTCATTTCTTCCCTTATCGAAGTTGGGGAACCAGAATCTTTACTAGCCAAAAAAGTAGCAGTTTCATCTTCTTCAAATCCTCAATTAAGTAACTCCTTAAATGCAAGGAATTTGCATGGACAAGTGACTGGGAATGATTTGCTTGAGAACCAATTTTTTGATAATCTGCAAAGTTCATTAGACCCTGCAAAACTTGTTTTGGATTGGATGCAAACTTATCTCTCACAATATTGGACAAAAGGTGATGTTGGTTTTGAAGTAACTTCCATCAAAACCTACATTTCCCTATTAGAGCAGCTACTGAGACTCTCACCACATGCCGGAGCTCAGGTGAAAGGGGGTGCAATGAAGTTGGCAGTCCAATGGAAAGCAAATATGAGAGTTGATACAGAGAATTCCTTGGAAATTTTGGGATTTTTGCACTTCATAGCTACATTTGGGTTGCTTTATACACTAAATGTAGATGAAATTGCAAAGCTTCTTGGGATGATTTCTCAGCATAAAGAGGCTCTAGAATTATGTCAGACACTTGATTTTGCCGATGAAATCCCTGAGCAGTTTGATGATTCCTTACATTTTGTTGTTCATATGGCAGAGTTTATCGGGACTCTTGTTGAAAGGAAGCAGCTGATGGAAGCCGTTAGGATTGTGGACGACCAGATAACTCGTCTAAGAGCTGCGATTGACATGATCAAAAACCACAACTTGGAGTCGACGGAATGTGCATCAACAAACATTGAAATGCAAATAACTCGACTGCAGCAAGTAAAGGAGAACTGGAGACTTCAGGCGGCGAATTTGGCAACTGTGCCAAAAAGAGGAACCAAACGTAGTAGCAGCACTCTTCCTACTGCGTCTGAACCCCAACAGCAGCCCAATAAAGTTCATCGGACAGCTGTAGAGGTTCCTCAGCCTTCTGCATTGCAAATTTACACCCCGATCCATCCTCAGTCAGATCCTTCATCTTTGCTGTTACATATGGGGCAGTTTGGCGCCGCTCAGAACACTGATATACACTACTTTCACTCTGATAGTTGTCATCCCCAGTGGAATCACCCCAACCACTTTGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

653

Amino Acids

75.34

Weight (kDa)

5.66

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 322 - 480 1.8e-24 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 1877
AccB7I CCANNNNNTGG 1 cut(s) 1591
AccBSI CCGCTC 1 cut(s) 1883
AccI GTMKAC 2 cut(s) 119, 1598
AccII CGCG 1 cut(s) 774
AciI CCGC 3 cut(s) 361, 1676, 1881
AclWI GGATC 5 cut(s) 168, 253, 378, 1819, 1835
AcsI RAATTY 7 cut(s) 127, 757, 994, 1279, 1290, 1681, 1812
AcuI CTGAAG 2 cut(s) 707, 1655
AcyI GRCGYC 2 cut(s) 8, 1878
AfeI AGCGCT 1 cut(s) 782
AfiI CCNNNNNNNGG 4 cut(s) 75, 1205, 1591, 1703
AflIII ACRYGT 1 cut(s) 201
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 135, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
Alw21I GWGCWC 1 cut(s) 1213
Alw26I GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1660
AlwI GGATC 5 cut(s) 168, 253, 378, 1819, 1835
AlwNI CAGNNNCTG 1 cut(s) 1186
Aor51HI AGCGCT 1 cut(s) 782
AoxI GGCC 1 cut(s) 837
ApeKI GCWGC 6 cut(s) 1180, 1510, 1562, 1645, 1722, 1756
ApoI RAATTY 7 cut(s) 127, 757, 994, 1279, 1290, 1681, 1812
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 783, 1880
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 6 cut(s) 302, 529, 1139, 1188, 1228, 1931
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 1877
BanII GRGCYC 1 cut(s) 1213
Bbv12I GWGCWC 1 cut(s) 1213
BbvCI CCTCAGC 1 cut(s) 1794
BbvI GCAGC 6 cut(s) 1192, 1522, 1549, 1657, 1734, 1768
BccI CCATC 3 cut(s) 1160, 1510, 1836
BceAI ACGGC 1 cut(s) 1508
BcgI CGANNNNNNTGC 2 cut(s) 1619, 1653
BciT130I CCWGG 2 cut(s) 137, 263
BclI TGATCA 1 cut(s) 1575
BcoDI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1660
BfaI CTAG 2 cut(s) 929, 1397
BfmI CTRYAG 2 cut(s) 1643, 1782
BfoI RGCGCY 2 cut(s) 784, 1881
BfuAI ACCTGC 1 cut(s) 877
BisI GCNGC 8 cut(s) 1181, 1511, 1563, 1646, 1677, 1723, 1757, 1881
BlsI GCNGC 8 cut(s) 1182, 1512, 1564, 1647, 1678, 1724, 1758, 1882
Bme1390I CCNGG 2 cut(s) 137, 263
Bme18I GGWCC 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 4 cut(s) 915, 1708, 1791, 1879
BmrFI CCNGG 2 cut(s) 137, 263
BmrI ACTGGG 2 cut(s) 1023, 1924
BmsI GCATC 3 cut(s) 727, 1083, 1619
BmuI ACTGGG 2 cut(s) 1023, 1924
BpmI CTGGAG 2 cut(s) 365, 1684
Bpu10I CCTNAGC 3 cut(s) 1212, 1437, 1794
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 4 cut(s) 269, 296, 395, 1049
BsaHI GRCGYC 2 cut(s) 8, 1878
BsaJI CCNNGG 2 cut(s) 135, 1284
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 95, 125, 389, 419, 1200, 1230
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 1205, 1591, 1703
Bse1I ACTGG 5 cut(s) 201, 348, 1018, 1667, 1930
Bse3DI GCAATG 3 cut(s) 516, 1236, 1805
BseBI CCWGG 2 cut(s) 137, 263
BseDI CCNNGG 2 cut(s) 135, 1284
BseGI GGATG 4 cut(s) 1098, 1377, 1828, 1924
BseLI CCNNNNNNNGG 4 cut(s) 75, 1205, 1591, 1703
BseMI GCAATG 3 cut(s) 516, 1236, 1805
BseMII CTCAG 7 cut(s) 1178, 1226, 1394, 1428, 1808, 1847, 1898
BseNI ACTGG 5 cut(s) 201, 348, 1018, 1667, 1930
BseRI GAGGAG 3 cut(s) 44, 119, 668
BseXI GCAGC 6 cut(s) 1192, 1522, 1549, 1657, 1734, 1768
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 839
BshNI GGYRCC 1 cut(s) 1877
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 1213
BsiSI CCGG 1 cut(s) 1206
BslFI GGGAC 1 cut(s) 1504
BslI CCNNNNNNNGG 4 cut(s) 75, 1205, 1591, 1703
BsmAI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1660
BsmBI CGTCTC 2 cut(s) 179, 209
BsmFI GGGAC 1 cut(s) 1504
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 1 cut(s) 839
Bsp119I TTCGAA 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp143I GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
BspACI CCGC 3 cut(s) 361, 1676, 1881
BspANI GGCC 1 cut(s) 839
BspCNI CTCAG 7 cut(s) 1179, 1225, 1393, 1429, 1807, 1846, 1897
BspFNI CGCG 1 cut(s) 774
BspLI GGNNCC 4 cut(s) 915, 1708, 1791, 1879
BspMAI CTGCAG 1 cut(s) 1647
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 5 cut(s) 168, 253, 378, 1819, 1835
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 1877
BsrBI CCGCTC 1 cut(s) 1883
BsrDI GCAATG 3 cut(s) 516, 1236, 1805
BsrI ACTGG 5 cut(s) 201, 348, 1018, 1667, 1930
BssECI CCNNGG 2 cut(s) 135, 1284
BssMI GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
BssNI GRCGYC 2 cut(s) 8, 1878
BssT1I CCWWGG 1 cut(s) 1284
Bst2UI CCWGG 2 cut(s) 137, 263
Bst4CI ACNGT 2 cut(s) 78, 1693
Bst6I CTCTTC 3 cut(s) 416, 468, 1734
BstACI GRCGYC 2 cut(s) 8, 1878
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 241
BstF5I GGATG 4 cut(s) 1098, 1377, 1828, 1924
BstFNI CGCG 1 cut(s) 774
BstH2I RGCGCY 2 cut(s) 784, 1881
BstHHI GCGC 2 cut(s) 783, 1880
BstKTI GATC 7 cut(s) 163, 261, 373, 832, 1578, 1827, 1843
BstMAI GTCTC 6 cut(s) 13, 179, 209, 262, 1183, 1660
BstMBI GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 3 cut(s) 40, 780, 1685
BstNI CCWGG 2 cut(s) 137, 263
BstNSI RCATGY 1 cut(s) 1205
BstSCI CCNGG 2 cut(s) 135, 261
BstSFI CTRYAG 2 cut(s) 1643, 1782
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 6 cut(s) 1192, 1522, 1549, 1657, 1734, 1768
BstX2I RGATCY 2 cut(s) 370, 1840
BstYI RGATCY 2 cut(s) 370, 1840
BsuRI GGCC 1 cut(s) 839
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 4 cut(s) 1098, 1377, 1828, 1924
BtsIMutI CAGTG 2 cut(s) 1890, 1937
BveI ACCTGC 1 cut(s) 877
CaiI CAGNNNCTG 1 cut(s) 1186
CfoI GCGC 2 cut(s) 783, 1880
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 1728
CviAII CATG 7 cut(s) 91, 100, 332, 800, 1001, 1202, 1573
DinI GGCGCC 1 cut(s) 1879
DpnI GATC 7 cut(s) 162, 260, 372, 831, 1577, 1826, 1842
DpnII GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 3 cut(s) 416, 468, 1734
EarI CTCTTC 3 cut(s) 416, 468, 1734
Ecl136II GAGCTC 1 cut(s) 1211
Eco130I CCWWGG 1 cut(s) 1284
Eco24I GRGCYC 1 cut(s) 1213
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 782
Eco53kI GAGCTC 1 cut(s) 1211
Eco57I CTGAAG 2 cut(s) 707, 1655
EcoICRI GAGCTC 1 cut(s) 1211
EcoRI GAATTC 1 cut(s) 1279
EcoRII CCWGG 2 cut(s) 135, 261
EcoT14I CCWWGG 1 cut(s) 1284
EcoT38I GRGCYC 1 cut(s) 1213
EgeI GGCGCC 1 cut(s) 1879
EheI GGCGCC 1 cut(s) 1879
ErhI CCWWGG 1 cut(s) 1284
Esp3I CGTCTC 2 cut(s) 179, 209
FaeI CATG 7 cut(s) 94, 103, 335, 803, 1004, 1205, 1576
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 1504
FatI CATG 7 cut(s) 90, 99, 331, 799, 1000, 1201, 1572
FauNDI CATATG 2 cut(s) 1473, 1863
FbaI TGATCA 1 cut(s) 1575
FblI GTMKAC 2 cut(s) 119, 1598
Fnu4HI GCNGC 8 cut(s) 1181, 1511, 1563, 1646, 1677, 1723, 1757, 1881
FokI GGATG 4 cut(s) 1105, 1384, 1815, 1911
FriOI GRGCYC 1 cut(s) 1213
Fsp4HI GCNGC 8 cut(s) 1181, 1511, 1563, 1646, 1677, 1723, 1757, 1881
FspBI CTAG 2 cut(s) 929, 1397
GlaI GCGC 2 cut(s) 782, 1879
GluI GCNGC 8 cut(s) 1181, 1511, 1563, 1646, 1677, 1723, 1757, 1881
GsuI CTGGAG 2 cut(s) 365, 1684
HaeII RGCGCY 2 cut(s) 784, 1881
HaeIII GGCC 1 cut(s) 839
HapII CCGG 1 cut(s) 1206
HgaI GACGC 1 cut(s) 1728
HhaI GCGC 2 cut(s) 783, 1880
Hin1I GRCGYC 2 cut(s) 8, 1878
Hin1II CATG 7 cut(s) 94, 103, 335, 803, 1004, 1205, 1576
Hin6I GCGC 2 cut(s) 781, 1878
HinP1I GCGC 2 cut(s) 781, 1878
HincII GTYRAC 3 cut(s) 66, 120, 1599
HindII GTYRAC 3 cut(s) 66, 120, 1599
HindIII AAGCTT 2 cut(s) 572, 1361
HpaII CCGG 1 cut(s) 1206
HphI GGTGA 6 cut(s) 302, 529, 1139, 1188, 1228, 1931
Hpy166II GTNNAC 5 cut(s) 66, 120, 194, 1537, 1599
Hpy188III TCNNGA 7 cut(s) 149, 164, 374, 567, 746, 1397, 1489
Hpy8I GTNNAC 5 cut(s) 66, 120, 194, 1537, 1599
Hpy99I CGWCG 3 cut(s) 13, 64, 1603
HpyAV CCTTC 8 cut(s) 388, 424, 457, 520, 550, 814, 1809, 1854
HpyCH4III ACNGT 2 cut(s) 78, 1693
HpyCH4IV ACGT 3 cut(s) 59, 201, 1714
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 780, 1685
HpySE526I ACGT 3 cut(s) 59, 201, 1714
Hsp92I GRCGYC 2 cut(s) 8, 1878
Hsp92II CATG 7 cut(s) 94, 103, 335, 803, 1004, 1205, 1576
HspAI GCGC 2 cut(s) 781, 1878
KasI GGCGCC 1 cut(s) 1877
Ksp22I TGATCA 1 cut(s) 1575
Kzo9I GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
LmnI GCTCC 3 cut(s) 31, 235, 1208
Lsp1109I GCAGC 6 cut(s) 1192, 1522, 1549, 1657, 1734, 1768
LweI GCATC 3 cut(s) 727, 1083, 1619
MaeI CTAG 2 cut(s) 929, 1397
MaeII ACGT 3 cut(s) 59, 201, 1714
MaeIII GTNAC 5 cut(s) 296, 974, 1009, 1144, 1857
MalI GATC 7 cut(s) 162, 260, 372, 831, 1577, 1826, 1842
MbiI CCGCTC 1 cut(s) 1883
MboI GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
MfeI CAATTG 2 cut(s) 23, 485
MflI RGATCY 2 cut(s) 370, 1840
MhlI GDGCHC 1 cut(s) 1213
Mly113I GGCGCC 1 cut(s) 1878
MlyI GAGTC 6 cut(s) 299, 304, 419, 1185, 1486, 1604
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 6 cut(s) 84, 320, 351, 500, 971, 983
MslI CAYNNNNRTG 1 cut(s) 1625
MspA1I CMGCKG 2 cut(s) 1513, 1781
MspI CCGG 1 cut(s) 1206
MspR9I CCNGG 2 cut(s) 137, 263
MunI CAATTG 2 cut(s) 23, 485
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 137, 263
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 3 cut(s) 40, 780, 1685
NarI GGCGCC 1 cut(s) 1878
NdeI CATATG 2 cut(s) 1473, 1863
NdeII GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
NlaIII CATG 7 cut(s) 94, 103, 335, 803, 1004, 1205, 1576
NlaIV GGNNCC 4 cut(s) 915, 1708, 1791, 1879
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 296, 1009
NspI RCATGY 1 cut(s) 1205
NspV TTCGAA 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 121, 169
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 7 cut(s) 174, 481, 658, 788, 920, 1451, 1936
PflMI CCANNNNNTGG 1 cut(s) 1591
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 8 cut(s) 1182, 1512, 1564, 1647, 1678, 1724, 1758, 1882
PleI GAGTC 6 cut(s) 299, 303, 418, 1185, 1486, 1603
PluTI GGCGCC 1 cut(s) 1881
PpsI GAGTC 6 cut(s) 299, 303, 418, 1185, 1486, 1603
Psp124BI GAGCTC 1 cut(s) 1213
Psp6I CCWGG 2 cut(s) 135, 261
PspGI CCWGG 2 cut(s) 135, 261
PspN4I GGNNCC 4 cut(s) 915, 1708, 1791, 1879
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 1647
PstNI CAGNNNCTG 1 cut(s) 1186
PsuI RGATCY 2 cut(s) 370, 1840
PvuII CAGCTG 2 cut(s) 1513, 1781
RseI CAYNNNNRTG 1 cut(s) 1625
SacI GAGCTC 1 cut(s) 1213
SalI GTCGAC 2 cut(s) 118, 1597
SaqAI TTAA 6 cut(s) 84, 320, 351, 500, 971, 983
SatI GCNGC 8 cut(s) 1181, 1511, 1563, 1646, 1677, 1723, 1757, 1881
Sau3AI GATC 7 cut(s) 160, 258, 370, 829, 1575, 1824, 1840
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 6 cut(s) 299, 304, 419, 1185, 1486, 1604
ScrFI CCNGG 2 cut(s) 137, 263
SduI GDGCHC 1 cut(s) 1213
SfaNI GCATC 3 cut(s) 727, 1083, 1619
SfcI CTRYAG 2 cut(s) 1643, 1782
SfoI GGCGCC 1 cut(s) 1879
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 1625
SmlI CTYRAG 4 cut(s) 248, 311, 374, 1028
SmoI CTYRAG 4 cut(s) 248, 311, 374, 1028
SsiI CCGC 3 cut(s) 361, 1676, 1881
SspDI GGCGCC 1 cut(s) 1877
SspI AATATT 1 cut(s) 1115
SspMI CTAG 2 cut(s) 929, 1397
SstI GAGCTC 1 cut(s) 1213
StyD4I CCNGG 2 cut(s) 135, 261
StyI CCWWGG 1 cut(s) 1284
TaaI ACNGT 2 cut(s) 78, 1693
TaiI ACGT 3 cut(s) 62, 204, 1717
TaqI TCGA 7 cut(s) 119, 241, 566, 732, 903, 1598, 1639
TaqII GACCGA 1 cut(s) 105
TauI GCSGC 2 cut(s) 1679, 1883
TfiI GAWTC 7 cut(s) 174, 481, 658, 788, 920, 1451, 1936
Tru1I TTAA 6 cut(s) 84, 320, 351, 500, 971, 983
Tru9I TTAA 6 cut(s) 84, 320, 351, 500, 971, 983
TscAI CASTG 2 cut(s) 1897, 1937
TseFI GTSAC 2 cut(s) 296, 1009
TseI GCWGC 6 cut(s) 1180, 1510, 1562, 1645, 1722, 1756
Tsp45I GTSAC 2 cut(s) 296, 1009
TspGWI ACGGA 2 cut(s) 233, 1616
TspRI CASTG 2 cut(s) 1897, 1937
Van91I CCANNNNNTGG 1 cut(s) 1591
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 7 cut(s) 127, 757, 994, 1279, 1290, 1681, 1812
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 1 cut(s) 1205
XmiI GTMKAC 2 cut(s) 119, 1598
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 929, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.