pycom11g05330

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000126
Physical Location & Seq
Forward (+)
4114133 .. 4115179
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05330.2

Sequence Viewer

Length: 753 bp
ATGGAGAAGCTAGAAGCCGCAGTGAAAAAATCGGAGTTGAAGCAGAGGACTCTGCGCCAGGCGTACGACTGCGTCCACGCCCAAGCGAAGTCCCTCATGTTCTTTTCCGGACAGTGGAAGGACCTGGAGGACCACTTGGAGTCCACGCGCCGATCCGTCGAGGCTCGATTCCGAGAACTCGAGCACCGCGAGGAGGAAGTCCGAGTCCGGGACGAGGATTTGGAAGCCAGAGAGTCGAGTTTCCGCTCGGAGATGCTGGCGAAATCCAATGAGTTGCAAGTGCTTCAGAAATTGATCGAAGCGAGAAAGGACGAGCTGATCTCGCTCCAATCGGTGATTCAAGAGCTCAGCGAAGAGGTTGCTGTTCAGGAGAGGCGGTTGACGGAAGTGGAGGATTTCGTGAGGGAGAAGGAGAGGGAGTGTGAGATCATCGAGGGGCGCATTGATGAGAGGACTAGAAAATTGAATTCGATGGAGGCGAAGGAGCGGGAGGCGGCTGAGCGGTTTGAGGGATTGATGGACAAGTGCAACGCGGACATTGAGTTGAAAGAGAGGGAGTTGGGAGAGATTCTGAGGTCGATCGAGGTGCGAAAAGCGGAGTTTGATTTGAGCGGGGAGGAGCTGGAATCGGCGCGAAGATCGATTGAGGAATGTGAGAGGGAGTTGAGAGCGAAAGCGGCGGACATTGAGTTGAAAGAGAGGGAGTTGGGAGAGATTCTGAGGTTCGATCGAGGCGCGAAAGGCGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

251

Amino Acids

29.4

Weight (kDa)

4.98

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 246, 487, 502, 612
AccII CGCG 5 cut(s) 148, 189, 533, 634, 737
AccIII TCCGGA 1 cut(s) 107
AclWI GGATC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 4 cut(s) 114, 193, 208, 214
AgsI TTSAA 5 cut(s) 40, 341, 466, 547, 694
AjnI CCWGG 2 cut(s) 57, 123
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 4 cut(s) 10, 316, 346, 622
AluI AGCT 4 cut(s) 10, 316, 346, 622
Alw21I GWGCWC 2 cut(s) 186, 348
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 107
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 5 cut(s) 57, 150, 441, 634, 737
AspS9I GGNCC 2 cut(s) 121, 130
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 121, 130
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 186, 348
BccI CCATC 2 cut(s) 466, 511
BcgI CGANNNNNNTGC 4 cut(s) 341, 375, 568, 602
BciT130I CCWGG 2 cut(s) 59, 125
BcnI CCSGG 1 cut(s) 209
BfaI CTAG 2 cut(s) 11, 456
BisI GCNGC 3 cut(s) 18, 495, 678
BlpI GCTNAGC 2 cut(s) 347, 498
BlsI GCNGC 3 cut(s) 19, 496, 679
Bme1390I CCNGG 3 cut(s) 59, 125, 209
Bme18I GGWCC 2 cut(s) 121, 130
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 121, 130
BmrFI CCNGG 3 cut(s) 59, 125, 209
BmsI GCATC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 146
Bpu1102I GCTNAGC 2 cut(s) 347, 498
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 641
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 193, 208, 214
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 2 cut(s) 59, 125
BseCI ATCGAT 1 cut(s) 641
BseLI CCNNNNNNNGG 4 cut(s) 114, 193, 208, 214
BseMII CTCAG 4 cut(s) 361, 489, 563, 710
BseRI GAGGAG 2 cut(s) 206, 632
Bsh1236I CGCG 5 cut(s) 148, 189, 533, 634, 737
Bsh1285I CGRYCG 2 cut(s) 582, 730
BshVI ATCGAT 1 cut(s) 641
BsiEI CGRYCG 2 cut(s) 582, 730
BsiHKAI GWGCWC 2 cut(s) 186, 348
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 108, 208
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 2 cut(s) 76, 224
BslI CCNNNNNNNGG 4 cut(s) 114, 193, 208, 214
BsmFI GGGAC 2 cut(s) 76, 224
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 186, 348
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
Bsp1720I GCTNAGC 2 cut(s) 347, 498
BspCNI CTCAG 4 cut(s) 360, 490, 564, 711
BspDI ATCGAT 1 cut(s) 641
BspEI TCCGGA 1 cut(s) 107
BspFNI CGCG 5 cut(s) 148, 189, 533, 634, 737
BspPI GGATC 1 cut(s) 147
BsrBI CCGCTC 4 cut(s) 246, 487, 502, 612
BssMI GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
Bst2UI CCWGG 2 cut(s) 59, 125
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 347, 498, 572, 719
BstFNI CGCG 5 cut(s) 148, 189, 533, 634, 737
BstHHI GCGC 5 cut(s) 57, 150, 441, 634, 737
BstKTI GATC 7 cut(s) 155, 297, 321, 429, 582, 641, 730
BstMBI GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
BstMCI CGRYCG 2 cut(s) 582, 730
BstMWI GCNNNNNNNGC 3 cut(s) 322, 677, 741
BstNI CCWGG 2 cut(s) 59, 125
BstSCI CCNGG 3 cut(s) 57, 123, 207
BstUI CGCG 5 cut(s) 148, 189, 533, 634, 737
Bsu15I ATCGAT 1 cut(s) 641
BsuTUI ATCGAT 1 cut(s) 641
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 119
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 5 cut(s) 57, 150, 441, 634, 737
Cfr13I GGNCC 2 cut(s) 121, 130
ClaI ATCGAT 1 cut(s) 641
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 10, 17, 164, 227, 316, 346, 497, 622
CviKI_1 RGCY 8 cut(s) 10, 17, 164, 227, 316, 346, 497, 622
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 347, 498, 572, 719
DpnI GATC 7 cut(s) 154, 296, 320, 428, 581, 640, 729
DpnII GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 121, 130
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 57, 123
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FaqI GGGAC 2 cut(s) 76, 224
FatI CATG 1 cut(s) 96
FauI CCCGC 2 cut(s) 480, 605
Fnu4HI GCNGC 3 cut(s) 18, 495, 678
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 18, 495, 678
FspBI CTAG 2 cut(s) 11, 456
GlaI GCGC 5 cut(s) 56, 149, 440, 633, 736
GluI GCNGC 3 cut(s) 18, 495, 678
GsuI CTGGAG 1 cut(s) 146
HapII CCGG 2 cut(s) 108, 208
HgaI GACGC 1 cut(s) 61
HhaI GCGC 5 cut(s) 57, 150, 441, 634, 737
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 5 cut(s) 55, 148, 439, 632, 735
HinP1I GCGC 5 cut(s) 55, 148, 439, 632, 735
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 9 cut(s) 49, 140, 168, 204, 233, 337, 568, 626, 715
HpaII CCGG 2 cut(s) 108, 208
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 3 cut(s) 76, 144, 381
Hpy188I TCNGA 7 cut(s) 34, 173, 203, 250, 288, 573, 720
Hpy188III TCNNGA 4 cut(s) 108, 341, 368, 400
Hpy8I GTNNAC 3 cut(s) 76, 144, 381
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 112, 403, 475
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 277, 528
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 677, 741
HpyF3I CTNAG 4 cut(s) 347, 498, 572, 719
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 5 cut(s) 55, 148, 439, 632, 735
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
LmnI GCTCC 3 cut(s) 330, 484, 619
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 11, 456
MalI GATC 7 cut(s) 154, 296, 320, 428, 581, 640, 729
MbiI CCGCTC 4 cut(s) 246, 487, 502, 612
MboI GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
MboII GAAGA 2 cut(s) 365, 648
MhlI GDGCHC 2 cut(s) 186, 348
MluCI AATT 3 cut(s) 290, 461, 466
MlyI GAGTC 4 cut(s) 43, 149, 213, 242
MroI TCCGGA 1 cut(s) 107
MspI CCGG 2 cut(s) 108, 208
MspR9I CCNGG 3 cut(s) 59, 125, 209
MvaI CCWGG 2 cut(s) 59, 125
MvnI CGCG 5 cut(s) 148, 189, 533, 634, 737
MwoI GCNNNNNNNGC 3 cut(s) 322, 677, 741
NciI CCSGG 1 cut(s) 209
NdeII GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
NlaIII CATG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 476
PfeI GAWTC 5 cut(s) 168, 337, 568, 626, 715
Pfl23II CGTACG 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 3 cut(s) 19, 496, 679
Ple19I CGATCG 2 cut(s) 582, 730
PleI GAGTC 4 cut(s) 43, 148, 212, 241
PpsI GAGTC 4 cut(s) 43, 148, 212, 241
PpuMI RGGWCCY 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 57, 123
PspGI CCWGG 2 cut(s) 57, 123
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 2 cut(s) 121, 130
PspPPI RGGWCCY 1 cut(s) 121
PspXI VCTCGAGB 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 71
PvuI CGATCG 2 cut(s) 582, 730
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 348
SatI GCNGC 3 cut(s) 18, 495, 678
Sau3AI GATC 7 cut(s) 152, 294, 318, 426, 579, 638, 727
Sau96I GGNCC 2 cut(s) 121, 130
SchI GAGTC 4 cut(s) 43, 149, 213, 242
ScrFI CCNGG 3 cut(s) 59, 125, 209
SduI GDGCHC 2 cut(s) 186, 348
SetI ASST 9 cut(s) 12, 126, 318, 348, 360, 578, 588, 624, 725
SfaNI GCATC 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 2 cut(s) 121, 130
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 290, 461, 466
SspMI CTAG 2 cut(s) 11, 456
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 57, 123, 207
TaaI ACNGT 1 cut(s) 114
TasI AATT 3 cut(s) 290, 461, 466
TauI GCSGC 3 cut(s) 20, 497, 680
TfiI GAWTC 5 cut(s) 168, 337, 568, 626, 715
TscAI CASTG 2 cut(s) 27, 119
TspGWI ACGGA 2 cut(s) 145, 398
TspRI CASTG 2 cut(s) 27, 119
Tth111I GACNNNGTC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 121, 130
XapI RAATTY 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 2 cut(s) 11, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.