Rorug02G0644800

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Forward (+)
75532781 .. 75533257
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0644800.1

Sequence Viewer

Length: 477 bp
ATGAGTAAGGCTCAAGCCGAGGTTCGACGAGTCTTTCAAGGAAAGCCGAAAATTGAAGAAGCAGACGTTCAAAAACCGGAATACTTGAGAGCAGTGGTAAAAGAAACACTGAGGTTACACCCTCCAGCACCATTATTCCCAAGAGAATCAAGAGAAATATGTGAAATCGGAGGATACGAAGTCCAAGCGAAAACCAAAATGATCATCAATGAATGGGCCATTGGAAGAGACCCGGAGAGTTGGGTTGAAGCGGAGTCGTTTAAGCCAGAGAGGTTTCTCCATGGTGGTTCTGATTCCAGCATGGACTTTAAAGCGTCTGACTTCAAGTTCACTCCAGTTGGGGCTGGTAGAAGATCGTGTCCGGGTATTTCTTTTGGCCTTTCCATGGTTGAACTTGCTTTTTCTCAGTTGCTCTATCACTTCGATTGGGAGCTGGGAAATGGGATCAAACCAGATGAGCTTGATATATATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

158

Amino Acids

17.95

Weight (kDa)

5.33

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 147 8.4e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 6 cut(s) 38, 56, 71, 248, 325, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 433, 460
AluI AGCT 2 cut(s) 433, 460
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 452
AoxI GGCC 2 cut(s) 216, 376
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 2 cut(s) 233, 363
BciVI GTATCC 1 cut(s) 167
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 2 cut(s) 233, 363
BcoDI GTCTC 1 cut(s) 222
BfuI GTATCC 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 233, 363
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 233, 363
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 108, 318
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 2 cut(s) 233, 363
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 18, 280, 384
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 18, 280, 384
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 101, 419
BseNI ACTGG 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 433
BshFI GGCC 2 cut(s) 218, 378
BsiSI CCGG 3 cut(s) 77, 233, 362
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 222
BsnI GGCC 2 cut(s) 218, 378
Bso31I GGTCTC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 201, 353, 444
Bsp19I CCATGG 2 cut(s) 280, 384
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 218, 378
BspCNI CTCAG 2 cut(s) 102, 418
BspPI GGATC 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 18, 280, 384
BssMI GATC 3 cut(s) 201, 353, 444
BssT1I CCWWGG 2 cut(s) 280, 384
Bst6I CTCTTC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 110, 405
BstDSI CCRYGG 2 cut(s) 280, 384
BstKTI GATC 3 cut(s) 204, 356, 447
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 201, 353, 444
BstSCI CCNGG 2 cut(s) 231, 361
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 2 cut(s) 218, 378
BtgI CCRYGG 2 cut(s) 280, 384
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 107
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 303
CviAII CATG 3 cut(s) 281, 301, 385
CviJI RGCY 9 cut(s) 11, 17, 46, 218, 265, 344, 378, 433, 460
CviKI_1 RGCY 9 cut(s) 11, 17, 46, 218, 265, 344, 378, 433, 460
DdeI CTNAG 2 cut(s) 110, 405
DpnI GATC 3 cut(s) 203, 355, 446
DpnII GATC 3 cut(s) 201, 353, 444
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 280, 384
Eco31I GGTCTC 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 280, 384
ErhI CCWWGG 2 cut(s) 280, 384
FaeI CATG 3 cut(s) 284, 304, 388
FaiI YATR 7 cut(s) 160, 282, 302, 386, 467, 469, 471
FatI CATG 3 cut(s) 280, 300, 384
FbaI TGATCA 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 437
GsuI CTGGAG 2 cut(s) 108, 318
HaeIII GGCC 2 cut(s) 218, 378
HapII CCGG 3 cut(s) 77, 233, 362
HgaI GACGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 284, 304, 388
HinfI GANTC 4 cut(s) 30, 146, 254, 293
HpaII CCGG 3 cut(s) 77, 233, 362
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 170, 292, 319
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 110, 405
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 3 cut(s) 284, 304, 388
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 3 cut(s) 201, 353, 444
LmnI GCTCC 1 cut(s) 430
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 114
MalI GATC 3 cut(s) 203, 355, 446
MboI GATC 3 cut(s) 201, 353, 444
MboII GAAGA 3 cut(s) 68, 237, 363
MluCI AATT 1 cut(s) 51
MlyI GAGTC 2 cut(s) 39, 263
MnlI CCTC 5 cut(s) 13, 105, 132, 164, 264
MseI TTAA 2 cut(s) 261, 309
MspI CCGG 3 cut(s) 77, 233, 362
MspR9I CCNGG 2 cut(s) 233, 363
NciI CCSGG 2 cut(s) 233, 363
NcoI CCATGG 2 cut(s) 280, 384
NdeII GATC 3 cut(s) 201, 353, 444
NlaIII CATG 3 cut(s) 284, 304, 388
NmeAIII GCCGAG 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 2 cut(s) 146, 293
PleI GAGTC 2 cut(s) 38, 262
PpsI GAGTC 2 cut(s) 38, 262
PspFI CCCAGC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 261, 309
Sau3AI GATC 3 cut(s) 201, 353, 444
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 2 cut(s) 39, 263
ScrFI CCNGG 2 cut(s) 233, 363
SetI ASST 6 cut(s) 24, 69, 116, 275, 435, 462
SmlI CTYRAG 2 cut(s) 12, 85
SmoI CTYRAG 2 cut(s) 12, 85
Sse9I AATT 1 cut(s) 51
SsiI CCGC 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 231, 361
StyI CCWWGG 2 cut(s) 280, 384
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 25, 423
TasI AATT 1 cut(s) 51
TfiI GAWTC 2 cut(s) 146, 293
Tru1I TTAA 2 cut(s) 261, 309
Tru9I TTAA 2 cut(s) 261, 309
TscAI CASTG 2 cut(s) 99, 114
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 99, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.