Rorug02G0643900

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Forward (+)
75499534 .. 75502271
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0643900.1

Sequence Viewer

Length: 615 bp
ATGGATTTGCAGCACAACGACTTCGATCGGATCCTCTTCTTCGAGCACGCTCGTAAGACCGCCGAAGCTACTCACGCTAAGAACCCTTCCGATGCGGATAACTTGACAAGGTGGGCTGGAGCTCTATTGGAGTTATCTCAATTTCAGAATGTGCAAGAGTCCAAAATTATGATCCAAGATGCAATTTCGAAGCTGGAGGAGGTGTTGGTGCTTAAACCTAAGAAACATGATGCTCTTTGGTGCCTGGGAAATGCACATACTTCTCATGCGTTTTTGACACCGGATGCGGAAGAGGCAAAGGAATATTTTGACACCGCGGCTGAGTACTTCAAGAAAGCTGTTGCTGAGGAACCAGGAAATGATCTCTATCGGAAATCTTTGGAAGTGTCTGCTAAGGCCCCGGAATTGCATGTGGAAATCCATAGGCATGGTATTGGTCAGCAGATGACGGGGGCTGCTGCTGGGCCTTCTACTTCCTCTGGTACAATGGCTGCAAAGAAAAAGAAGAGCAGCGATCTCAAGTATGACATATTTGGTTGGATAATCCTTGCTGTCGGAATTGTCGCTTGGGTAGGATTTGGGAAATCTAATGTACCTCCCCCGCCTCAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

204

Amino Acids

22.55

Weight (kDa)

6.13

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOM20_plant PF06552 8 - 195 1.3e-93 Plant specific mitochondrial import receptor subunit TOM20
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 240
AccII CGCG 1 cut(s) 317
AciI CCGC 6 cut(s) 60, 95, 287, 315, 317, 602
AclWI GGATC 3 cut(s) 25, 38, 166
AfaI GTAC 3 cut(s) 326, 484, 594
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 2 cut(s) 243, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AluBI AGCT 4 cut(s) 68, 122, 193, 338
AluI AGCT 4 cut(s) 68, 122, 193, 338
Alw21I GWGCWC 2 cut(s) 48, 124
AlwI GGATC 3 cut(s) 25, 38, 166
AoxI GGCC 2 cut(s) 396, 464
ApeKI GCWGC 5 cut(s) 10, 455, 458, 491, 510
AspS9I GGNCC 2 cut(s) 397, 464
AsuC2I CCSGG 1 cut(s) 401
AsuII TTCGAA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 48, 124
BbvCI CCTCAGC 2 cut(s) 345, 606
BbvI GCAGC 5 cut(s) 22, 442, 445, 478, 522
BciT130I CCWGG 2 cut(s) 245, 354
BcnI CCSGG 1 cut(s) 401
BisI GCNGC 6 cut(s) 11, 318, 456, 459, 492, 511
BlsI GCNGC 6 cut(s) 12, 319, 457, 460, 493, 512
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 245, 354, 401
BmgT120I GGNCC 2 cut(s) 397, 464
BmiI GGNNCC 4 cut(s) 32, 242, 351, 399
BmrFI CCNGG 3 cut(s) 245, 354, 401
BmsI GCATC 4 cut(s) 82, 169, 220, 274
BpmI CTGGAG 2 cut(s) 138, 215
Bpu10I CCTNAGC 3 cut(s) 345, 393, 606
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 244, 315, 399
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 2 cut(s) 245, 354
BseDI CCNNGG 3 cut(s) 244, 315, 399
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 366
BseMII CTCAG 2 cut(s) 312, 336
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 5 cut(s) 22, 442, 445, 478, 522
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 398, 466
BshNI GGYRCC 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 48, 124
BsiSI CCGG 2 cut(s) 281, 401
BsnI GGCC 2 cut(s) 398, 466
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 48, 124
Bsp143I GATC 5 cut(s) 25, 30, 171, 361, 514
BspACI CCGC 6 cut(s) 60, 95, 287, 315, 317, 602
BspANI GGCC 2 cut(s) 398, 466
BspCNI CTCAG 2 cut(s) 313, 337
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 4 cut(s) 32, 242, 351, 399
BspPI GGATC 3 cut(s) 25, 38, 166
BspQI GCTCTTC 1 cut(s) 500
BspT104I TTCGAA 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 244, 315, 399
BssMI GATC 5 cut(s) 25, 30, 171, 361, 514
Bst2UI CCWGG 2 cut(s) 245, 354
Bst6I CTCTTC 3 cut(s) 41, 285, 500
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 6 cut(s) 78, 219, 321, 345, 393, 606
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 5 cut(s) 28, 33, 174, 364, 517
BstMBI GATC 5 cut(s) 25, 30, 171, 361, 514
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 74, 293
BstNI CCWGG 2 cut(s) 245, 354
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 243, 352, 399
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 5 cut(s) 22, 442, 445, 478, 522
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 2 cut(s) 398, 466
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 397, 464
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 3 cut(s) 325, 483, 593
CviAII CATG 4 cut(s) 227, 266, 410, 428
CviQI GTAC 3 cut(s) 325, 483, 593
DdeI CTNAG 6 cut(s) 78, 219, 321, 345, 393, 606
DpnI GATC 5 cut(s) 27, 32, 173, 363, 516
DpnII GATC 5 cut(s) 25, 30, 171, 361, 514
Eam1104I CTCTTC 3 cut(s) 41, 285, 500
EarI CTCTTC 3 cut(s) 41, 285, 500
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 243, 352
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 4 cut(s) 230, 269, 413, 431
FaiI YATR 9 cut(s) 170, 228, 258, 267, 411, 423, 429, 525, 530
FatI CATG 4 cut(s) 226, 265, 409, 427
FauI CCCGC 1 cut(s) 609
Fnu4HI GCNGC 6 cut(s) 11, 318, 456, 459, 492, 511
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 6 cut(s) 11, 318, 456, 459, 492, 511
GluI GCNGC 6 cut(s) 11, 318, 456, 459, 492, 511
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 2 cut(s) 138, 215
HaeIII GGCC 2 cut(s) 398, 466
HapII CCGG 2 cut(s) 281, 401
Hin1II CATG 4 cut(s) 230, 269, 413, 431
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 281, 401
Hpy188I TCNGA 5 cut(s) 30, 91, 147, 372, 557
Hpy188III TCNNGA 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 96, 477
HpyCH4V TGCA 6 cut(s) 10, 154, 182, 254, 409, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 293
HpyF3I CTNAG 6 cut(s) 78, 219, 321, 345, 393, 606
Hsp92II CATG 4 cut(s) 230, 269, 413, 431
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 5 cut(s) 25, 30, 171, 361, 514
LguI GCTCTTC 1 cut(s) 500
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 5 cut(s) 22, 442, 445, 478, 522
LweI GCATC 4 cut(s) 82, 169, 220, 274
MalI GATC 5 cut(s) 27, 32, 173, 363, 516
MboI GATC 5 cut(s) 25, 30, 171, 361, 514
MboII GAAGA 4 cut(s) 28, 31, 302, 517
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 48, 124
MluCI AATT 5 cut(s) 140, 165, 183, 404, 558
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 518, 535
MnlI CCTC 8 cut(s) 44, 190, 193, 286, 340, 487, 606, 615
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 281, 401
MspR9I CCNGG 3 cut(s) 245, 354, 401
MvaI CCWGG 2 cut(s) 245, 354
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 74, 293
NciI CCSGG 1 cut(s) 401
NdeII GATC 5 cut(s) 25, 30, 171, 361, 514
NlaIII CATG 4 cut(s) 230, 269, 413, 431
NlaIV GGNNCC 4 cut(s) 32, 242, 351, 399
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 500
PkrI GCNGC 6 cut(s) 12, 319, 457, 460, 493, 512
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 243, 352
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 243, 352
PspN4I GGNNCC 4 cut(s) 32, 242, 351, 399
PspPI GGNCC 2 cut(s) 397, 464
PsuI RGATCY 1 cut(s) 30
PvuI CGATCG 1 cut(s) 28
RsaI GTAC 3 cut(s) 326, 484, 594
RsaNI GTAC 3 cut(s) 325, 483, 593
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 6 cut(s) 11, 318, 456, 459, 492, 511
Sau3AI GATC 5 cut(s) 25, 30, 171, 361, 514
Sau96I GGNCC 2 cut(s) 397, 464
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 3 cut(s) 245, 354, 401
SduI GDGCHC 2 cut(s) 48, 124
SetI ASST 8 cut(s) 70, 113, 124, 195, 204, 220, 340, 598
SfaNI GCATC 4 cut(s) 82, 169, 220, 274
Sfr303I CCGCGG 1 cut(s) 318
SfuI TTCGAA 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 140, 165, 183, 404, 558
SsiI CCGC 6 cut(s) 60, 95, 287, 315, 317, 602
SspI AATATT 1 cut(s) 305
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 243, 352, 399
TaqI TCGA 3 cut(s) 24, 42, 188
TasI AATT 5 cut(s) 140, 165, 183, 404, 558
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 5 cut(s) 10, 455, 458, 491, 510
XceI RCATGY 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.