Rmu_sc0005888.1_g000014

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0000126
Physical Location & Seq
Reverse (-)
62903 .. 64377
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005888.1_g000014.1.cds

Sequence Viewer

Length: 1008 bp
atgaggttgagtgtaaggactaaggagaaggaactgaacaagtaccgtgaggatgctaagttgaaagtggagcaactaagtgtgattgatggggcaattgtggagcgtaacgaaatcatcgagtcaaaagatgagaaattgagttggattgagaagagtattgaagagaaatccaagttggccaactctaaggaggaggaagtgagagcgatacaacggtcgttgaatgtataccgtgagagtattaagtcaaaagagagtgacttagatgcgattcttgagtcgattgaaaggaagaagaaagaatttgatgtgaaagaagagcaaattaaaacgttgcagagattgattgagggatgtgagaaagagctcaaattgaaagaagagatattgaaggaggaaacactgaaagtgaaacaatacagtttgcgaaatagacaaatggaggagtggtcctgcaggcttgaacttaaagagagggaagttgaattgaaagagaaacgattagagtcaaaaatggaggaatttaaaaaatgggttgaagaacgaggaaaggatttgaattcactctcctcggaactgaaagttaaagagtgtcaacttgaacaggcggccaaagagcttgagttgactaagaaacaatgtggtgttgttgctcaagtgaagattgggccattggaaaagactccagagaacgatgccattgtttcttcatctgcaagtgatcaatccaacatcaatattaccgacgtgaccatggagaagatagcatccgatttgaaagtatcggagctgaagcagaggagtctaggcaaggcgtacgagaccttgcattcccaagcgtcttccatactcgttctcagcattcaatggaaggacttccaggaacacttcgattcgactcggaatgcgatccggactcgtttcgaagagcttcaggaacgagagaagcagttggaagccaaggagtcaaacttgaagtcggagatggaatccaagaaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

335

Amino Acids

39.24

Weight (kDa)

5.67

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 915
AciI CCGC 1 cut(s) 611
AclI AACGTT 1 cut(s) 335
AclWI GGATC 1 cut(s) 907
AcoI YGGCCR 2 cut(s) 180, 612
AcsI RAATTY 3 cut(s) 305, 524, 562
AcuI CTGAAG 2 cut(s) 815, 920
AfaI GTAC 2 cut(s) 44, 821
AjiI CACGTC 1 cut(s) 751
AjnI CCWGG 1 cut(s) 882
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 370, 622, 793, 934
AluI AGCT 4 cut(s) 370, 622, 793, 934
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 818
AlwI GGATC 1 cut(s) 907
Aor13HI TCCGGA 1 cut(s) 915
AoxI GGCC 3 cut(s) 180, 612, 671
ApoI RAATTY 3 cut(s) 305, 524, 562
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
Asp700I GAANNNNTTC 2 cut(s) 878, 933
AspS9I GGNCC 2 cut(s) 453, 671
AsuII TTCGAA 1 cut(s) 927
AvaII GGWCC 1 cut(s) 453
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 1 cut(s) 372
BccI CCATC 2 cut(s) 83, 982
BciT130I CCWGG 1 cut(s) 884
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 818
BfaI CTAG 2 cut(s) 809, 1006
BfmI CTRYAG 1 cut(s) 457
BisI GCNGC 1 cut(s) 612
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 884
Bme18I GGWCC 1 cut(s) 453
BmgBI CACGTC 1 cut(s) 751
BmgT120I GGNCC 2 cut(s) 453, 671
BmrFI CCNGG 1 cut(s) 884
BmsI GCATC 4 cut(s) 43, 259, 688, 779
BpiI GAAGAC 1 cut(s) 837
BpmI CTGGAG 1 cut(s) 672
Bpu14I TTCGAA 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 299, 642, 644
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 3 cut(s) 573, 756, 963
BsaWI WCCGGW 1 cut(s) 915
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
BseAI TCCGGA 1 cut(s) 915
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 3 cut(s) 573, 756, 963
BseGI GGATG 3 cut(s) 58, 362, 770
BseMII CTCAG 1 cut(s) 874
BseRI GAGGAG 4 cut(s) 209, 461, 562, 817
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 182, 614, 673
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 916
BsiWI CGTACG 1 cut(s) 819
BsmAI GTCTC 1 cut(s) 818
BsmI GAATGC 3 cut(s) 832, 864, 913
BsnI GGCC 3 cut(s) 182, 614, 673
Bso31I GGTCTC 1 cut(s) 818
Bsp119I TTCGAA 1 cut(s) 927
Bsp1286I GDGCHC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 915
Bsp143I GATC 2 cut(s) 724, 912
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 1 cut(s) 611
BspANI GGCC 3 cut(s) 182, 614, 673
BspCNI CTCAG 1 cut(s) 873
BspEI TCCGGA 1 cut(s) 915
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 907
BspQI GCTCTTC 2 cut(s) 315, 924
BspT104I TTCGAA 1 cut(s) 927
BspTNI GGTCTC 1 cut(s) 818
BssECI CCNNGG 3 cut(s) 573, 756, 963
BssMI GATC 2 cut(s) 724, 912
BssNAI GTATAC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 756, 963
Bst1107I GTATAC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 4 cut(s) 47, 219, 236, 425
Bst6I CTCTTC 5 cut(s) 149, 159, 315, 378, 924
BstBI TTCGAA 1 cut(s) 927
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 7 cut(s) 21, 57, 77, 189, 265, 633, 860
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 3 cut(s) 58, 362, 770
BstKTI GATC 2 cut(s) 727, 915
BstMAI GTCTC 1 cut(s) 818
BstMBI GATC 2 cut(s) 724, 912
BstMCI CGRYCG 1 cut(s) 221
BstNI CCWGG 1 cut(s) 884
BstSCI CCNGG 1 cut(s) 882
BstSFI CTRYAG 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 837
BstZ17I GTATAC 1 cut(s) 232
BsuRI GGCC 3 cut(s) 182, 614, 673
BtgI CCRYGG 1 cut(s) 756
BtrI CACGTC 1 cut(s) 751
BtsCI GGATG 3 cut(s) 58, 362, 770
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 453, 671
CseI GACGC 1 cut(s) 831
Csp6I GTAC 2 cut(s) 43, 820
CviAII CATG 1 cut(s) 757
CviJI RGCY 9 cut(s) 182, 370, 463, 614, 622, 673, 793, 934, 962
CviKI_1 RGCY 9 cut(s) 182, 370, 463, 614, 622, 673, 793, 934, 962
CviQI GTAC 2 cut(s) 43, 820
DdeI CTNAG 7 cut(s) 21, 57, 77, 189, 265, 633, 860
DpnI GATC 2 cut(s) 726, 914
DpnII GATC 2 cut(s) 724, 912
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 2 cut(s) 180, 612
Eam1104I CTCTTC 5 cut(s) 149, 159, 315, 378, 924
EarI CTCTTC 5 cut(s) 149, 159, 315, 378, 924
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 756, 963
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 815, 920
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 882
EcoT14I CCWWGG 2 cut(s) 756, 963
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 756, 963
FaeI CATG 1 cut(s) 760
FaiI YATR 3 cut(s) 232, 758, 851
FatI CATG 1 cut(s) 756
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 3 cut(s) 65, 369, 757
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 2 cut(s) 809, 1006
GluI GCNGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 3 cut(s) 182, 614, 673
HapII CCGG 1 cut(s) 916
HgaI GACGC 1 cut(s) 831
Hin1II CATG 1 cut(s) 760
HincII GTYRAC 2 cut(s) 599, 630
HindII GTYRAC 2 cut(s) 599, 630
HpaII CCGG 1 cut(s) 916
Hpy166II GTNNAC 3 cut(s) 232, 599, 630
Hpy188I TCNGA 5 cut(s) 577, 775, 790, 906, 985
Hpy188III TCNNGA 4 cut(s) 278, 689, 916, 938
Hpy8I GTNNAC 3 cut(s) 232, 599, 630
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 4 cut(s) 22, 388, 868, 994
HpyCH4III ACNGT 4 cut(s) 47, 219, 236, 425
HpyCH4IV ACGT 2 cut(s) 335, 750
HpyCH4V TGCA 4 cut(s) 340, 459, 719, 832
HpyF3I CTNAG 7 cut(s) 21, 57, 77, 189, 265, 633, 860
HpySE526I ACGT 2 cut(s) 335, 750
Hsp92II CATG 1 cut(s) 760
Kpn2I TCCGGA 1 cut(s) 915
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 2 cut(s) 724, 912
LguI GCTCTTC 2 cut(s) 315, 924
LmnI GCTCC 3 cut(s) 70, 103, 790
LpnPI CCDG 8 cut(s) 445, 469, 593, 702, 869, 896, 923, 929
LweI GCATC 4 cut(s) 43, 259, 688, 779
MaeI CTAG 2 cut(s) 809, 1006
MaeII ACGT 2 cut(s) 335, 750
MaeIII GTNAC 3 cut(s) 107, 260, 751
MalI GATC 2 cut(s) 726, 914
MboI GATC 2 cut(s) 724, 912
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 8 cut(s) 96, 137, 305, 327, 374, 488, 524, 562
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 8 cut(s) 131, 290, 518, 679, 814, 895, 913, 977
MmeI TCCRAC 4 cut(s) 125, 756, 936, 963
Mox20I TGGCCA 1 cut(s) 182
MroI TCCGGA 1 cut(s) 915
MroXI GAANNNNTTC 2 cut(s) 878, 933
MscI TGGCCA 1 cut(s) 182
MseI TTAA 5 cut(s) 246, 330, 471, 528, 588
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 916
MspR9I CCNGG 1 cut(s) 884
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 3 cut(s) 832, 864, 913
MvaI CCWGG 1 cut(s) 884
NcoI CCATGG 1 cut(s) 756
NdeII GATC 2 cut(s) 724, 912
NlaIII CATG 1 cut(s) 760
NmuCI GTSAC 2 cut(s) 260, 751
NspV TTCGAA 1 cut(s) 927
PciSI GCTCTTC 2 cut(s) 315, 924
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 3 cut(s) 832, 864, 913
PdmI GAANNNNTTC 2 cut(s) 878, 933
PfeI GAWTC 3 cut(s) 274, 896, 992
Pfl23II CGTACG 1 cut(s) 819
PfoI TCCNGGA 1 cut(s) 882
PkrI GCNGC 1 cut(s) 613
PleI GAGTC 8 cut(s) 130, 289, 517, 679, 813, 895, 913, 976
PpsI GAGTC 8 cut(s) 130, 289, 517, 679, 813, 895, 913, 976
Psp124BI GAGCTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 882
PspGI CCWGG 1 cut(s) 882
PspLI CGTACG 1 cut(s) 819
PspPI GGNCC 2 cut(s) 453, 671
PstI CTGCAG 1 cut(s) 461
RsaI GTAC 2 cut(s) 44, 821
RsaNI GTAC 2 cut(s) 43, 820
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 2 cut(s) 315, 924
SaqAI TTAA 5 cut(s) 246, 330, 471, 528, 588
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 2 cut(s) 724, 912
Sau96I GGNCC 2 cut(s) 453, 671
SbfI CCTGCAGG 1 cut(s) 461
SchI GAGTC 8 cut(s) 131, 290, 518, 679, 814, 895, 913, 977
ScrFI CCNGG 1 cut(s) 884
SdaI CCTGCAGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 372
SetI ASST 8 cut(s) 8, 338, 372, 624, 753, 795, 830, 936
SfaNI GCATC 4 cut(s) 43, 259, 688, 779
SfcI CTRYAG 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 927
SinI GGWCC 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 278, 623, 657
SmoI CTYRAG 3 cut(s) 278, 623, 657
Sse8387I CCTGCAGG 1 cut(s) 461
Sse9I AATT 8 cut(s) 96, 137, 305, 327, 374, 488, 524, 562
SsiI CCGC 1 cut(s) 611
SspI AATATT 1 cut(s) 742
SspMI CTAG 2 cut(s) 809, 1006
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 882
StyI CCWWGG 2 cut(s) 756, 963
TaaI ACNGT 4 cut(s) 47, 219, 236, 425
TaiI ACGT 2 cut(s) 338, 753
TaqI TCGA 5 cut(s) 120, 284, 894, 899, 927
TasI AATT 8 cut(s) 96, 137, 305, 327, 374, 488, 524, 562
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 3 cut(s) 274, 896, 992
Tru1I TTAA 5 cut(s) 246, 330, 471, 528, 588
Tru9I TTAA 5 cut(s) 246, 330, 471, 528, 588
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 260, 751
Tsp45I GTSAC 2 cut(s) 260, 751
TspDTI ATGAA 1 cut(s) 702
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 3 cut(s) 305, 524, 562
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 2 cut(s) 878, 933
XspI CTAG 2 cut(s) 809, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.