Rh4AG168200

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000126
Physical Location & Seq
Reverse (-)
42340427 .. 42344013
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG168200.1

Sequence Viewer

Length: 2055 bp
ATGATGGCGTCGGAGTTGAGACAATTGGAGGAGCAGAGGTTGCAAGAGCAACAAGAAACGTCGTCAACCCTGCTTCGGTTGATTAAACGCATGAAGAACATGGAGGACAAGTTTCGGTCGACCCGAAATTCTGCCCAGGTCCGATGTCAAGAGTTGGAGGATCGGGAGAGGCGAATAGGAGATGAGACGAGCAAACTGGACGTGTTGAAGGCCGAGACGGAGAACAAAGCTGTGGAGCTTCGAAGCCTTGAGAAGCTGATCCAGGAGAGACAAGAAGAAGCTGTAAAAGGTGAGAGTCACTTAGACTCGCTCAAGTTGTTAATCCAAGAACATGAAGAAGAACTGGAGTTTAAAGAGAAGCGGTTCTTGGATCTTGAGAGAATGATTGGTGTGAAGGAGGGAGAGTGTGAGTCGGTGCAGAAGAGAATGATGGAGAGCTTGGAGAAACTGAATAGGGTTGAGAAGGAAATAGAAGAGAAGATTCAATTGAAACAAAAGTTAAGTAGGGCAATGGAGGTGAAAGGGAAGGTGTTTTGTTTGCATAAGACATCAATGAAGGAGTGGTCGAGAAAGCTTGAAGTAAAAGGGAGGGAACTTGAAGAATTGTCTGAGAAGATTGAGTTGAAAGAAAAACAATTTGAACCGAAAGTGGAGGAGATTCGTTTGATTGAAAAAAGGGTAAATGAATGCCTGAATGAAATTGAATTGAAAGAAAGGCATCTTCAGTCACTCGAAAAATCAATTCAAGAGCGTGAAAATTCGTTAGAAGAACGCGAAAAGCACTTAGATTCAATCTCTCATGGACTTGAAATGAGAGAGAAGGAACCTGATCTAAAGGCCAAAGAACTTGAACCGAAGCAATATGAACCGGCACCAGCAAGTAATGTCATTTCTTCCCTTATCGAAGTTGGGGAACCAGAATCTTTACTAGCCAAAAAAGTAGCAGTTTCATCTTCTTCAAATCCTCAATTAAGTGACTCCTTAAAGGCAAGGAATTTGCATGGACAAGTGACTGGGAATGATTTGCTTGAGAACCAATTTTTTGATAATCTGCAAAGTTCAGTAGACCCTGCAAAACTTGTGTTGGATTGGATGCAAACTTGTCTCTCACAATATTGGACAAAAGGTGATGTTGGGCATGGTTTTGAGGTAACTTCCATCAAAACCTACATTTCCCTATTAGAGCAGCTACTGAGACTCTCACCACATGCCGGAGTTCAGGTGAAAGGGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAATATGAGAGCTGATACAGAGAATTCCTTGGAAATTTTGGGATTTTTGCACTTCCTAGCTACATTTGGGTTGCTTTATACTCTAAATGTAGATGAAATTGTAAAGCTTCTTGGGATGATTTCTCAGCATAAAGAGGCTCTAGAATTATGTCAGACACTTGATTTTGCAGATGAAATCCCCGAGTTTATCGGGACTCTTGTTGAAAGGAAGCAGCTGATGGAAGCCGTTGGACTGATTTGTACCTTCAAGTTAAGTGACAAGTTTCCTCCCGGACCACTCCTAAAAGATTACATGGAGGAACAAATAAAGTGTTGCAGAAATGCTTACAAGAGAACCAAGTTACATAACGAAAAGGTTAGGATTGTGGACGACCAGATAACTCGTCTAAGAGCTGCGATTAACATGATCAAAAACCACAATCTGGAGTCGACGGAGTGTGCATTAACAATCATTGAAATTCAAATAACTCGACTGCAGCAAGTAAAGGAGAACTGGAGACTTCAGGCGGCGAATTTGGCAACTGTGCCAAAAAGAGGAACCAAACGTAGTAGCAGCACTCTTCCTACTGCGTTTGAACCCCGACAGCAGCTCAATAAAGTTCATCGGAAAGCTGTAGCAGTTCCTCAGCCTTCTGCATTGCAACTTTACACCCCGATCTCTCTGCAGTCAGATCTTTCATCTGTGCTGTTACATAAGGGGCAGTCTGGCGCCGCTCAGAACACTGGTATACACTACCCTCACTCTGGTACAAAGTTGTCGTCCCAAGTGGAACCACCCCAACCACTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

684

Amino Acids

78.67

Weight (kDa)

6.19

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 324 - 585 1.7e-49 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 871, 1970
AccB7I CCANNNNNTGG 1 cut(s) 1684
AccBSI CCGCTC 1 cut(s) 1976
AccI GTMKAC 4 cut(s) 119, 1065, 1691, 1990
AccII CGCG 1 cut(s) 774
AciI CCGC 3 cut(s) 361, 1769, 1974
AclWI GGATC 3 cut(s) 168, 253, 378
AcsI RAATTY 7 cut(s) 127, 757, 994, 1285, 1296, 1719, 1774
AcuI CTGAAG 2 cut(s) 707, 1748
AcyI GRCGYC 2 cut(s) 8, 1971
AfaI GTAC 2 cut(s) 1504, 2011
AfiI CCNNNNNNNGG 5 cut(s) 75, 1211, 1684, 1796, 2006
AflIII ACRYGT 1 cut(s) 201
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 135, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
Alw26I GTCTC 7 cut(s) 13, 179, 209, 262, 1109, 1189, 1753
AlwI GGATC 3 cut(s) 168, 253, 378
AlwNI CAGNNNCTG 1 cut(s) 1192
Ama87I CYCGRG 1 cut(s) 1442
AoxI GGCC 2 cut(s) 210, 837
ApeKI GCWGC 6 cut(s) 1186, 1474, 1655, 1738, 1815, 1849
ApoI RAATTY 7 cut(s) 127, 757, 994, 1285, 1296, 1719, 1774
ArsI GACNNNNNNTTYG 2 cut(s) 2006, 2038
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 1973
AspS9I GGNCC 2 cut(s) 139, 1535
AsuC2I CCSGG 1 cut(s) 1533
AsuHPI GGTGA 5 cut(s) 302, 529, 1139, 1194, 1234
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 1442
AvaII GGWCC 2 cut(s) 139, 1535
BanI GGYRCC 2 cut(s) 871, 1970
BbvCI CCTCAGC 1 cut(s) 1887
BbvI GCAGC 6 cut(s) 1198, 1486, 1642, 1750, 1827, 1861
BccI CCATC 3 cut(s) 424, 1166, 1474
BceAI ACGGC 1 cut(s) 1472
BcgI CGANNNNNNTGC 2 cut(s) 1906, 1940
BciT130I CCWGG 2 cut(s) 137, 263
BclI TGATCA 1 cut(s) 1668
BcnI CCSGG 1 cut(s) 1533
BcoDI GTCTC 7 cut(s) 13, 179, 209, 262, 1109, 1189, 1753
BfaI CTAG 3 cut(s) 929, 1319, 1403
BfmI CTRYAG 3 cut(s) 1736, 1875, 1925
BfoI RGCGCY 1 cut(s) 1974
BglII AGATCT 1 cut(s) 1933
BisI GCNGC 8 cut(s) 1187, 1475, 1656, 1739, 1770, 1816, 1850, 1974
BlsI GCNGC 8 cut(s) 1188, 1476, 1657, 1740, 1771, 1817, 1851, 1975
Bme1390I CCNGG 3 cut(s) 137, 263, 1533
Bme18I GGWCC 2 cut(s) 139, 1535
BmeT110I CYCGRG 1 cut(s) 1442
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 139, 1535
BmiI GGNNCC 6 cut(s) 825, 873, 915, 1801, 1972, 2034
BmrFI CCNGG 3 cut(s) 137, 263, 1533
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 3 cut(s) 727, 1083, 1222
BmuI ACTGGG 1 cut(s) 1023
BpmI CTGGAG 3 cut(s) 365, 1706, 1777
Bpu10I CCTNAGC 1 cut(s) 1887
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 4 cut(s) 269, 296, 395, 1049
BpuMI CCSGG 1 cut(s) 1533
BsaHI GRCGYC 2 cut(s) 8, 1971
BsaJI CCNNGG 2 cut(s) 135, 1290
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 95, 125, 389, 419, 1206, 1236
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 1211, 1684, 1796, 2006
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 5 cut(s) 201, 348, 1018, 1760, 1990
Bse3DI GCAATG 3 cut(s) 516, 1242, 1898
BseBI CCWGG 2 cut(s) 137, 263
BseDI CCNNGG 2 cut(s) 135, 1290
BseGI GGATG 3 cut(s) 1098, 1237, 1383
BseLI CCNNNNNNNGG 5 cut(s) 75, 1211, 1684, 1796, 2006
BseMI GCAATG 3 cut(s) 516, 1242, 1898
BseMII CTCAG 5 cut(s) 600, 1184, 1400, 1901, 1991
BseNI ACTGG 5 cut(s) 201, 348, 1018, 1760, 1990
BseRI GAGGAG 2 cut(s) 44, 668
BseXI GCAGC 6 cut(s) 1198, 1486, 1642, 1750, 1827, 1861
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 212, 839
BshNI GGYRCC 2 cut(s) 871, 1970
BsiEI CGRYCG 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 1442
BsiSI CCGG 3 cut(s) 869, 1212, 1533
BslFI GGGAC 2 cut(s) 1468, 2008
BslI CCNNNNNNNGG 5 cut(s) 75, 1211, 1684, 1796, 2006
BsmAI GTCTC 7 cut(s) 13, 179, 209, 262, 1109, 1189, 1753
BsmBI CGTCTC 2 cut(s) 179, 209
BsmFI GGGAC 2 cut(s) 1468, 2008
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 2 cut(s) 212, 839
BsoBI CYCGRG 1 cut(s) 1442
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
BspACI CCGC 3 cut(s) 361, 1769, 1974
BspANI GGCC 2 cut(s) 212, 839
BspCNI CTCAG 5 cut(s) 601, 1185, 1399, 1900, 1990
BspFNI CGCG 1 cut(s) 774
BspLI GGNNCC 6 cut(s) 825, 873, 915, 1801, 1972, 2034
BspMAI CTGCAG 2 cut(s) 1740, 1929
BspPI GGATC 3 cut(s) 168, 253, 378
BspT104I TTCGAA 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 871, 1970
BsrBI CCGCTC 1 cut(s) 1976
BsrDI GCAATG 3 cut(s) 516, 1242, 1898
BsrFI RCCGGY 1 cut(s) 868
BsrI ACTGG 5 cut(s) 201, 348, 1018, 1760, 1990
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 135, 1290
BssMI GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
BssNAI GTATAC 1 cut(s) 1991
BssNI GRCGYC 2 cut(s) 8, 1971
BssT1I CCWWGG 1 cut(s) 1290
Bst1107I GTATAC 1 cut(s) 1991
Bst2UI CCWGG 2 cut(s) 137, 263
Bst4CI ACNGT 2 cut(s) 1786, 2049
Bst6I CTCTTC 3 cut(s) 416, 468, 1827
BstACI GRCGYC 2 cut(s) 8, 1971
BstAPI GCANNNNNTGC 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 241
BstDEI CTNAG 8 cut(s) 301, 609, 784, 1193, 1386, 1649, 1887, 1977
BstF5I GGATG 3 cut(s) 1098, 1237, 1383
BstFNI CGCG 1 cut(s) 774
BstH2I RGCGCY 1 cut(s) 1974
BstHHI GCGC 1 cut(s) 1973
BstKTI GATC 7 cut(s) 163, 261, 373, 832, 1671, 1920, 1936
BstMAI GTCTC 7 cut(s) 13, 179, 209, 262, 1109, 1189, 1753
BstMBI GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 40, 1778
BstNI CCWGG 2 cut(s) 137, 263
BstNSI RCATGY 1 cut(s) 1211
BstSCI CCNGG 3 cut(s) 135, 261, 1531
BstSFI CTRYAG 3 cut(s) 1736, 1875, 1925
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 6 cut(s) 1198, 1486, 1642, 1750, 1827, 1861
BstX2I RGATCY 2 cut(s) 370, 1933
BstYI RGATCY 2 cut(s) 370, 1933
BstZ17I GTATAC 1 cut(s) 1991
BsuRI GGCC 2 cut(s) 212, 839
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 3 cut(s) 1098, 1237, 1383
BtsIMutI CAGTG 2 cut(s) 1983, 2045
CaiI CAGNNNCTG 1 cut(s) 1192
CfoI GCGC 1 cut(s) 1973
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 139, 1535
Csp6I GTAC 2 cut(s) 1503, 2010
CspCI CAANNNNNGTGG 1 cut(s) 2030
CviAII CATG 9 cut(s) 91, 100, 332, 800, 1001, 1139, 1208, 1555, 1666
CviQI GTAC 2 cut(s) 1503, 2010
DdeI CTNAG 8 cut(s) 301, 609, 784, 1193, 1386, 1649, 1887, 1977
DinI GGCGCC 1 cut(s) 1972
DpnI GATC 7 cut(s) 162, 260, 372, 831, 1670, 1919, 1935
DpnII GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 3 cut(s) 416, 468, 1827
EarI CTCTTC 3 cut(s) 416, 468, 1827
Eco130I CCWWGG 1 cut(s) 1290
Eco47I GGWCC 2 cut(s) 139, 1535
Eco57I CTGAAG 2 cut(s) 707, 1748
Eco88I CYCGRG 1 cut(s) 1442
EcoRI GAATTC 1 cut(s) 1285
EcoRII CCWGG 2 cut(s) 135, 261
EcoT14I CCWWGG 1 cut(s) 1290
EgeI GGCGCC 1 cut(s) 1972
EheI GGCGCC 1 cut(s) 1972
ErhI CCWWGG 1 cut(s) 1290
Esp3I CGTCTC 2 cut(s) 179, 209
FaeI CATG 9 cut(s) 94, 103, 335, 803, 1004, 1142, 1211, 1558, 1669
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 2 cut(s) 1468, 2008
FatI CATG 9 cut(s) 90, 99, 331, 799, 1000, 1138, 1207, 1554, 1665
FbaI TGATCA 1 cut(s) 1668
FblI GTMKAC 4 cut(s) 119, 1065, 1691, 1990
Fnu4HI GCNGC 8 cut(s) 1187, 1475, 1656, 1739, 1770, 1816, 1850, 1974
FokI GGATG 3 cut(s) 1105, 1244, 1390
Fsp4HI GCNGC 8 cut(s) 1187, 1475, 1656, 1739, 1770, 1816, 1850, 1974
FspBI CTAG 3 cut(s) 929, 1319, 1403
GlaI GCGC 1 cut(s) 1972
GluI GCNGC 8 cut(s) 1187, 1475, 1656, 1739, 1770, 1816, 1850, 1974
GsuI CTGGAG 3 cut(s) 365, 1706, 1777
HaeII RGCGCY 1 cut(s) 1974
HaeIII GGCC 2 cut(s) 212, 839
HapII CCGG 3 cut(s) 869, 1212, 1533
HhaI GCGC 1 cut(s) 1973
Hin1I GRCGYC 2 cut(s) 8, 1971
Hin1II CATG 9 cut(s) 94, 103, 335, 803, 1004, 1142, 1211, 1558, 1669
Hin6I GCGC 1 cut(s) 1971
HinP1I GCGC 1 cut(s) 1971
HincII GTYRAC 3 cut(s) 66, 120, 1692
HindII GTYRAC 3 cut(s) 66, 120, 1692
HindIII AAGCTT 2 cut(s) 572, 1367
HpaII CCGG 3 cut(s) 869, 1212, 1533
HphI GGTGA 5 cut(s) 302, 529, 1139, 1194, 1234
Hpy166II GTNNAC 6 cut(s) 66, 120, 1066, 1630, 1692, 1991
Hpy188I TCNGA 7 cut(s) 13, 143, 610, 1416, 1869, 1933, 1980
Hpy188III TCNNGA 8 cut(s) 149, 164, 374, 567, 746, 1403, 1453, 1685
Hpy8I GTNNAC 6 cut(s) 66, 120, 1066, 1630, 1692, 1991
Hpy99I CGWCG 3 cut(s) 13, 64, 1696
HpyAV CCTTC 8 cut(s) 202, 388, 457, 520, 550, 814, 1516, 1902
HpyCH4III ACNGT 2 cut(s) 1786, 2049
HpyCH4IV ACGT 3 cut(s) 59, 201, 1807
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 1778
HpyF3I CTNAG 8 cut(s) 301, 609, 784, 1193, 1386, 1649, 1887, 1977
HpySE526I ACGT 3 cut(s) 59, 201, 1807
Hsp92I GRCGYC 2 cut(s) 8, 1971
Hsp92II CATG 9 cut(s) 94, 103, 335, 803, 1004, 1142, 1211, 1558, 1669
HspAI GCGC 1 cut(s) 1971
KasI GGCGCC 1 cut(s) 1970
Ksp22I TGATCA 1 cut(s) 1668
Kzo9I GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
LmnI GCTCC 2 cut(s) 31, 235
Lsp1109I GCAGC 6 cut(s) 1198, 1486, 1642, 1750, 1827, 1861
LweI GCATC 3 cut(s) 727, 1083, 1222
MaeI CTAG 3 cut(s) 929, 1319, 1403
MaeII ACGT 3 cut(s) 59, 201, 1807
MaeIII GTNAC 8 cut(s) 296, 726, 974, 1009, 1150, 1517, 1602, 1950
MalI GATC 7 cut(s) 162, 260, 372, 831, 1670, 1919, 1935
MbiI CCGCTC 1 cut(s) 1976
MboI GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
MfeI CAATTG 2 cut(s) 23, 485
MflI RGATCY 2 cut(s) 370, 1933
Mly113I GGCGCC 1 cut(s) 1971
MlyI GAGTC 7 cut(s) 299, 304, 419, 971, 1191, 1450, 1697
MmeI TCCRAC 3 cut(s) 135, 1065, 1471
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 9 cut(s) 84, 320, 351, 500, 971, 983, 1514, 1662, 1706
MspA1I CMGCKG 1 cut(s) 1477
MspI CCGG 3 cut(s) 869, 1212, 1533
MspR9I CCNGG 3 cut(s) 137, 263, 1533
MunI CAATTG 2 cut(s) 23, 485
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 137, 263
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 2 cut(s) 40, 1778
NarI GGCGCC 1 cut(s) 1971
NciI CCSGG 1 cut(s) 1533
NdeII GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
NlaIII CATG 9 cut(s) 94, 103, 335, 803, 1004, 1142, 1211, 1558, 1669
NlaIV GGNNCC 6 cut(s) 825, 873, 915, 1801, 1972, 2034
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 5 cut(s) 296, 726, 974, 1009, 1517
NspI RCATGY 1 cut(s) 1211
NspV TTCGAA 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 121, 169
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 4 cut(s) 481, 658, 788, 920
PflMI CCANNNNNTGG 1 cut(s) 1684
PfoI TCCNGGA 2 cut(s) 261, 1531
PkrI GCNGC 8 cut(s) 1188, 1476, 1657, 1740, 1771, 1817, 1851, 1975
PleI GAGTC 7 cut(s) 299, 303, 418, 971, 1191, 1450, 1696
PluTI GGCGCC 1 cut(s) 1974
PpsI GAGTC 7 cut(s) 299, 303, 418, 971, 1191, 1450, 1696
Psp6I CCWGG 2 cut(s) 135, 261
PspGI CCWGG 2 cut(s) 135, 261
PspN4I GGNNCC 6 cut(s) 825, 873, 915, 1801, 1972, 2034
PspPI GGNCC 2 cut(s) 139, 1535
PstI CTGCAG 2 cut(s) 1740, 1929
PstNI CAGNNNCTG 1 cut(s) 1192
PsuI RGATCY 2 cut(s) 370, 1933
PvuII CAGCTG 1 cut(s) 1477
RsaI GTAC 2 cut(s) 1504, 2011
RsaNI GTAC 2 cut(s) 1503, 2010
SalI GTCGAC 2 cut(s) 118, 1690
SaqAI TTAA 9 cut(s) 84, 320, 351, 500, 971, 983, 1514, 1662, 1706
SatI GCNGC 8 cut(s) 1187, 1475, 1656, 1739, 1770, 1816, 1850, 1974
Sau3AI GATC 7 cut(s) 160, 258, 370, 829, 1668, 1917, 1933
Sau96I GGNCC 2 cut(s) 139, 1535
SchI GAGTC 7 cut(s) 299, 304, 419, 971, 1191, 1450, 1697
ScrFI CCNGG 3 cut(s) 137, 263, 1533
SfaNI GCATC 3 cut(s) 727, 1083, 1222
SfcI CTRYAG 3 cut(s) 1736, 1875, 1925
SfoI GGCGCC 1 cut(s) 1972
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 139, 1535
SmlI CTYRAG 4 cut(s) 248, 311, 374, 1028
SmoI CTYRAG 4 cut(s) 248, 311, 374, 1028
SsiI CCGC 3 cut(s) 361, 1769, 1974
SspDI GGCGCC 1 cut(s) 1970
SspI AATATT 1 cut(s) 1115
SspMI CTAG 3 cut(s) 929, 1319, 1403
StyD4I CCNGG 3 cut(s) 135, 261, 1531
StyI CCWWGG 1 cut(s) 1290
TaaI ACNGT 2 cut(s) 1786, 2049
TaiI ACGT 3 cut(s) 62, 204, 1810
TaqI TCGA 7 cut(s) 119, 241, 566, 732, 903, 1691, 1732
TaqII GACCGA 1 cut(s) 105
TauI GCSGC 2 cut(s) 1772, 1976
TfiI GAWTC 4 cut(s) 481, 658, 788, 920
Tru1I TTAA 9 cut(s) 84, 320, 351, 500, 971, 983, 1514, 1662, 1706
Tru9I TTAA 9 cut(s) 84, 320, 351, 500, 971, 983, 1514, 1662, 1706
TscAI CASTG 2 cut(s) 1990, 2052
TseFI GTSAC 5 cut(s) 296, 726, 974, 1009, 1517
TseI GCWGC 6 cut(s) 1186, 1474, 1655, 1738, 1815, 1849
Tsp45I GTSAC 5 cut(s) 296, 726, 974, 1009, 1517
TspGWI ACGGA 2 cut(s) 233, 1709
TspRI CASTG 2 cut(s) 1990, 2052
Van91I CCANNNNNTGG 1 cut(s) 1684
VpaK11BI GGWCC 2 cut(s) 139, 1535
XapI RAATTY 7 cut(s) 127, 757, 994, 1285, 1296, 1719, 1774
XbaI TCTAGA 1 cut(s) 1402
XceI RCATGY 1 cut(s) 1211
XmiI GTMKAC 4 cut(s) 119, 1065, 1691, 1990
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 3 cut(s) 929, 1319, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.