Rmu_sc0009015.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009015.1
OG0000126
Physical Location & Seq
Forward (+)
21528 .. 25865
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009015.1_g000008.1.cds

Sequence Viewer

Length: 3204 bp
atgacggaagccggagcgggttttaaccgggtccgggccgggttccgggggctaatggagctggcgaagaagctggaaggggaagacatgaagctgcggcgtgatttggaagcgaaggcgatggagattgaagaaggtaagagccagctgaacttgcttaaattaaagattgtggaaaagaatagagaggtttgtgatagggagaagcggattgaggagcttgagaagatggttagggtgaatgatgatgtgaagttgagagtggaggaattgaagggtttagaggagatgattgcgaaatgtgatgaggaggtgaggttgaagaaggggaggattagtttgattcagaaatcgatgatgcaatgctcgtatgcgttggaagcgagggaggagaagatcagggagagtaatgtggcttttggtttggtgaagaaggccatggaggagtggtgctgtaaagttgagatgaaggagagggagctagaggggtgtgtggcgacacttgaattgaaagaggaagaagtggagaagaaaattgaggaacttgagttgtttgagaagagggtcaaggattgcctggatgatgtggagttgaaagtagagcattttgattcagttgaaaaatcgatgcaggaagagagacagcagttggatgcactgcaagagtcggtgcgtgagggcgaaaggaatttggattcagttcgaaaggcagcagaggagcgtgagaaggttttggactcggtaggccagggacttgaaatgaaagagagggaactcgaagagcaggccagtgagcttgagtttaatgagagactagtggaattgagagctgaggaagttaatgcaaaggataagagggtcaatgaacgcctcaatgaggttcaaatgaaggaaaaatttttggaattatttgaaaaatcaatacaagaggacaaagaccatttggatttggtccaaaagttggcagcagagcgtgaaaagcagttggattcactccaaacaacggtgctagatcgtgaaaataatttgttttcacttcaaaaatcggtacaagagcgtgaaaaaaagttggattcactatccgatggacttcaaaggagagaaagggaacttgaaaagcaggccaaagagcttgaattgacgcagaaacaatttgattctcaaaggaaggctaagcatttggaacctacccctgctactaaaaatgctagtgttgtttcatctacaagtgatcaatcctggatcaacatggatggtagaagcttacagttggtcatgaatgaccaagtggaaaaaattgacttgacaggtagccgaatgtcagctgttctacaagcatcatcagacccggcaaaattggttttggagcagaaacaatttgattctcaaaggaaggctaagcatttggaacctacccctgctgctaaaaatgctagtgttgtttcatctacaagtgatcaatcctggatcaacatggatggtagaagcttacagttggtcatgaatgagcaagtggaaaaaattgacttgacaggtagccgaatgtcagctgttctacaagcatcatcagacccggcaaaattggttttggatgcaatgcaagggttttatccgtcaaatcctactgtggaaaacagagagtttgagtcacattatttgagggtcgtaagaaagagttgtattcttttgctacaggagttaaagagaatgtcaccactaattaatcctcaggtgagagaagaagcagttactgtcgaaaacagagagtttgagtcacatttgagggttgtaagaaagagttgtattcttttgctacaggagttaaagagaatgtcaccactaattaatcctcaggtgagagaagaagcagtgaaattggcagctgattggaaagagaagatggcagttaccactgataatagttgggaggctttgggctttttgcggcttatcactacgtatgaattgacaagtatttatgatttgagggagcttcgaagtgttcttgctatggtttctcagccagaacaagctgctgaattaagtagggcacttggtatcacagataaggcacctgggacgactgttgtttcttccattgtcaagactgagcgatcagagtcttcgctggctagaaatgaagcaactctttctccttcgaataaatatttacagaatgaaaggattgtttctcttccttccattgccaagactgagggacccaaatcttttggggctagatttgcagcaactctttcttcaccaaataatgctgagggaccagaatcttctctctctagaaatgcagcaactctatattcacctaataatgctttacagaaaaatctgttggtcactcttaaatcatcatcagaccctgcaaagcttgtgttggattcgatgcaagggtctttgacgtattactggagaaatggagatgttagttccaaagaaaaggttgtatctggtaatattactctattgaagattctaatgggactatcaacacatgttggacctcatctgaaagaaaatgcaacaaatctagcatcccagtggaaagaaaagttgagagctgatactgaagattcatcggagagtttgggatatttgctgtttatagctatgtatggattgcttggaaccttacgtgaagatgagattgtaatgcttcttagaagggtttcgcagcataagcggtctctggagttatgtcagacacacggttttgcaaattatatccctggttttatacagaagcttattgaaaggaaactactgatggtggctgttagatttatttgtgccttcaaattatttgacaagctccccccagtgccactcttaaaagaacatgtggatgatgtaatgatgtgttccaaagtaatttgcaggtcacagatgatacctgatgaaaaggataaggctctggatggtaaaatatctgatctcagagctgccattcaatgcatcaaagactacaaccttgagtctgaatacccgtccaagactgttgaattgcaaatagttcagcttgatgaaatgcgcaaggaaaaatggagaagtttggaaccatctctagtacccaaagttgaacaagaagagagaaaaaggaagaagccttgtactagctcttctgccccaaagttacaaccacgaaaggtgccgaaaataaaattcgtcttcagtggttcgagaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

1067

Amino Acids

121.71

Weight (kDa)

6.09

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 3047
Acc36I ACCTGC 1 cut(s) 2883
AccB1I GGYRCC 2 cut(s) 2071, 3163
AccB7I CCANNNNNTGG 1 cut(s) 961
AccBSI CCGCTC 1 cut(s) 17
AciI CCGC 5 cut(s) 17, 97, 208, 1945, 2698
AclWI GGATC 2 cut(s) 1250, 1475
AcsI RAATTY 3 cut(s) 688, 896, 3176
AcuI CTGAAG 2 cut(s) 2604, 3169
AfaI GTAC 3 cut(s) 1050, 3084, 3127
AfiI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
AflIII ACRYGT 2 cut(s) 2509, 2854
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 6 cut(s) 576, 747, 1238, 1463, 2074, 2743
AjuI GAANNNNNNNTTGG 2 cut(s) 2333, 2365
Alw26I GTCTC 4 cut(s) 634, 805, 2706, 3190
AlwI GGATC 2 cut(s) 1250, 1475
AlwNI CAGNNNCTG 2 cut(s) 1751, 2378
AoxI GGCC 5 cut(s) 36, 435, 745, 786, 1122
ApoI RAATTY 3 cut(s) 688, 896, 3176
AseI ATTAAT 2 cut(s) 1722, 1845
Asp700I GAANNNNTTC 1 cut(s) 2683
AspLEI GCGC 1 cut(s) 3048
AspS9I GGNCC 6 cut(s) 31, 36, 952, 2219, 2279, 2516
AsuC2I CCSGG 6 cut(s) 29, 35, 40, 47, 1349, 1574
AsuHPI GGTGA 9 cut(s) 250, 325, 439, 1704, 1744, 1827, 1867, 2253, 2313
AsuII TTCGAA 3 cut(s) 703, 1996, 2159
AvaII GGWCC 5 cut(s) 31, 952, 2219, 2279, 2516
AxyI CCTNAGG 2 cut(s) 1728, 1851
BaeGI GKGCMC 1 cut(s) 2053
BanI GGYRCC 2 cut(s) 2071, 3163
BarI GAAGNNNNNNTAC 2 cut(s) 3118, 3150
BbsI GAAGAC 3 cut(s) 90, 2115, 3175
BbvCI CCTCAGC 2 cut(s) 831, 2274
BccI CCATC 9 cut(s) 115, 223, 1079, 1247, 1472, 1894, 2776, 2927, 3082
BciT130I CCWGG 6 cut(s) 578, 749, 1240, 1465, 2076, 2745
BclI TGATCA 2 cut(s) 1231, 1456
BcnI CCSGG 6 cut(s) 29, 35, 40, 47, 1349, 1574
BcoDI GTCTC 4 cut(s) 634, 805, 2706, 3190
BcuI ACTAGT 1 cut(s) 814
BfmI CTRYAG 2 cut(s) 1691, 1814
BfuAI ACCTGC 1 cut(s) 2883
BlpI GCTNAGC 2 cut(s) 1173, 1398
Bme18I GGWCC 5 cut(s) 31, 952, 2219, 2279, 2516
BmgT120I GGNCC 6 cut(s) 31, 36, 952, 2219, 2279, 2516
BmrI ACTGGG 2 cut(s) 2548, 2828
BmsI GCATC 9 cut(s) 348, 618, 643, 1346, 1571, 1582, 2391, 2558, 2979
BmuI ACTGGG 2 cut(s) 2548, 2828
BpiI GAAGAC 3 cut(s) 90, 2115, 3175
BpmI CTGGAG 2 cut(s) 2446, 2726
Bpu10I CCTNAGC 2 cut(s) 831, 2274
Bpu1102I GCTNAGC 2 cut(s) 1173, 1398
Bpu14I TTCGAA 3 cut(s) 703, 1996, 2159
BpuEI CTTGAG 4 cut(s) 242, 566, 818, 3008
BpuMI CCSGG 6 cut(s) 29, 35, 40, 47, 1349, 1574
Bsa29I ATCGAT 2 cut(s) 353, 626
BsaAI YACGTR 2 cut(s) 1959, 2651
BsaI GGTCTC 2 cut(s) 2706, 3190
BsaJI CCNNGG 5 cut(s) 46, 438, 748, 2075, 2743
BsaXI ACNNNNNCTCC 8 cut(s) 302, 322, 332, 352, 434, 464, 2137, 2167
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
Bse1I ACTGG 4 cut(s) 789, 2429, 2554, 2834
Bse21I CCTNAGG 2 cut(s) 1728, 1851
Bse3DI GCAATG 3 cut(s) 368, 1602, 2202
BseBI CCWGG 6 cut(s) 578, 749, 1240, 1465, 2076, 2745
BseCI ATCGAT 2 cut(s) 353, 626
BseDI CCNNGG 5 cut(s) 46, 438, 748, 2075, 2743
BseGI GGATG 8 cut(s) 586, 658, 1258, 1483, 1597, 2549, 2866, 2938
BseLI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
BseMI GCAATG 3 cut(s) 368, 1602, 2202
BseMII CTCAG 8 cut(s) 822, 1742, 1865, 2033, 2100, 2205, 2265, 2965
BseNI ACTGG 4 cut(s) 789, 2429, 2554, 2834
BseRI GAGGAG 6 cut(s) 230, 299, 323, 404, 458, 731
BseSI GKGCMC 1 cut(s) 2053
BshFI GGCC 5 cut(s) 38, 437, 747, 788, 1124
BshNI GGYRCC 2 cut(s) 2071, 3163
BshVI ATCGAT 2 cut(s) 353, 626
BsiSI CCGG 7 cut(s) 12, 28, 34, 39, 46, 1349, 1574
BslFI GGGAC 5 cut(s) 765, 2092, 2232, 2292, 2511
BslI CCNNNNNNNGG 5 cut(s) 34, 45, 877, 961, 1003
BsmAI GTCTC 4 cut(s) 634, 805, 2706, 3190
BsmFI GGGAC 5 cut(s) 765, 2092, 2232, 2292, 2511
BsnI GGCC 5 cut(s) 38, 437, 747, 788, 1124
Bso31I GGTCTC 2 cut(s) 2706, 3190
Bsp119I TTCGAA 3 cut(s) 703, 1996, 2159
Bsp1286I GDGCHC 1 cut(s) 2053
Bsp143I GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
Bsp1720I GCTNAGC 2 cut(s) 1173, 1398
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 5 cut(s) 17, 97, 208, 1945, 2698
BspANI GGCC 5 cut(s) 38, 437, 747, 788, 1124
BspCNI CTCAG 8 cut(s) 823, 1741, 1864, 2032, 2101, 2206, 2266, 2964
BspDI ATCGAT 2 cut(s) 353, 626
BspHI TCATGA 2 cut(s) 1275, 1500
BspMI ACCTGC 1 cut(s) 2883
BspPI GGATC 2 cut(s) 1250, 1475
BspQI GCTCTTC 2 cut(s) 774, 3139
BspT104I TTCGAA 3 cut(s) 703, 1996, 2159
BspT107I GGYRCC 2 cut(s) 2071, 3163
BspTNI GGTCTC 2 cut(s) 2706, 3190
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 3 cut(s) 368, 1602, 2202
BsrI ACTGG 4 cut(s) 789, 2429, 2554, 2834
BssECI CCNNGG 5 cut(s) 46, 438, 748, 2075, 2743
BssMI GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 6 cut(s) 578, 749, 1240, 1465, 2076, 2745
Bst4CI ACNGT 8 cut(s) 1006, 1269, 1494, 1627, 1753, 2086, 2726, 3013
Bst6I CTCTTC 6 cut(s) 554, 630, 774, 2199, 3096, 3139
BstBAI YACGTR 2 cut(s) 1959, 2651
BstBI TTCGAA 3 cut(s) 703, 1996, 2159
BstC8I GCNNGC 5 cut(s) 63, 146, 786, 1122, 2130
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 875
BstF5I GGATG 8 cut(s) 586, 658, 1258, 1483, 1597, 2549, 2866, 2938
BstHHI GCGC 1 cut(s) 3048
BstKTI GATC 8 cut(s) 399, 1015, 1234, 1245, 1459, 1470, 2117, 2950
BstMAI GTCTC 4 cut(s) 634, 805, 2706, 3190
BstMBI GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
BstMWI GCNNNNNNNGC 7 cut(s) 58, 154, 380, 979, 1430, 2243, 2695
BstNI CCWGG 6 cut(s) 578, 749, 1240, 1465, 2076, 2745
BstNSI RCATGY 2 cut(s) 2513, 2858
BstSFI CTRYAG 2 cut(s) 1691, 1814
BstSLI GKGCMC 1 cut(s) 2053
BstSNI TACGTA 1 cut(s) 1959
BstV2I GAAGAC 3 cut(s) 90, 2115, 3175
Bsu15I ATCGAT 2 cut(s) 353, 626
Bsu36I CCTNAGG 2 cut(s) 1728, 1851
BsuRI GGCC 5 cut(s) 38, 437, 747, 788, 1124
BsuTUI ATCGAT 2 cut(s) 353, 626
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 8 cut(s) 586, 658, 1258, 1483, 1597, 2549, 2866, 2938
BtsI GCAGTG 2 cut(s) 656, 1875
BtsIMutI CAGTG 7 cut(s) 656, 796, 1875, 1911, 2561, 2841, 3193
BveI ACCTGC 1 cut(s) 2883
Cac8I GCNNGC 5 cut(s) 63, 146, 786, 1122, 2130
CaiI CAGNNNCTG 2 cut(s) 1751, 2378
CciI TCATGA 2 cut(s) 1275, 1500
CfoI GCGC 1 cut(s) 3048
Cfr13I GGNCC 6 cut(s) 31, 36, 952, 2219, 2279, 2516
ClaI ATCGAT 2 cut(s) 353, 626
CseI GACGC 1 cut(s) 1150
Csp6I GTAC 3 cut(s) 1049, 3083, 3126
CviAII CATG 8 cut(s) 88, 439, 1249, 1276, 1474, 1501, 2510, 2855
CviQI GTAC 3 cut(s) 1049, 3083, 3126
DpnI GATC 8 cut(s) 398, 1014, 1233, 1244, 1458, 1469, 2116, 2949
DpnII GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
Eam1104I CTCTTC 6 cut(s) 554, 630, 774, 2199, 3096, 3139
EarI CTCTTC 6 cut(s) 554, 630, 774, 2199, 3096, 3139
Eco105I TACGTA 1 cut(s) 1959
Eco130I CCWWGG 1 cut(s) 438
Eco31I GGTCTC 2 cut(s) 2706, 3190
Eco47I GGWCC 5 cut(s) 31, 952, 2219, 2279, 2516
Eco57I CTGAAG 2 cut(s) 2604, 3169
Eco81I CCTNAGG 2 cut(s) 1728, 1851
EcoNI CCTNNNNNAGG 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 2219
EcoRII CCWGG 6 cut(s) 576, 747, 1238, 1463, 2074, 2743
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 2972
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 8 cut(s) 91, 442, 1252, 1279, 1477, 1504, 2513, 2858
FalI AAGNNNNNCTT 2 cut(s) 2133, 2165
FaqI GGGAC 5 cut(s) 765, 2092, 2232, 2292, 2511
FatI CATG 8 cut(s) 87, 438, 1248, 1275, 1473, 1500, 2509, 2854
FauI CCCGC 1 cut(s) 10
FbaI TGATCA 2 cut(s) 1231, 1456
FokI GGATG 8 cut(s) 593, 665, 1265, 1490, 1604, 2536, 2873, 2945
FspI TGCGCA 1 cut(s) 3047
GlaI GCGC 1 cut(s) 3047
GsuI CTGGAG 2 cut(s) 2446, 2726
HaeIII GGCC 5 cut(s) 38, 437, 747, 788, 1124
HapII CCGG 7 cut(s) 12, 28, 34, 39, 46, 1349, 1574
HgaI GACGC 1 cut(s) 1150
HhaI GCGC 1 cut(s) 3048
Hin1II CATG 8 cut(s) 91, 442, 1252, 1279, 1477, 1504, 2513, 2858
Hin6I GCGC 1 cut(s) 3046
HinP1I GCGC 1 cut(s) 3046
HindIII AAGCTT 4 cut(s) 1261, 1486, 2384, 2759
HpaII CCGG 7 cut(s) 12, 28, 34, 39, 46, 1349, 1574
HphI GGTGA 9 cut(s) 250, 325, 439, 1704, 1744, 1827, 1867, 2253, 2313
Hpy188III TCNNGA 8 cut(s) 1016, 1276, 1501, 2104, 2298, 2705, 2930, 3195
HpyCH4III ACNGT 8 cut(s) 1006, 1269, 1494, 1627, 1753, 2086, 2726, 3013
HpyCH4IV ACGT 3 cut(s) 1958, 2417, 2650
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 154, 380, 979, 1430, 2243, 2695
HpySE526I ACGT 3 cut(s) 1958, 2417, 2650
Hsp92II CATG 8 cut(s) 91, 442, 1252, 1279, 1477, 1504, 2513, 2858
HspAI GCGC 1 cut(s) 3046
KflI GGGWCCC 1 cut(s) 2219
Ksp22I TGATCA 2 cut(s) 1231, 1456
Kzo9I GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
LguI GCTCTTC 2 cut(s) 774, 3139
LmnI GCTCC 8 cut(s) 14, 58, 217, 478, 718, 1366, 1990, 2832
LweI GCATC 9 cut(s) 348, 618, 643, 1346, 1571, 1582, 2391, 2558, 2979
MaeII ACGT 3 cut(s) 1958, 2417, 2650
MaeIII GTNAC 9 cut(s) 1647, 1710, 1747, 1773, 1833, 1906, 2353, 2895, 3147
MalI GATC 8 cut(s) 398, 1014, 1233, 1244, 1458, 1469, 2116, 2949
MbiI CCGCTC 1 cut(s) 17
MboI GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
MhlI GDGCHC 1 cut(s) 2053
MlyI GAGTC 6 cut(s) 674, 731, 1655, 1781, 2129, 2999
MmeI TCCRAC 6 cut(s) 357, 630, 966, 1050, 2373, 2494
Mph1103I ATGCAT 1 cut(s) 2972
MroXI GAANNNNTTC 1 cut(s) 2683
MslI CAYNNNNRTG 2 cut(s) 2554, 2859
MspA1I CMGCKG 4 cut(s) 148, 1325, 1550, 1883
MspI CCGG 7 cut(s) 12, 28, 34, 39, 46, 1349, 1574
MvaI CCWGG 6 cut(s) 578, 749, 1240, 1465, 2076, 2745
MwoI GCNNNNNNNGC 7 cut(s) 58, 154, 380, 979, 1430, 2243, 2695
NciI CCSGG 6 cut(s) 29, 35, 40, 47, 1349, 1574
NcoI CCATGG 1 cut(s) 438
NdeII GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
NlaIII CATG 8 cut(s) 91, 442, 1252, 1279, 1477, 1504, 2513, 2858
NmuCI GTSAC 6 cut(s) 1647, 1710, 1773, 1833, 2353, 2895
NsbI TGCGCA 1 cut(s) 3047
NsiI ATGCAT 1 cut(s) 2972
NspI RCATGY 2 cut(s) 2513, 2858
NspV TTCGAA 3 cut(s) 703, 1996, 2159
PagI TCATGA 2 cut(s) 1275, 1500
PciI ACATGT 2 cut(s) 2509, 2854
PciSI GCTCTTC 2 cut(s) 774, 3139
PdmI GAANNNNTTC 1 cut(s) 2683
PflMI CCANNNNNTGG 1 cut(s) 961
PfoI TCCNGGA 2 cut(s) 1238, 1463
PleI GAGTC 6 cut(s) 673, 731, 1654, 1780, 2128, 2998
PpsI GAGTC 6 cut(s) 673, 731, 1654, 1780, 2128, 2998
Ppu21I YACGTR 2 cut(s) 1959, 2651
PpuMI RGGWCCY 1 cut(s) 2219
PscI ACATGT 2 cut(s) 2509, 2854
PshBI ATTAAT 2 cut(s) 1722, 1845
Psp5II RGGWCCY 1 cut(s) 2219
Psp6I CCWGG 6 cut(s) 576, 747, 1238, 1463, 2074, 2743
PspGI CCWGG 6 cut(s) 576, 747, 1238, 1463, 2074, 2743
PspPI GGNCC 6 cut(s) 31, 36, 952, 2219, 2279, 2516
PspPPI RGGWCCY 1 cut(s) 2219
PstNI CAGNNNCTG 2 cut(s) 1751, 2378
PvuII CAGCTG 4 cut(s) 148, 1325, 1550, 1883
RsaI GTAC 3 cut(s) 1050, 3084, 3127
RsaNI GTAC 3 cut(s) 1049, 3083, 3126
RseI CAYNNNNRTG 2 cut(s) 2554, 2859
SapI GCTCTTC 2 cut(s) 774, 3139
Sau3AI GATC 8 cut(s) 396, 1012, 1231, 1242, 1456, 1467, 2114, 2947
Sau96I GGNCC 6 cut(s) 31, 36, 952, 2219, 2279, 2516
SchI GAGTC 6 cut(s) 674, 731, 1655, 1781, 2129, 2999
SduI GDGCHC 1 cut(s) 2053
SfaNI GCATC 9 cut(s) 348, 618, 643, 1346, 1571, 1582, 2391, 2558, 2979
SfcI CTRYAG 2 cut(s) 1691, 1814
SfuI TTCGAA 3 cut(s) 703, 1996, 2159
SinI GGWCC 5 cut(s) 31, 952, 2219, 2279, 2516
SmiMI CAYNNNNRTG 2 cut(s) 2554, 2859
SmlI CTYRAG 4 cut(s) 221, 545, 797, 2987
SmoI CTYRAG 4 cut(s) 221, 545, 797, 2987
SnaBI TACGTA 1 cut(s) 1959
SpeI ACTAGT 1 cut(s) 814
SsiI CCGC 5 cut(s) 17, 97, 208, 1945, 2698
SspI AATATT 2 cut(s) 2168, 2473
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 8 cut(s) 1006, 1269, 1494, 1627, 1753, 2086, 2726, 3013
TaiI ACGT 3 cut(s) 1961, 2420, 2653
TaqI TCGA 9 cut(s) 353, 626, 703, 777, 1755, 1996, 2159, 2399, 3194
TatI WGTACW 1 cut(s) 3125
TauI GCSGC 2 cut(s) 100, 1948
TscAI CASTG 7 cut(s) 663, 796, 1875, 1918, 2561, 2841, 3193
TseFI GTSAC 6 cut(s) 1647, 1710, 1773, 1833, 2353, 2895
Tsp45I GTSAC 6 cut(s) 1647, 1710, 1773, 1833, 2353, 2895
TspGWI ACGGA 2 cut(s) 20, 1602
TspRI CASTG 7 cut(s) 663, 796, 1875, 1918, 2561, 2841, 3193
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 5 cut(s) 31, 952, 2219, 2279, 2516
VspI ATTAAT 2 cut(s) 1722, 1845
XagI CCTNNNNNAGG 1 cut(s) 875
XapI RAATTY 3 cut(s) 688, 896, 3176
XbaI TCTAGA 1 cut(s) 2297
XceI RCATGY 2 cut(s) 2513, 2858
XmnI GAANNNNTTC 1 cut(s) 2683
Zsp2I ATGCAT 1 cut(s) 2972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.