Rh3CG050200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000126
Physical Location & Seq
Forward (+)
3413793 .. 3418492
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG050200.1

Sequence Viewer

Length: 1890 bp
ATGATGGAATGCCAGAGCAGAATCGATTCGAGGGAGAAGATAATGAGGGAAATGGAGTTGAAAGGGAGGGACTTTTGTTTGCTGAAGAAATCGATGGAGGATTGGTTATGTAAACTTGAATTGAGAAACAGGGAGCTTGATGGATGGGTTGAGGTTCTTGAGGTGAAGGACAAGGATGTTGAGTCCAAAGTTGAGGAACTCCATTTGATTGTTGAGAGGGTCAGTGAATGCCTTGATGAGGTTCAGGAGAAAGAAGAGCATTTCGTTTCGTTAGAAAAACCGATACAGGAGCACGAAATGCATTTGTGTTCACTCCAAAAGTTGGTGCAACAGCGTGACAAGGAGTTGGATTCACTGTCCCATGAACTTCAAAGGAAAGAGAGGCATCTTGAAGAGGTTGAATTGAAGATGGCGAAATTAGGACATGCGATTCCTTCATACGTAATTGATGATCATTCCAGCATTCATTGGGATGGTAGAGGCTTGCAAATGTTCATGAATGAGCAGTTGAAGAGAATATATTCAATGGGTAGCGAAATGTCAGCAATTCTTAAAGCCTCATCTGACCCAGCAAAATTGGTTTTGGATGCAATACAAGGATTTTACCCTTCAAGTTCAACTCTGGACAATAAGGAGACTCATTTTGATTTGACAGTTATTAGAAGGAGCTGTATTCTTTTGTTAGAGGATTTGAAGAGAATGTCACCACAAATTAATGCTCGGGTGAGAAACGAAGCAATAAAGTTGGCGGCTGACTGGAAGACTAAGATGACAATATCTAGTGAGAATACACAGGAGATTTTGGGGTTTTTGCGGCTTGTTAATACGTATGGATTGAGTTCGATGTATGATGCGAAAGATCTTCAAAGCCTTCTTGCTGTTGTTCATAAGCCCGAACAAGCATCTCAATCAAGTAGGGCCCTTGGTATCAAAGATAAAGCACCTGGGACCAGCATCATTTCTTCCCTTATCAAAACTGTGGAACCAGAATCTTCACTGGCTATAAATGCAACAACTCTCTCTTCTCCAAATCCTTCTTCCCAGAATGACATGTTGGCTTCTCTTTTATTGGTCTCTGACCCAGCAGAACATGTCTTGAATAGTGTGAAGAGATCATTTTCTCAGTACTGGAAACATGAAGATGTTAGTTTCAAAGAACGTATCATGTTGAATAACATGTCTTTGTTGGAGTGTCTAACGATTATCTCACCGCATATTGGACCTCATGTGAAAGAAGATGCAAAACTTCTTGCAGCCTATTGGAAACCAAAGATGACAGGCAATACTGAAAATTCAGTTGAGACTTTGGGATTTTTGCTGTTTATATCTACATATGGATTGGTTTCTACATTGAATACAGAGGAGATTATAAAGCTTCTTGAGGTGATATCTCAGAATAAAGGGGCTGTAGATTTATGTCAGACGCATGGTTATGCAGATAAGATCTCTGATTTTATTCGGAATCTGATAGAAAGGAAGCAACTGATGGATGCTGTTGGATTTATTTGCACCTTCAACCTAGCTGACAAGCTCCCCCCAATACCACTCTTAAAACAATATGTAGAGGATGCAAAGAAGCGTTCCGAAGTAACTTGCAGCTTAAAGATACTTCATGATGAAAAGGTTAAGATTGTAGACAACCTCATAGCTGATCTAAGAGCTGGGAAACAATGCATCAAAGAATACCATCTCGAGTGCGAATACCCATATGCGGACATTGAAATGCAAATAGTTCAGCTGGAAAAACTGAAGGAGAATTGGAGATGCTTGGCACCATCTCTTGGCTCCAGTATTGTTGAATCACAAGTGCAGAGAAAAAGAAAGAAGCCTAATACTAGTAGTTCTGCCCGTACGCGTGCATTTCCATCACAACAGCAGCGTAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

629

Amino Acids

71.84

Weight (kDa)

6.19

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 158 - 326 4.2e-33 Frigida-like protein
Frigida PF07899 348 - 586 7.1e-51 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1370
AccB1I GGYRCC 1 cut(s) 1771
AccB7I CCANNNNNTGG 2 cut(s) 322, 1781
AccI GTMKAC 1 cut(s) 1635
AccII CGCG 1 cut(s) 1855
AciI CCGC 4 cut(s) 749, 814, 1211, 1712
AcsI RAATTY 1 cut(s) 1291
AcuI CTGAAG 2 cut(s) 104, 1769
AfaI GTAC 2 cut(s) 1127, 1852
AfiI CCNNNNNNNGG 5 cut(s) 238, 322, 1217, 1711, 1781
AflIII ACRYGT 4 cut(s) 1050, 1090, 1176, 1853
AhlI ACTAGT 1 cut(s) 1835
AjnI CCWGG 1 cut(s) 943
AjuI GAANNNNNNNTTGG 4 cut(s) 1021, 1037, 1053, 1069
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 629, 1078, 1295
Ama87I CYCGRG 2 cut(s) 720, 1691
AoxI GGCC 1 cut(s) 918
ApaI GGGCCC 1 cut(s) 922
ApeKI GCWGC 3 cut(s) 1253, 1596, 1876
ApoI RAATTY 1 cut(s) 1291
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 2 cut(s) 25, 520
AspS9I GGNCC 4 cut(s) 918, 919, 948, 1220
AsuHPI GGTGA 5 cut(s) 175, 696, 736, 1200, 1396
AvaI CYCGRG 2 cut(s) 720, 1691
AvaII GGWCC 2 cut(s) 948, 1220
BaeGI GKGCMC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 1771
BanII GRGCYC 1 cut(s) 922
BbsI GAAGAC 1 cut(s) 767
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 1265, 1608
BccI CCATC 9 cut(s) 88, 134, 138, 403, 467, 1480, 1695, 1783, 1873
BciT130I CCWGG 1 cut(s) 945
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 3 cut(s) 629, 1078, 1295
BcuI ACTAGT 1 cut(s) 1835
BfaI CTAG 3 cut(s) 780, 1520, 1836
BfmI CTRYAG 1 cut(s) 1407
BglII AGATCT 2 cut(s) 859, 1443
BisI GCNGC 5 cut(s) 750, 815, 1254, 1597, 1877
BlsI GCNGC 5 cut(s) 751, 816, 1255, 1598, 1878
BmcAI AGTACT 1 cut(s) 1127
Bme1390I CCNGG 1 cut(s) 945
Bme18I GGWCC 2 cut(s) 948, 1220
BmeT110I CYCGRG 2 cut(s) 720, 1691
BmgT120I GGNCC 4 cut(s) 918, 919, 948, 1220
BmiI GGNNCC 5 cut(s) 920, 949, 984, 1773, 1786
BmrFI CCNGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 1771
BpuEI CTTGAG 2 cut(s) 179, 1400
Bsa29I ATCGAT 2 cut(s) 24, 92
BsaAI YACGTR 2 cut(s) 442, 828
BsaI GGTCTC 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 922, 944
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 322, 1217, 1711, 1781
Bse1I ACTGG 4 cut(s) 761, 1002, 1133, 1788
BseBI CCWGG 1 cut(s) 945
BseCI ATCGAT 2 cut(s) 24, 92
BseDI CCNNGG 2 cut(s) 922, 944
BseGI GGATG 6 cut(s) 149, 181, 478, 592, 1495, 1573
BseLI CCNNNNNNNGG 5 cut(s) 238, 322, 1217, 1711, 1781
BseMII CTCAG 2 cut(s) 1136, 1406
BseNI ACTGG 4 cut(s) 761, 1002, 1133, 1788
BseRI GAGGAG 1 cut(s) 1376
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 2 cut(s) 1265, 1608
BseYI CCCAGC 3 cut(s) 568, 1081, 1661
BsgI GTGCAG 1 cut(s) 1829
Bsh1236I CGCG 1 cut(s) 1855
BshFI GGCC 1 cut(s) 920
BshNI GGYRCC 1 cut(s) 1771
BshVI ATCGAT 2 cut(s) 24, 92
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 2 cut(s) 720, 1691
BsiWI CGTACG 1 cut(s) 1850
BslFI GGGAC 3 cut(s) 83, 343, 961
BslI CCNNNNNNNGG 5 cut(s) 238, 322, 1217, 1711, 1781
BsmAI GTCTC 3 cut(s) 629, 1078, 1295
BsmFI GGGAC 3 cut(s) 83, 343, 961
BsmI GAATGC 3 cut(s) 14, 233, 462
BsnI GGCC 1 cut(s) 920
Bso31I GGTCTC 1 cut(s) 1078
BsoBI CYCGRG 2 cut(s) 720, 1691
Bsp120I GGGCCC 1 cut(s) 918
Bsp1286I GDGCHC 2 cut(s) 294, 922
Bsp143I GATC 5 cut(s) 451, 859, 1112, 1443, 1651
BspACI CCGC 4 cut(s) 749, 814, 1211, 1712
BspANI GGCC 1 cut(s) 920
BspCNI CTCAG 2 cut(s) 1135, 1405
BspDI ATCGAT 2 cut(s) 24, 92
BspFNI CGCG 1 cut(s) 1855
BspHI TCATGA 2 cut(s) 495, 1612
BspLI GGNNCC 5 cut(s) 920, 949, 984, 1773, 1786
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 1771
BspTNI GGTCTC 1 cut(s) 1078
BsrI ACTGG 4 cut(s) 761, 1002, 1133, 1788
BssECI CCNNGG 2 cut(s) 922, 944
BssMI GATC 5 cut(s) 451, 859, 1112, 1443, 1651
BssT1I CCWWGG 1 cut(s) 922
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 357, 655, 979
Bst6I CTCTTC 6 cut(s) 249, 387, 506, 689, 1027, 1103
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 2 cut(s) 442, 828
BstC8I GCNNGC 2 cut(s) 485, 1857
BstDEI CTNAG 4 cut(s) 765, 1122, 1392, 1655
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 6 cut(s) 149, 181, 478, 592, 1495, 1573
BstFNI CGCG 1 cut(s) 1855
BstKTI GATC 5 cut(s) 454, 862, 1115, 1446, 1654
BstMAI GTCTC 3 cut(s) 629, 1078, 1295
BstMBI GATC 5 cut(s) 451, 859, 1112, 1443, 1651
BstMWI GCNNNNNNNGC 3 cut(s) 298, 1007, 1882
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 4 cut(s) 428, 1054, 1094, 1180
BstSCI CCNGG 1 cut(s) 943
BstSFI CTRYAG 1 cut(s) 1407
BstSLI GKGCMC 1 cut(s) 922
BstSNI TACGTA 2 cut(s) 442, 828
BstUI CGCG 1 cut(s) 1855
BstV1I GCAGC 2 cut(s) 1265, 1608
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 2 cut(s) 859, 1443
BstYI RGATCY 2 cut(s) 859, 1443
Bsu15I ATCGAT 2 cut(s) 24, 92
BsuRI GGCC 1 cut(s) 920
BsuTUI ATCGAT 2 cut(s) 24, 92
BtsCI GGATG 6 cut(s) 149, 181, 478, 592, 1495, 1573
BtsIMutI CAGTG 3 cut(s) 229, 353, 995
Cac8I GCNNGC 2 cut(s) 485, 1857
CciI TCATGA 2 cut(s) 495, 1612
Cfr13I GGNCC 4 cut(s) 918, 919, 948, 1220
ClaI ATCGAT 2 cut(s) 24, 92
CseI GACGC 1 cut(s) 1432
Csp6I GTAC 2 cut(s) 1126, 1851
CviQI GTAC 2 cut(s) 1126, 1851
DdeI CTNAG 4 cut(s) 765, 1122, 1392, 1655
DpnI GATC 5 cut(s) 453, 861, 1114, 1445, 1653
DpnII GATC 5 cut(s) 451, 859, 1112, 1443, 1651
Eam1104I CTCTTC 6 cut(s) 249, 387, 506, 689, 1027, 1103
EarI CTCTTC 6 cut(s) 249, 387, 506, 689, 1027, 1103
Eco105I TACGTA 2 cut(s) 442, 828
Eco130I CCWWGG 1 cut(s) 922
Eco24I GRGCYC 1 cut(s) 922
Eco31I GGTCTC 1 cut(s) 1078
Eco32I GATATC 1 cut(s) 1389
Eco47I GGWCC 2 cut(s) 948, 1220
Eco57I CTGAAG 2 cut(s) 104, 1769
Eco88I CYCGRG 2 cut(s) 720, 1691
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 918, 919
EcoRII CCWGG 1 cut(s) 943
EcoRV GATATC 1 cut(s) 1389
EcoT14I CCWWGG 1 cut(s) 922
EcoT22I ATGCAT 2 cut(s) 303, 1676
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 1 cut(s) 922
FaqI GGGAC 3 cut(s) 83, 343, 961
FauNDI CATATG 2 cut(s) 1333, 1708
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1635
Fnu4HI GCNGC 5 cut(s) 750, 815, 1254, 1597, 1877
FokI GGATG 6 cut(s) 156, 188, 485, 599, 1502, 1580
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 5 cut(s) 750, 815, 1254, 1597, 1877
FspBI CTAG 3 cut(s) 780, 1520, 1836
GluI GCNGC 5 cut(s) 750, 815, 1254, 1597, 1877
GsaI CCCAGC 3 cut(s) 572, 1085, 1665
GsuI CTGGAG 1 cut(s) 1771
HaeIII GGCC 1 cut(s) 920
HgaI GACGC 1 cut(s) 1432
HindIII AAGCTT 1 cut(s) 1373
HinfI GANTC 9 cut(s) 21, 26, 182, 350, 430, 637, 989, 1462, 1799
HphI GGTGA 5 cut(s) 175, 696, 736, 1200, 1396
Hpy166II GTNNAC 3 cut(s) 113, 311, 1636
Hpy188I TCNGA 8 cut(s) 565, 1078, 1395, 1422, 1450, 1461, 1467, 1585
Hpy188III TCNNGA 9 cut(s) 158, 245, 389, 496, 623, 1096, 1379, 1613, 1691
Hpy8I GTNNAC 3 cut(s) 113, 311, 1636
HpyAV CCTTC 8 cut(s) 160, 444, 618, 657, 881, 1044, 1522, 1744
HpyCH4III ACNGT 3 cut(s) 357, 655, 979
HpyCH4IV ACGT 3 cut(s) 441, 827, 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 1007, 1882
HpyF3I CTNAG 4 cut(s) 765, 1122, 1392, 1655
HpySE526I ACGT 3 cut(s) 441, 827, 1159
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 5 cut(s) 451, 859, 1112, 1443, 1651
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 5 cut(s) 133, 289, 666, 1536, 1790
Lsp1109I GCAGC 2 cut(s) 1265, 1608
MaeI CTAG 3 cut(s) 780, 1520, 1836
MaeII ACGT 3 cut(s) 441, 827, 1159
MaeIII GTNAC 3 cut(s) 335, 702, 1588
MalI GATC 5 cut(s) 453, 861, 1114, 1445, 1653
MboI GATC 5 cut(s) 451, 859, 1112, 1443, 1651
MflI RGATCY 2 cut(s) 859, 1443
MhlI GDGCHC 2 cut(s) 294, 922
MluCI AATT 9 cut(s) 119, 401, 416, 444, 546, 575, 711, 1291, 1756
MluI ACGCGT 1 cut(s) 1853
MlyI GAGTC 2 cut(s) 191, 631
MmeI TCCRAC 3 cut(s) 327, 1167, 1477
Mph1103I ATGCAT 2 cut(s) 303, 1676
MroXI GAANNNNTTC 2 cut(s) 25, 520
MseI TTAA 6 cut(s) 552, 714, 822, 1550, 1601, 1626
MslI CAYNNNNRTG 4 cut(s) 471, 1140, 1431, 1721
MspA1I CMGCKG 1 cut(s) 1738
MspR9I CCNGG 1 cut(s) 945
Mva1269I GAATGC 3 cut(s) 14, 233, 462
MvaI CCWGG 1 cut(s) 945
MvnI CGCG 1 cut(s) 1855
MwoI GCNNNNNNNGC 3 cut(s) 298, 1007, 1882
NdeI CATATG 2 cut(s) 1333, 1708
NdeII GATC 5 cut(s) 451, 859, 1112, 1443, 1651
NlaIV GGNNCC 5 cut(s) 920, 949, 984, 1773, 1786
NmuCI GTSAC 2 cut(s) 335, 702
NsiI ATGCAT 2 cut(s) 303, 1676
NspI RCATGY 4 cut(s) 428, 1054, 1094, 1180
PaeR7I CTCGAG 1 cut(s) 1691
PagI TCATGA 2 cut(s) 495, 1612
PciI ACATGT 3 cut(s) 1050, 1090, 1176
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 3 cut(s) 14, 233, 462
PdmI GAANNNNTTC 2 cut(s) 25, 520
PfeI GAWTC 7 cut(s) 21, 26, 350, 430, 989, 1462, 1799
Pfl23II CGTACG 1 cut(s) 1850
PflMI CCANNNNNTGG 2 cut(s) 322, 1781
PkrI GCNGC 5 cut(s) 751, 816, 1255, 1598, 1878
PleI GAGTC 2 cut(s) 190, 631
PpsI GAGTC 2 cut(s) 190, 631
Ppu21I YACGTR 2 cut(s) 442, 828
PscI ACATGT 3 cut(s) 1050, 1090, 1176
PshBI ATTAAT 1 cut(s) 714
PsiI TTATAA 1 cut(s) 1370
Psp6I CCWGG 1 cut(s) 943
PspFI CCCAGC 3 cut(s) 568, 1081, 1661
PspGI CCWGG 1 cut(s) 943
PspLI CGTACG 1 cut(s) 1850
PspN4I GGNNCC 5 cut(s) 920, 949, 984, 1773, 1786
PspOMI GGGCCC 1 cut(s) 918
PspPI GGNCC 4 cut(s) 918, 919, 948, 1220
PsuI RGATCY 2 cut(s) 859, 1443
PvuII CAGCTG 1 cut(s) 1738
RsaI GTAC 2 cut(s) 1127, 1852
RsaNI GTAC 2 cut(s) 1126, 1851
RseI CAYNNNNRTG 4 cut(s) 471, 1140, 1431, 1721
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 6 cut(s) 552, 714, 822, 1550, 1601, 1626
SatI GCNGC 5 cut(s) 750, 815, 1254, 1597, 1877
Sau3AI GATC 5 cut(s) 451, 859, 1112, 1443, 1651
Sau96I GGNCC 4 cut(s) 918, 919, 948, 1220
ScaI AGTACT 1 cut(s) 1127
SchI GAGTC 2 cut(s) 191, 631
ScrFI CCNGG 1 cut(s) 945
SduI GDGCHC 2 cut(s) 294, 922
SfcI CTRYAG 1 cut(s) 1407
Sfr274I CTCGAG 1 cut(s) 1691
SinI GGWCC 2 cut(s) 948, 1220
SlaI CTCGAG 1 cut(s) 1691
SmiMI CAYNNNNRTG 4 cut(s) 471, 1140, 1431, 1721
SmlI CTYRAG 3 cut(s) 158, 1379, 1691
SmoI CTYRAG 3 cut(s) 158, 1379, 1691
SnaBI TACGTA 2 cut(s) 442, 828
SpeI ACTAGT 1 cut(s) 1835
Sse9I AATT 9 cut(s) 119, 401, 416, 444, 546, 575, 711, 1291, 1756
SsiI CCGC 4 cut(s) 749, 814, 1211, 1712
SspMI CTAG 3 cut(s) 780, 1520, 1836
StyD4I CCNGG 1 cut(s) 943
StyI CCWWGG 1 cut(s) 922
TaaI ACNGT 3 cut(s) 357, 655, 979
TaiI ACGT 3 cut(s) 444, 830, 1162
TaqI TCGA 5 cut(s) 24, 29, 92, 842, 1692
TasI AATT 9 cut(s) 119, 401, 416, 444, 546, 575, 711, 1291, 1756
TatI WGTACW 1 cut(s) 1125
TauI GCSGC 2 cut(s) 752, 817
TfiI GAWTC 7 cut(s) 21, 26, 350, 430, 989, 1462, 1799
Tru1I TTAA 6 cut(s) 552, 714, 822, 1550, 1601, 1626
Tru9I TTAA 6 cut(s) 552, 714, 822, 1550, 1601, 1626
TscAI CASTG 3 cut(s) 229, 360, 1002
TseFI GTSAC 2 cut(s) 335, 702
TseI GCWGC 3 cut(s) 1253, 1596, 1876
Tsp45I GTSAC 2 cut(s) 335, 702
TspDTI ATGAA 9 cut(s) 378, 426, 455, 484, 512, 875, 1152, 1601, 1632
TspRI CASTG 3 cut(s) 229, 360, 1002
Van91I CCANNNNNTGG 2 cut(s) 322, 1781
VpaK11BI GGWCC 2 cut(s) 948, 1220
VspI ATTAAT 1 cut(s) 714
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 1291
XceI RCATGY 4 cut(s) 428, 1054, 1094, 1180
XhoI CTCGAG 1 cut(s) 1691
XmiI GTMKAC 1 cut(s) 1635
XmnI GAANNNNTTC 2 cut(s) 25, 520
XspI CTAG 3 cut(s) 780, 1520, 1836
ZrmI AGTACT 1 cut(s) 1127
Zsp2I ATGCAT 2 cut(s) 303, 1676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.