Rmu_sc0033390.1_g000001

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033390.1
OG0000126
Physical Location & Seq
Forward (+)
158 .. 1118
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033390.1_g000001.1.cds

Sequence Viewer

Length: 684 bp
atgcaagggtctcttacgtattactggagaaatagagatgttagttccaaagaaaaggttgtatctggtaacattactctattgaagattctaatgggactgtcaacacatgttggacctcatctgaaagaaaatgcaacaaatctagcatcccagtggaaagaaaagttgagaggtgatactgaaaattcattggagagtttggggtgtttgctgtttatagctatgtatgaattgcttggaaccttacatgaagatgagattgtaatgcttcttagaagggtttcgcagcataaacagtctctagagttatgtcagacgcatggttttgcagattatatccctgattttatacggaagcttattgaaaagaagccactgatggaggctgttagatctgtttgtgccttcaaattatttgacaagctcccccctgtgccactcttaaaagaatatgtggatgatgtaatgatgtgttctgaagtaatttgcgggtcacagatgatacctgatgaaaaggataaggctctgaatggtaaaatagctgatctaagagctgccattcaatgcatcaaaaattacgacctcgagtctgaatacccgtccaagactgttgaattgcaaatagttcagcttgaaatgctgaaggaaaaatggaggagtttggctagtacccaaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

227

Amino Acids

25.91

Weight (kDa)

6.24

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 492
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 501, 665
AfaI GTAC 1 cut(s) 673
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 6 cut(s) 85, 368, 412, 566, 617, 638
AhdI GACNNNNNGTC 1 cut(s) 589
AluBI AGCT 6 cut(s) 224, 361, 427, 545, 557, 634
AluI AGCT 6 cut(s) 224, 361, 427, 545, 557, 634
Alw26I GTCTC 2 cut(s) 15, 306
Ama87I CYCGRG 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 289, 557
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 301, 544
BccI CCATC 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 15, 306
BfaI CTAG 3 cut(s) 146, 305, 669
BglII AGATCT 1 cut(s) 395
BisI GCNGC 2 cut(s) 290, 558
BlsI GCNGC 2 cut(s) 291, 559
Bme18I GGWCC 1 cut(s) 116
BmeRI GACNNNNNGTC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 158, 579
BmuI ACTGGG 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 15
Bse1I ACTGG 2 cut(s) 29, 154
BseGI GGATG 2 cut(s) 149, 466
BseNI ACTGG 2 cut(s) 29, 154
BseRI GAGGAG 1 cut(s) 673
BseXI GCAGC 2 cut(s) 301, 544
BsiHKCI CYCGRG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 15, 306
BsmFI GGGAC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 587
Bsp143I GATC 2 cut(s) 395, 547
BspACI CCGC 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 29, 154
BssMI GATC 2 cut(s) 395, 547
Bst4CI ACNGT 3 cut(s) 102, 300, 613
BstBAI YACGTR 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 275, 551
BstF5I GGATG 2 cut(s) 149, 466
BstKTI GATC 2 cut(s) 398, 550
BstMAI GTCTC 2 cut(s) 15, 306
BstMBI GATC 2 cut(s) 395, 547
BstMWI GCNNNNNNNGC 1 cut(s) 640
BstNSI RCATGY 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 301, 544
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BtsCI GGATG 2 cut(s) 149, 466
BtsIMutI CAGTG 2 cut(s) 161, 377
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 672
CviAII CATG 3 cut(s) 110, 251, 323
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 2 cut(s) 275, 551
DpnI GATC 2 cut(s) 397, 549
DpnII GATC 2 cut(s) 395, 547
DriI GACNNNNNGTC 1 cut(s) 589
Eam1105I GACNNNNNGTC 1 cut(s) 589
Eco105I TACGTA 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 501, 665
Eco88I CYCGRG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 572
FaeI CATG 3 cut(s) 113, 254, 326
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 109, 250, 322
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 2 cut(s) 290, 558
FokI GGATG 2 cut(s) 136, 473
Fsp4HI GCNGC 2 cut(s) 290, 558
FspBI CTAG 3 cut(s) 146, 305, 669
GluI GCNGC 2 cut(s) 290, 558
GsuI CTGGAG 1 cut(s) 46
HgaI GACGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 113, 254, 326
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 2 cut(s) 88, 590
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 126, 318, 481, 531, 595
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 273, 418, 640
HpyCH4III ACNGT 3 cut(s) 102, 300, 613
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 5 cut(s) 4, 137, 332, 570, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 640
HpyF3I CTNAG 2 cut(s) 275, 551
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 3 cut(s) 113, 254, 326
Kzo9I GATC 2 cut(s) 395, 547
LmnI GCTCC 1 cut(s) 432
LpnPI CCDG 6 cut(s) 10, 51, 167, 357, 447, 522
Lsp1109I GCAGC 2 cut(s) 301, 544
LweI GCATC 2 cut(s) 158, 579
MaeI CTAG 3 cut(s) 146, 305, 669
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 68, 495
MalI GATC 2 cut(s) 397, 549
MboI GATC 2 cut(s) 395, 547
MboII GAAGA 2 cut(s) 97, 266
MflI RGATCY 1 cut(s) 395
MluCI AATT 6 cut(s) 187, 233, 413, 486, 577, 617
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 129, 167, 379, 596, 651
Mph1103I ATGCAT 1 cut(s) 572
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 2 cut(s) 154, 255
MwoI GCNNNNNNNGC 1 cut(s) 640
NdeII GATC 2 cut(s) 395, 547
NlaIII CATG 3 cut(s) 113, 254, 326
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 495
NsiI ATGCAT 1 cut(s) 572
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 587
PciI ACATGT 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 291, 559
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 18
PscI ACATGT 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 587
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
RseI CAYNNNNRTG 2 cut(s) 154, 255
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 290, 558
Sau3AI GATC 2 cut(s) 395, 547
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 599
SfaNI GCATC 2 cut(s) 158, 579
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 154, 255
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SnaBI TACGTA 1 cut(s) 18
Sse9I AATT 6 cut(s) 187, 233, 413, 486, 577, 617
SsiI CCGC 1 cut(s) 492
SspMI CTAG 3 cut(s) 146, 305, 669
TaaI ACNGT 3 cut(s) 102, 300, 613
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 588
TasI AATT 6 cut(s) 187, 233, 413, 486, 577, 617
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 2 cut(s) 161, 384
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 2 cut(s) 289, 557
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 4 cut(s) 180, 246, 267, 528
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 2 cut(s) 161, 384
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 3 cut(s) 146, 305, 669
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.