Rw3G003700

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000126
Physical Location & Seq
Forward (+)
3162604 .. 3169884
7281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003700.1

Sequence Viewer

Length: 2574 bp
ATGAGAGGGGTTGCTCTGGAGAGAAGAGGTGGCCAAGGTGTGTTATTATGTTTGGGTATGGGGTTAATCATGGATTTGGGAGTGGTTTTCAGAACCGAGCTGAGGGAAAATATGGAGAATGATCCAGACCCGGAAATGGAAGAGTTGGAGGCGAGGCAGAGGAGCTTAGGCAGAGCCTTCGACTCCTTGAATGTCCAAGCTTCTTCGGTCCTGTTGTTCACCGCGCAGTGGAAGGAGCTCGAGGACCATTTTGAGTCGTCCCGGAAGGAGCTCCGGACCCGGTTGGCGGAGCTGGAGGAGCGCGTGAAGCTAGTCGCGGAGGTGGAGGCGAGGGCGGTGAGGTTGAAGACGGAAATGGAGGCTAAAGCTAAGGACTTGGGGGAAATGGAGGAGGTGGTGGAGCAGAAGCGGCGAGAGGTTGAAGAAGGTAATAGTCAGTTGTGTTGTATTAACTTGTTGATTGAAGAAAACAGAGAAGAGCTTAGAGTTTGTGAGAGTCAGTGTTCGCATTTTGATAGATTGGTTAAAGAGAGGTCTAGGAAGTTGAATTGGGTTGAGAAAAGAGTAGAGGAGAAGTTGAATCAGGTTGAGGTGGAAGAGAGGAAGTTAGGTGAGATTAGGGGGTTGGTTGAGGAGAAAAGGAGAGAACTTGAAGAGTGTGAGGGTGTGTTGGAGTTGAAAGAGGAGAGGTTAAGGTTGGTGGAGAAATCGATTGTGAATTGCGATAAGATACTTGATTTGAAGGAGAAATTGGTTAGTGTAGTGGATTTGAAGGTGAAAGATTTCTGCTTGCTGGAGAAATCAATGGAGGAGTGGTCATGTAAGCTTGAAATGAAGGAGAGGGAGCTCGAAGGATGTGTTGCTAAGATAGAAGCAAAAGAGGGACAAGTTGATGGAAAGATTGAGGAGCTGAATTTGGTTCATAGCAAGTTCCTTGATGAGGTTCAGTTGAAGGAGAAACATCTCGGTTCGCTTGAAGAATCGGTACTAGAGCGCGAGAAGGATTTGCTTTTCTCAGTCCAGAAGTTAGTACAAGAGTGTTGCCAGGGAAGTGAGTTCACTAGGGATGGAAGAGGACTAGAGCAGTTCATGGATGAGCATTTGATGAGAATTGATTCCATGTGTGTCGAACTGTCAGCGATTCTTAAAGAGTCCTCAGACCCGGCGAAATTGGTTTTGGATGCAATGCAGGGGTTCTATCCGGACAACAGGGAGTTACATTTTGATTTGATGGTTAGGAGAAGAGGTTGTTGTCTTTTGTTAAAGGAGTTGAAGACAATCTCCCCACAAATTAGTCCTCAGGTGAGAGAGGAGGCAACAAAACTGGCTGCTAATTGGAAGGCCAAGATGACAGTGGCTAGAGACAATGACTTGGAGGTTCTGGGCTTCTTGAGGCTTGTTGCTGCTTATGATTTGGCTTCTATTTACGATGCCAAGGAGCTTAAAGGGCTTCTTTCTAGTGTTTCTAATGGTCAGCAAGCAGCTCATATAGGCCAGGCCCTTGGTTTTGCTGCACCTGCATCTCTTCAAAGTTCGCTAGAACCTGCAAAACTCGTGTTGGATTGGATGCAAACTGATTTATCACAATACTGGACAAAAGGTGATGTTTGGCTCGAAGCAACTTCAATCAAAACCTGCATTTTTGTATTACAGCAGCTAATGAGAGTCGTCCCCCATGTCGGACAACATGTGAAAGAGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAAATTGAGAGCTAATGCTGAAAATGCCTGGGAGATTTTGGGCTTTTTGCACTTTATAGCTGCATACGGGTTGATTTTTACTTTAAATGTTGATGACATTGTAACGCTTCTTGGGATGATTGCTCAGCATAAACAGGCTCTAGAATTCTGTTGGAAACTTCCTTCTGAAGATAAGATCCCTGGAGAGTTTATCCACTGTCTTGTTGAAAGGAAGCAGCTGATGGAGGCCATTGGATTGATTTGTACCTTCAAATTAATTAACAGTATTCCCCCAGTGCCACTCTTAAAAGAATACGTGAAGGAAAAGATGAAGTGTTGCAGAGATGGTTACACAAAAGAGAAATTACATGATGAAAAGGTTAAGGTTGTGGACCAGCACATAACTGATCTAAGAGCGGTCATTAACCTCATCAAAGACTACAACCTGGAATCGGAATATCCATCTTCGAATGTTGAAATGGAAATAACTCAACTGGAGAAAGTAAAGGAGAAATGGAGAATAGTTCAGTCAGGGAATGTGGATAAAGAGCAGAAAAGAGGAACCAAACGTCGTAGCAGCACTCCCCCCACTAAACTCGAACCACAACAGCAGCCCAATAAATCTCATCGGACAGCTGTAATATCTCCTAGACCTCATCCATTGCAACTTTACACCCCGGTGTATCTGCAGCCAAATGCTTCACCTTTGCTGTTACACTCCAGGCAGTTTGGCACCATTCAGAATGCTGGAATACTCTCAAGTCCTAGTTATGCTGGAATACTCCACCCAAGTCCTAGTTATCGTCCTAATCTACCCCCATGGAACCACCTCCCCAACTTTGGTAGTGCCTTCTTTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

857

Amino Acids

98.2

Weight (kDa)

5.77

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 356 - 504 3.5e-31 Frigida-like protein
Frigida PF07899 506 - 741 1.1e-47 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1525
Acc36I ACCTGC 3 cut(s) 1525, 1552, 1643
AccB1I GGYRCC 1 cut(s) 2441
AccBSI CCGCTC 1 cut(s) 2126
AccII CGCG 4 cut(s) 224, 303, 317, 996
AccIII TCCGGA 2 cut(s) 273, 1201
AciI CCGC 6 cut(s) 222, 287, 317, 335, 409, 2126
AclWI GGATC 2 cut(s) 116, 1900
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 2 cut(s) 913, 1874
AcuI CTGAAG 1 cut(s) 1917
AfaI GTAC 3 cut(s) 987, 1032, 1975
AfiI CCNNNNNNNGG 8 cut(s) 102, 136, 228, 286, 940, 1679, 2161, 2549
AflIII ACRYGT 1 cut(s) 1687
AjnI CCWGG 6 cut(s) 1044, 1494, 1757, 1909, 2154, 2429
AjuI GAANNNNNNNTTGG 4 cut(s) 734, 766, 1160, 1192
AleI CACNNNNGTG 1 cut(s) 2387
Alw21I GWGCWC 3 cut(s) 240, 273, 849
Alw26I GTCTC 1 cut(s) 1356
AlwI GGATC 2 cut(s) 116, 1900
Ama87I CYCGRG 1 cut(s) 239
Aor13HI TCCGGA 2 cut(s) 273, 1201
AoxI GGCC 5 cut(s) 31, 1341, 1492, 1497, 1956
ApoI RAATTY 2 cut(s) 913, 1874
AseI ATTAAT 1 cut(s) 1985
Asp700I GAANNNNTTC 2 cut(s) 782, 1114
AspLEI GCGC 3 cut(s) 226, 303, 996
AspS9I GGNCC 5 cut(s) 208, 244, 276, 1498, 2101
AsuC2I CCSGG 5 cut(s) 131, 262, 280, 1163, 2387
AsuHPI GGTGA 7 cut(s) 211, 349, 623, 787, 1315, 1613, 2403
AsuII TTCGAA 1 cut(s) 2177
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 4 cut(s) 208, 244, 276, 2101
AxyI CCTNAGG 1 cut(s) 1299
BalI TGGCCA 1 cut(s) 33
BanI GGYRCC 1 cut(s) 2441
BanII GRGCYC 3 cut(s) 240, 273, 849
BarI GAAGNNNNNNTAC 2 cut(s) 969, 1001
BauI CACGAG 1 cut(s) 1553
BbsI GAAGAC 2 cut(s) 353, 1280
Bbv12I GWGCWC 3 cut(s) 240, 273, 849
BbvCI CCTCAGC 1 cut(s) 101
BccI CCATC 6 cut(s) 887, 1061, 1225, 1945, 2048, 2179
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 6 cut(s) 1046, 1496, 1759, 1911, 2156, 2431
BcnI CCSGG 5 cut(s) 131, 262, 280, 1163, 2387
BcoDI GTCTC 1 cut(s) 1356
BfmI CTRYAG 1 cut(s) 2396
BfuAI ACCTGC 3 cut(s) 1525, 1552, 1643
BlpI GCTNAGC 1 cut(s) 1854
Bme18I GGWCC 4 cut(s) 208, 244, 276, 2101
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 5 cut(s) 208, 244, 276, 1498, 2101
BmiI GGNNCC 4 cut(s) 278, 2272, 2443, 2534
BmrI ACTGGG 1 cut(s) 1997
BmsI GCATC 5 cut(s) 1171, 1420, 1529, 1557, 1690
BmuI ACTGGG 1 cut(s) 1997
BpiI GAAGAC 2 cut(s) 353, 1280
BpmI CTGGAG 6 cut(s) 38, 314, 815, 1932, 2225, 2413
Bpu10I CCTNAGC 3 cut(s) 101, 166, 369
Bpu1102I GCTNAGC 1 cut(s) 1854
Bpu14I TTCGAA 1 cut(s) 2177
BpuEI CTTGAG 2 cut(s) 1411, 2452
BpuMI CCSGG 5 cut(s) 131, 262, 280, 1163, 2387
Bsa29I ATCGAT 1 cut(s) 710
BsaAI YACGTR 1 cut(s) 2026
BsaJI CCNNGG 8 cut(s) 34, 1045, 1434, 1501, 1758, 1909, 2385, 2528
BsaWI WCCGGW 2 cut(s) 273, 1201
BsaXI ACNNNNNCTCC 4 cut(s) 800, 830, 1231, 1261
Bsc4I CCNNNNNNNGG 8 cut(s) 102, 136, 228, 286, 940, 1679, 2161, 2549
Bse1I ACTGG 4 cut(s) 1329, 1595, 2003, 2208
Bse21I CCTNAGG 1 cut(s) 1299
Bse3DI GCAATG 3 cut(s) 1191, 1710, 2369
BseAI TCCGGA 2 cut(s) 273, 1201
BseBI CCWGG 6 cut(s) 1046, 1496, 1759, 1911, 2156, 2431
BseCI ATCGAT 1 cut(s) 710
BseDI CCNNGG 8 cut(s) 34, 1045, 1434, 1501, 1758, 1909, 2385, 2528
BseGI GGATG 8 cut(s) 860, 1072, 1099, 1186, 1572, 1705, 1851, 2365
BseLI CCNNNNNNNGG 8 cut(s) 102, 136, 228, 286, 940, 1679, 2161, 2549
BseMI GCAATG 3 cut(s) 1191, 1710, 2369
BseMII CTCAG 5 cut(s) 92, 1029, 1170, 1313, 1868
BseNI ACTGG 4 cut(s) 1329, 1595, 2003, 2208
BseRI GAGGAG 9 cut(s) 175, 311, 404, 584, 647, 698, 824, 920, 1325
BsgI GTGCAG 1 cut(s) 1497
Bsh1236I CGCG 4 cut(s) 224, 303, 317, 996
BshFI GGCC 5 cut(s) 33, 1343, 1494, 1499, 1958
BshNI GGYRCC 1 cut(s) 2441
BshVI ATCGAT 1 cut(s) 710
BsiHKAI GWGCWC 3 cut(s) 240, 273, 849
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 7 cut(s) 131, 262, 274, 280, 1163, 1202, 2387
BslFI GGGAC 3 cut(s) 244, 897, 1655
BslI CCNNNNNNNGG 8 cut(s) 102, 136, 228, 286, 940, 1679, 2161, 2549
BsmAI GTCTC 1 cut(s) 1356
BsmFI GGGAC 3 cut(s) 244, 897, 1655
BsmI GAATGC 1 cut(s) 2458
BsnI GGCC 5 cut(s) 33, 1343, 1494, 1499, 1958
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 2177
Bsp1286I GDGCHC 3 cut(s) 240, 273, 849
Bsp13I TCCGGA 2 cut(s) 273, 1201
Bsp143I GATC 3 cut(s) 121, 1905, 2116
Bsp1720I GCTNAGC 1 cut(s) 1854
Bsp19I CCATGG 1 cut(s) 2528
BspACI CCGC 6 cut(s) 222, 287, 317, 335, 409, 2126
BspANI GGCC 5 cut(s) 33, 1343, 1494, 1499, 1958
BspCNI CTCAG 5 cut(s) 93, 1028, 1169, 1312, 1867
BspDI ATCGAT 1 cut(s) 710
BspEI TCCGGA 2 cut(s) 273, 1201
BspFNI CGCG 4 cut(s) 224, 303, 317, 996
BspLI GGNNCC 4 cut(s) 278, 2272, 2443, 2534
BspMAI CTGCAG 1 cut(s) 2400
BspMI ACCTGC 3 cut(s) 1525, 1552, 1643
BspPI GGATC 2 cut(s) 116, 1900
BspQI GCTCTTC 1 cut(s) 471
BspT104I TTCGAA 1 cut(s) 2177
BspT107I GGYRCC 1 cut(s) 2441
BsrBI CCGCTC 1 cut(s) 2126
BsrDI GCAATG 3 cut(s) 1191, 1710, 2369
BsrI ACTGG 4 cut(s) 1329, 1595, 2003, 2208
BssECI CCNNGG 8 cut(s) 34, 1045, 1434, 1501, 1758, 1909, 2385, 2528
BssMI GATC 3 cut(s) 121, 1905, 2116
BssSI CACGAG 1 cut(s) 1553
BssT1I CCWWGG 4 cut(s) 34, 1434, 1501, 2528
Bst2BI CACGAG 1 cut(s) 1553
Bst2UI CCWGG 6 cut(s) 1046, 1496, 1759, 1911, 2156, 2431
Bst4CI ACNGT 4 cut(s) 1134, 1354, 1928, 1994
Bst6I CTCTTC 8 cut(s) 19, 135, 471, 591, 648, 1066, 1237, 1530
BstBAI YACGTR 1 cut(s) 2026
BstBI TTCGAA 1 cut(s) 2177
BstC8I GCNNGC 2 cut(s) 791, 1479
BstDSI CCRYGG 1 cut(s) 2528
BstENI CCTNNNNNAGG 1 cut(s) 938
BstF5I GGATG 8 cut(s) 860, 1072, 1099, 1186, 1572, 1705, 1851, 2365
BstFNI CGCG 4 cut(s) 224, 303, 317, 996
BstHHI GCGC 3 cut(s) 226, 303, 996
BstKTI GATC 3 cut(s) 124, 1908, 2119
BstMAI GTCTC 1 cut(s) 1356
BstMBI GATC 3 cut(s) 121, 1905, 2116
BstMWI GCNNNNNNNGC 6 cut(s) 298, 307, 409, 1447, 1517, 1754
BstNI CCWGG 6 cut(s) 1046, 1496, 1759, 1911, 2156, 2431
BstNSI RCATGY 1 cut(s) 1691
BstSFI CTRYAG 1 cut(s) 2396
BstUI CGCG 4 cut(s) 224, 303, 317, 996
BstV2I GAAGAC 2 cut(s) 353, 1280
BstX2I RGATCY 1 cut(s) 1905
BstXI CCANNNNNNTGG 1 cut(s) 1502
BstYI RGATCY 1 cut(s) 1905
Bsu15I ATCGAT 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 1299
BsuRI GGCC 5 cut(s) 33, 1343, 1494, 1499, 1958
BsuTUI ATCGAT 1 cut(s) 710
BtgI CCRYGG 1 cut(s) 2528
BtsCI GGATG 8 cut(s) 860, 1072, 1099, 1186, 1572, 1705, 1851, 2365
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 5 cut(s) 233, 506, 1359, 1924, 2010
BveI ACCTGC 3 cut(s) 1525, 1552, 1643
Cac8I GCNNGC 2 cut(s) 791, 1479
CfoI GCGC 3 cut(s) 226, 303, 996
Cfr13I GGNCC 5 cut(s) 208, 244, 276, 1498, 2101
ClaI ATCGAT 1 cut(s) 710
Csp6I GTAC 3 cut(s) 986, 1031, 1974
CviAII CATG 8 cut(s) 70, 819, 1090, 1120, 1676, 1688, 2078, 2529
CviQI GTAC 3 cut(s) 986, 1031, 1974
DpnI GATC 3 cut(s) 123, 1907, 2118
DpnII GATC 3 cut(s) 121, 1905, 2116
DraI TTTAAA 1 cut(s) 1815
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 8 cut(s) 19, 135, 471, 591, 648, 1066, 1237, 1530
EarI CTCTTC 8 cut(s) 19, 135, 471, 591, 648, 1066, 1237, 1530
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 3 cut(s) 238, 271, 847
Eco130I CCWWGG 4 cut(s) 34, 1434, 1501, 2528
Eco24I GRGCYC 3 cut(s) 240, 273, 849
Eco47I GGWCC 4 cut(s) 208, 244, 276, 2101
Eco53kI GAGCTC 3 cut(s) 238, 271, 847
Eco57I CTGAAG 1 cut(s) 1917
Eco81I CCTNAGG 1 cut(s) 1299
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 3 cut(s) 238, 271, 847
EcoNI CCTNNNNNAGG 1 cut(s) 938
EcoO109I RGGNCCY 1 cut(s) 1498
EcoRI GAATTC 1 cut(s) 1874
EcoRII CCWGG 6 cut(s) 1044, 1494, 1757, 1909, 2154, 2429
EcoT14I CCWWGG 4 cut(s) 34, 1434, 1501, 2528
EcoT38I GRGCYC 3 cut(s) 240, 273, 849
ErhI CCWWGG 4 cut(s) 34, 1434, 1501, 2528
FaeI CATG 8 cut(s) 73, 822, 1093, 1123, 1679, 1691, 2081, 2532
FalI AAGNNNNNCTT 2 cut(s) 1437, 1469
FaqI GGGAC 3 cut(s) 244, 897, 1655
FatI CATG 8 cut(s) 69, 818, 1089, 1119, 1675, 1687, 2077, 2528
FokI GGATG 8 cut(s) 867, 1079, 1106, 1193, 1579, 1712, 1858, 2352
FriOI GRGCYC 3 cut(s) 240, 273, 849
GlaI GCGC 3 cut(s) 225, 302, 995
GsuI CTGGAG 6 cut(s) 38, 314, 815, 1932, 2225, 2413
HaeIII GGCC 5 cut(s) 33, 1343, 1494, 1499, 1958
HapII CCGG 7 cut(s) 131, 262, 274, 280, 1163, 1202, 2387
HhaI GCGC 3 cut(s) 226, 303, 996
Hin1II CATG 8 cut(s) 73, 822, 1093, 1123, 1679, 1691, 2081, 2532
Hin6I GCGC 3 cut(s) 224, 301, 994
HinP1I GCGC 3 cut(s) 224, 301, 994
HindIII AAGCTT 2 cut(s) 198, 824
HpaII CCGG 7 cut(s) 131, 262, 274, 280, 1163, 1202, 2387
HphI GGTGA 7 cut(s) 211, 349, 623, 787, 1315, 1613, 2403
Hpy166II GTNNAC 3 cut(s) 219, 1059, 2101
Hpy188I TCNGA 8 cut(s) 92, 1159, 1682, 1897, 2164, 2340, 2451, 2573
Hpy188III TCNNGA 7 cut(s) 17, 125, 274, 1021, 1202, 1390, 1871
Hpy8I GTNNAC 3 cut(s) 219, 1059, 2101
Hpy99I CGWCG 1 cut(s) 2283
HpyCH4III ACNGT 4 cut(s) 1134, 1354, 1928, 1994
HpyCH4IV ACGT 2 cut(s) 2025, 2278
HpyF10VI GCNNNNNNNGC 6 cut(s) 298, 307, 409, 1447, 1517, 1754
HpySE526I ACGT 2 cut(s) 2025, 2278
Hsp92II CATG 8 cut(s) 73, 822, 1093, 1123, 1679, 1691, 2081, 2532
HspAI GCGC 3 cut(s) 224, 301, 994
Kpn2I TCCGGA 2 cut(s) 273, 1201
Kzo9I GATC 3 cut(s) 121, 1905, 2116
LguI GCTCTTC 1 cut(s) 471
LweI GCATC 5 cut(s) 1171, 1420, 1529, 1557, 1690
MaeII ACGT 2 cut(s) 2025, 2278
MaeIII GTNAC 4 cut(s) 1215, 1831, 2057, 2421
MalI GATC 3 cut(s) 123, 1907, 2118
MbiI CCGCTC 1 cut(s) 2126
MboI GATC 3 cut(s) 121, 1905, 2116
MflI RGATCY 1 cut(s) 1905
MhlI GDGCHC 3 cut(s) 240, 273, 849
MlsI TGGCCA 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 5 cut(s) 176, 263, 505, 1160, 1674
MmeI TCCRAC 5 cut(s) 126, 651, 1539, 1660, 1862
Mox20I TGGCCA 1 cut(s) 33
MroI TCCGGA 2 cut(s) 273, 1201
MroXI GAANNNNTTC 2 cut(s) 782, 1114
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 2387
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 2 cut(s) 1948, 2345
MspI CCGG 7 cut(s) 131, 262, 274, 280, 1163, 1202, 2387
Mva1269I GAATGC 1 cut(s) 2458
MvaI CCWGG 6 cut(s) 1046, 1496, 1759, 1911, 2156, 2431
MvnI CGCG 4 cut(s) 224, 303, 317, 996
MwoI GCNNNNNNNGC 6 cut(s) 298, 307, 409, 1447, 1517, 1754
NciI CCSGG 5 cut(s) 131, 262, 280, 1163, 2387
NcoI CCATGG 1 cut(s) 2528
NdeII GATC 3 cut(s) 121, 1905, 2116
NlaIII CATG 8 cut(s) 73, 822, 1093, 1123, 1679, 1691, 2081, 2532
NlaIV GGNNCC 4 cut(s) 278, 2272, 2443, 2534
NspI RCATGY 1 cut(s) 1691
NspV TTCGAA 1 cut(s) 2177
OliI CACNNNNGTG 1 cut(s) 2387
PacI TTAATTAA 1 cut(s) 1989
PaeR7I CTCGAG 1 cut(s) 239
PaqCI CACCTGC 1 cut(s) 1525
PciI ACATGT 1 cut(s) 1687
PciSI GCTCTTC 1 cut(s) 471
PctI GAATGC 1 cut(s) 2458
PdmI GAANNNNTTC 2 cut(s) 782, 1114
PfeI GAWTC 5 cut(s) 580, 980, 1115, 1141, 2159
PfoI TCCNGGA 1 cut(s) 260
PleI GAGTC 5 cut(s) 176, 262, 504, 1159, 1673
PpsI GAGTC 5 cut(s) 176, 262, 504, 1159, 1673
Ppu21I YACGTR 1 cut(s) 2026
PscI ACATGT 1 cut(s) 1687
PshBI ATTAAT 1 cut(s) 1985
Psp124BI GAGCTC 3 cut(s) 240, 273, 849
Psp6I CCWGG 6 cut(s) 1044, 1494, 1757, 1909, 2154, 2429
PspGI CCWGG 6 cut(s) 1044, 1494, 1757, 1909, 2154, 2429
PspN4I GGNNCC 4 cut(s) 278, 2272, 2443, 2534
PspPI GGNCC 5 cut(s) 208, 244, 276, 1498, 2101
PspXI VCTCGAGB 1 cut(s) 239
PstI CTGCAG 1 cut(s) 2400
PsuI RGATCY 1 cut(s) 1905
PvuII CAGCTG 2 cut(s) 1948, 2345
RsaI GTAC 3 cut(s) 987, 1032, 1975
RsaNI GTAC 3 cut(s) 986, 1031, 1974
RseI CAYNNNNRTG 1 cut(s) 2387
SacI GAGCTC 3 cut(s) 240, 273, 849
SapI GCTCTTC 1 cut(s) 471
Sau3AI GATC 3 cut(s) 121, 1905, 2116
Sau96I GGNCC 5 cut(s) 208, 244, 276, 1498, 2101
SchI GAGTC 5 cut(s) 176, 263, 505, 1160, 1674
SduI GDGCHC 3 cut(s) 240, 273, 849
SfaNI GCATC 5 cut(s) 1171, 1420, 1529, 1557, 1690
SfcI CTRYAG 1 cut(s) 2396
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 2177
SinI GGWCC 4 cut(s) 208, 244, 276, 2101
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 2387
SmlI CTYRAG 3 cut(s) 239, 1390, 2467
SmoI CTYRAG 3 cut(s) 239, 1390, 2467
SsiI CCGC 6 cut(s) 222, 287, 317, 335, 409, 2126
SstI GAGCTC 3 cut(s) 240, 273, 849
StyI CCWWGG 4 cut(s) 34, 1434, 1501, 2528
TaaI ACNGT 4 cut(s) 1134, 1354, 1928, 1994
TaiI ACGT 2 cut(s) 2028, 2281
TaqI TCGA 8 cut(s) 180, 240, 710, 849, 1128, 1614, 2177, 2307
TaqII GACCGA 1 cut(s) 196
TatI WGTACW 1 cut(s) 1030
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 5 cut(s) 580, 980, 1115, 1141, 2159
TscAI CASTG 5 cut(s) 233, 506, 1359, 1931, 2010
TspDTI ATGAA 6 cut(s) 848, 911, 1078, 1721, 2054, 2097
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 5 cut(s) 233, 506, 1359, 1931, 2010
VpaK11BI GGWCC 4 cut(s) 208, 244, 276, 2101
VspI ATTAAT 1 cut(s) 1985
XagI CCTNNNNNAGG 1 cut(s) 938
XapI RAATTY 2 cut(s) 913, 1874
XbaI TCTAGA 1 cut(s) 1870
XceI RCATGY 1 cut(s) 1691
XcmI CCANNNNNNNNNTGG 1 cut(s) 1351
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 782, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.