Prupe.7G018200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000126
Physical Location & Seq
Reverse (-)
2643407 .. 2649154
5748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G018200.1

Sequence Viewer

Length: 693 bp
ATGGACAAGTTTTCCCCGGTACCACTCTTAAAAGAATACGTGGACGATATACAGAAGCATTCCTGGAAAAAGTACATGAAAAGGAAATCACTTGATGAAAAGGATAACATTGCAGACAATCAAATAGTTGATGTATTAGATGTGATTCAATGTATCAAAGACTACAACCTCGAGTCTGAACACCCATCCAGGGACATTGAAGTAGAAATAACTAAGCTGCAAAAACTAAAGGAGAACTACAAACGTTGTCATGCCCCCAAGGTTGAACAACAGCAGAAAAAAGGGAAGAAACGTAGTTTTGACGCTTTTGCTCCCAAGTTTCAACCACAACATCCTAAAGGTAAATGTAAGCTGACAACAGTAGCAGCTGCTACACCATATGCATTGCCAACTCCCACCTTTGGATATCCTCAGCCAAGTTCATCCTCTTTGCCGTATGAAAACAATGGACGCCCTGGGCAATTCGGCATGGGTGCCAGCTACAGAGACATTTCCAAAGGAAATTGTTTCCATTGCGGCGAGTTAGGACATTGGAGCTGCAACTGTCAGAAATACTCATCGGGGAAAAAGAAATTAGATATGACAAAATCATCTGCGTCAAGTCCCTTGTGGATAAAGGGGTTCAAGGAAAGAAAGAAGCTACGTGATGGAAGATTTACTTCGCTCTGTAGCTCAGGCGGTGGGAATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

231

Amino Acids

26.05

Weight (kDa)

9.45

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 2 cut(s) 19, 473
AciI CCGC 2 cut(s) 516, 678
AclI AACGTT 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 451
AfaI GTAC 2 cut(s) 21, 74
AfiI CCNNNNNNNGG 2 cut(s) 190, 401
AgsI TTSAA 5 cut(s) 149, 200, 266, 323, 625
AjnI CCWGG 3 cut(s) 62, 188, 454
AluBI AGCT 7 cut(s) 217, 352, 368, 480, 537, 640, 672
AluI AGCT 7 cut(s) 217, 352, 368, 480, 537, 640, 672
Alw26I GTCTC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 217, 365, 368, 537
Asp718I GGTACC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 170
BanI GGYRCC 2 cut(s) 19, 473
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 4 cut(s) 204, 355, 377, 524
BccI CCATC 2 cut(s) 193, 641
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 3 cut(s) 64, 190, 456
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 480
BfmI CTRYAG 2 cut(s) 481, 667
BisI GCNGC 5 cut(s) 218, 366, 369, 517, 538
BlsI GCNGC 5 cut(s) 219, 367, 370, 518, 539
Bme1390I CCNGG 4 cut(s) 17, 64, 190, 456
BmeT110I CYCGRG 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 21, 475
BmrFI CCNGG 4 cut(s) 17, 64, 190, 456
Bpu10I CCTNAGC 2 cut(s) 411, 673
BpuMI CCSGG 1 cut(s) 17
BsaAI YACGTR 2 cut(s) 40, 644
BsaHI GRCGYC 1 cut(s) 451
BsaJI CCNNGG 5 cut(s) 15, 189, 258, 454, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 401
Bse3DI GCAATG 3 cut(s) 108, 383, 511
BseBI CCWGG 3 cut(s) 64, 190, 456
BseDI CCNNGG 5 cut(s) 15, 189, 258, 454, 455
BseGI GGATG 3 cut(s) 185, 331, 422
BseLI CCNNNNNNNGG 2 cut(s) 190, 401
BseMI GCAATG 3 cut(s) 108, 383, 511
BseMII CTCAG 2 cut(s) 425, 687
BseXI GCAGC 4 cut(s) 204, 355, 377, 524
BshNI GGYRCC 2 cut(s) 19, 473
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 2 cut(s) 206, 588
BslI CCNNNNNNNGG 2 cut(s) 190, 401
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 2 cut(s) 206, 588
BsmI GAATGC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 170
BspACI CCGC 2 cut(s) 516, 678
BspCNI CTCAG 2 cut(s) 424, 686
BspLI GGNNCC 2 cut(s) 21, 475
BspT107I GGYRCC 2 cut(s) 19, 473
BsrDI GCAATG 3 cut(s) 108, 383, 511
BssECI CCNNGG 5 cut(s) 15, 189, 258, 454, 455
BssNI GRCGYC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 64, 190, 456
Bst4CI ACNGT 2 cut(s) 361, 545
BstACI GRCGYC 1 cut(s) 451
BstBAI YACGTR 2 cut(s) 40, 644
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 213, 411, 673
BstF5I GGATG 3 cut(s) 185, 331, 422
BstMAI GTCTC 1 cut(s) 480
BstNI CCWGG 3 cut(s) 64, 190, 456
BstSCI CCNGG 4 cut(s) 15, 62, 188, 454
BstSFI CTRYAG 2 cut(s) 481, 667
BstV1I GCAGC 4 cut(s) 204, 355, 377, 524
BtsCI GGATG 3 cut(s) 185, 331, 422
Cac8I GCNNGC 1 cut(s) 478
CseI GACGC 3 cut(s) 311, 459, 585
Csp6I GTAC 2 cut(s) 20, 73
CviAII CATG 3 cut(s) 76, 251, 469
CviJI RGCY 8 cut(s) 217, 352, 368, 415, 480, 537, 640, 672
CviKI_1 RGCY 8 cut(s) 217, 352, 368, 415, 480, 537, 640, 672
CviQI GTAC 2 cut(s) 20, 73
DdeI CTNAG 3 cut(s) 213, 411, 673
Eco130I CCWWGG 1 cut(s) 258
Eco32I GATATC 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 62, 188, 454
EcoRV GATATC 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 79, 254, 472
FaiI YATR 8 cut(s) 50, 77, 252, 379, 381, 438, 470, 581
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 2 cut(s) 206, 588
FatI CATG 3 cut(s) 75, 250, 468
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 5 cut(s) 218, 366, 369, 517, 538
FokI GGATG 3 cut(s) 172, 318, 409
Fsp4HI GCNGC 5 cut(s) 218, 366, 369, 517, 538
GluI GCNGC 5 cut(s) 218, 366, 369, 517, 538
HapII CCGG 1 cut(s) 17
HgaI GACGC 3 cut(s) 311, 459, 585
Hin1I GRCGYC 1 cut(s) 451
Hin1II CATG 3 cut(s) 79, 254, 472
HinfI GANTC 2 cut(s) 145, 173
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 178, 549
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 361, 545
HpyCH4IV ACGT 4 cut(s) 39, 244, 292, 643
HpyCH4V TGCA 4 cut(s) 113, 220, 383, 540
HpyF3I CTNAG 3 cut(s) 213, 411, 673
HpySE526I ACGT 4 cut(s) 39, 244, 292, 643
Hsp92I GRCGYC 1 cut(s) 451
Hsp92II CATG 3 cut(s) 79, 254, 472
KpnI GGTACC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 316, 534
LpnPI CCDG 9 cut(s) 30, 49, 76, 175, 202, 441, 468, 490, 660
Lsp1109I GCAGC 4 cut(s) 204, 355, 377, 524
MaeII ACGT 4 cut(s) 39, 244, 292, 643
MboII GAAGA 2 cut(s) 298, 663
MluCI AATT 3 cut(s) 461, 502, 572
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 3 cut(s) 179, 420, 436
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 2 cut(s) 29, 691
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 4 cut(s) 17, 64, 190, 456
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 3 cut(s) 64, 190, 456
NciI CCSGG 1 cut(s) 17
NdeI CATATG 1 cut(s) 379
NlaIII CATG 3 cut(s) 79, 254, 472
NlaIV GGNNCC 2 cut(s) 21, 475
NsiI ATGCAT 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 170
PasI CCCWGGG 1 cut(s) 455
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 5 cut(s) 219, 367, 370, 518, 539
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 2 cut(s) 40, 644
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 62, 188, 454
PspGI CCWGG 3 cut(s) 62, 188, 454
PspN4I GGNNCC 2 cut(s) 21, 475
PspXI VCTCGAGB 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 2 cut(s) 21, 74
RsaNI GTAC 2 cut(s) 20, 73
SaqAI TTAA 2 cut(s) 29, 691
SatI GCNGC 5 cut(s) 218, 366, 369, 517, 538
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 4 cut(s) 17, 64, 190, 456
SfcI CTRYAG 2 cut(s) 481, 667
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 3 cut(s) 461, 502, 572
SsiI CCGC 2 cut(s) 516, 678
StyD4I CCNGG 4 cut(s) 15, 62, 188, 454
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 361, 545
TaiI ACGT 4 cut(s) 42, 247, 295, 646
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 461, 502, 572
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 519
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 29, 691
Tru9I TTAA 2 cut(s) 29, 691
TseI GCWGC 4 cut(s) 217, 365, 368, 537
TspDTI ATGAA 4 cut(s) 92, 111, 411, 453
XhoI CTCGAG 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.