Rh3DG049300

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000126
Physical Location & Seq
Forward (+)
3315951 .. 3321717
5767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG049300.1

Sequence Viewer

Length: 2463 bp
ATGGAGAATGATCCAGACCCGGAAATGGAAGAGTTGGAGGCGAGGCAGAGGAGCCTAGGCAGAGCCTTCGACTCCTTGAATGTCCAAGCTTCTTCGGTCCTGCTGTTCACCGCGCAGTGGAAGGAGCTCGAGGACCATTTTGAGTCGTCCCGGAAGGAGCTCCGGACCCGGTTGGCGGAGCTGGAGGAGCGCGTGAAGCTAGTCGCGGAGGTGGAGGCGAGGGCGGTGAGGTTGAAGACGGAAATGGAGGCTAAAGCTAAGGACTTGGGGGAAATGGAGGAGGTGGTGGAGCAGAAGCGGCGAGAGGTTGAAGAAGGTAATAGTCAGTTGTGTTGTATTAACTTGTTGATTGAAGAAAACAGAGAAGAGCTTAGAGTTTGTGAGAGTCAGTGTTCTCATTTTGATAGATTGGTTAAAGAGAGGTCTAGGAAGTTGAATTGGGTTGAGAAAAGAGTAGAGGAGAAGTTGAATCGGGTTGAGGTGGAAGAGAGGAAGTTAGATGAGATTAGGGGGTTGATTGAGGAGAAAAGGAGAGAACTTGAAGAGTGTGAGGGTGAGTTGGAGTTGAAAGAGGAGAGATTAAGGTTGGTGGAGAAATCGATTGTGAATTGCGATAAGATACTTGATTTGAAGGAGAAATTGGTTAGTGTAGTGGATTTGAAGGTGAAAGATTTCTGCTTGCTGGAGAAATCGATGGAGGAGTGGTCATGTAAGCTTGAAATGAAGGAGAGGGAGCTCGAAGGATGTGTTGCTAAGATAGAAGCAAAAGAGGGACAAGTTGATGGAAAGATTGAGGAGCTGAATTTGGTTCATAACAAGTTCCTTGATGAGGTTCAGTTGAAGGTGAAACATCTCGGTTCACTTGAAGAATCGGTACTAGAGCGCGAGAAGGATTTGCTTTTTTCAGTCCAGAAGTTGGTACAAGAATGTTGCCAGGGAAGTGAGTTCACTAGGGATGGAAGAGGACTAGAGCAGTTCATGGATGAGCATTTGATGAGAATTGATTCCATGTGTATCGAACTGTCAGCGATTCTTAAAGAGTCCTCAGACCCGGCGAAATTGGTTTTGGATGCAATGCAGGGGTTTTATCCGGACAACAGGGAGTTACATTTTGATTTGAGAGTTAGAAGAAGAGGTTGCTGTCTTTTGTTAAAGGAGTTGAAGACAATCTTCCCACAAATTAGTGCTCAGGTGAGAGAGGAGGCAACAAAACTGGCTGCTAATTGGAAGGCCAAGATCACAGTGGCTGGTGACAATGACTTGGAGGTTCTGGGCTTCTTGAGGCTTGTTGCTGCTTATGATTTGGCTTCTATTTACGATGCCAAGGAGCTTAAAGGGCTTCTTTCTAGTGTTTCTAATGGTCAGCAAGCAGCTCATATAGGCCAGGCCCTTGGTTTTGCTGCACCTGCATCTCTTCAAAGTTCGCTAGAACCTGCAAAACTCGTGTTGGATTGGATGCAAACTGATTTATCACAATACTGGACAAAAGGTGATGTTCGGCTCGAAGCAACTTCAATCAAAACCTGCATTTTTGTATTACAGCAGCTGATGAGAGTCGTCCCCCATGTCGGACAACATGTGAAAGAGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAAATTGAGAGCTAATGCTGAAAATGCCTGGGAGATTTTGGGCTTTTTGCACTTTATAGCTGCATACGGGTTGATTTTTACTTTAAATGTTGATGAGATTGTAACGCTTCTTGGGATGACCGCTCAGCATAAACAGGCTCTAGAATTCTGTTGGAAACTTCCTTCTGAAGATAAGATCCCTGGAGAGTTTATCCACTGTCTTGTTGAAAGGAAGCAGCTGATGGAGGCCATTGGATTGATTTGTACCTTCAAATTAATTAACAGTATTCCCCCAGTACCACTCTTAAAAGAATACGTGAAGGAAAAGATGAAGTGTTGCAGAGATGGTTACACAAAAGAGAAATTACATGATGAAAAGGTTAAGGTTGTGGACCAGCACATAACTGATCTAAGAGCGGTCATTAACCTCATCAAAGACTACAGCCTGGAATCGGAATATCCATCTTCGAATGTTGAAATGGAAATAACTCAACTGGAGAAAGTAAAGGAGAAATGGAGAATAGTTCAGTCAGGGAATGTGGATAAAGAGCAGAAAAGAGGAACCAAACGTCGTAGCAGCACTCCCCCCACTAAACTCGAACCACAACAGCAGCCCAATAAATCTCATCGGACAGCTGTAATATCTCCTAGGCCTCATCCATTGCAACTTTACACCCCGGTGTATCTGCAGCCAAATGCTTCACCTTTGCTGTTACACTCCAGGCAGTTTGGCACCATTCAGAATGCTGGAATACTCCCAAGTCCTAGTTATGCTGGAATACTCCACCCAAGTCCTAGTTATCGTCCTAATCTACCCCCATGGAACCACCTCCCCAACTTTGGTAGTGCCTTCTTTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

820

Amino Acids

94.19

Weight (kDa)

5.77

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 319 - 467 1.3e-31 Frigida-like protein
Frigida PF07899 469 - 704 2.1e-47 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1414
Acc36I ACCTGC 3 cut(s) 1414, 1441, 1532
AccB1I GGYRCC 1 cut(s) 2330
AccB7I CCANNNNNTGG 1 cut(s) 916
AccBSI CCGCTC 2 cut(s) 1742, 2015
AccII CGCG 4 cut(s) 113, 192, 206, 885
AccIII TCCGGA 2 cut(s) 162, 1090
AciI CCGC 7 cut(s) 111, 176, 206, 224, 298, 1740, 2015
AclWI GGATC 2 cut(s) 5, 1789
AcsI RAATTY 2 cut(s) 802, 1763
AcuI CTGAAG 1 cut(s) 1806
AfaI GTAC 4 cut(s) 876, 921, 1864, 1896
AfiI CCNNNNNNNGG 8 cut(s) 25, 117, 175, 829, 916, 1568, 2050, 2438
AflIII ACRYGT 1 cut(s) 1576
AjnI CCWGG 6 cut(s) 933, 1383, 1646, 1798, 2043, 2318
AjuI GAANNNNNNNTTGG 4 cut(s) 623, 655, 1049, 1081
AleI CACNNNNGTG 1 cut(s) 2276
Alw21I GWGCWC 4 cut(s) 129, 162, 738, 1189
AlwI GGATC 2 cut(s) 5, 1789
AlwNI CAGNNNCTG 2 cut(s) 1247, 1546
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 2 cut(s) 162, 1090
AoxI GGCC 5 cut(s) 1230, 1381, 1386, 1845, 2249
ApoI RAATTY 2 cut(s) 802, 1763
AseI ATTAAT 1 cut(s) 1874
Asp700I GAANNNNTTC 2 cut(s) 671, 1003
AspA2I CCTAGG 2 cut(s) 55, 2246
AspLEI GCGC 3 cut(s) 115, 192, 885
AspS9I GGNCC 5 cut(s) 97, 133, 165, 1387, 1990
AsuC2I CCSGG 5 cut(s) 20, 151, 169, 1052, 2276
AsuHPI GGTGA 9 cut(s) 100, 238, 566, 676, 856, 1204, 1262, 1502, 2292
AsuII TTCGAA 1 cut(s) 2066
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 4 cut(s) 97, 133, 165, 1990
AvrII CCTAGG 2 cut(s) 55, 2246
BanI GGYRCC 1 cut(s) 2330
BanII GRGCYC 3 cut(s) 129, 162, 738
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BauI CACGAG 1 cut(s) 1442
BbsI GAAGAC 2 cut(s) 242, 1169
Bbv12I GWGCWC 4 cut(s) 129, 162, 738, 1189
BccI CCATC 6 cut(s) 688, 776, 950, 1834, 1937, 2068
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 6 cut(s) 935, 1385, 1648, 1800, 2045, 2320
BcnI CCSGG 5 cut(s) 20, 151, 169, 1052, 2276
BfmI CTRYAG 2 cut(s) 2038, 2285
BfuAI ACCTGC 3 cut(s) 1414, 1441, 1532
BlnI CCTAGG 2 cut(s) 55, 2246
BlpI GCTNAGC 1 cut(s) 1743
Bme18I GGWCC 4 cut(s) 97, 133, 165, 1990
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 5 cut(s) 97, 133, 165, 1387, 1990
BmiI GGNNCC 5 cut(s) 53, 167, 2161, 2332, 2423
BmrI ACTGGG 1 cut(s) 1886
BmsI GCATC 5 cut(s) 1060, 1309, 1418, 1446, 1579
BmuI ACTGGG 1 cut(s) 1886
BpiI GAAGAC 2 cut(s) 242, 1169
BpmI CTGGAG 5 cut(s) 203, 704, 1821, 2114, 2302
Bpu10I CCTNAGC 2 cut(s) 258, 1188
Bpu1102I GCTNAGC 1 cut(s) 1743
Bpu14I TTCGAA 1 cut(s) 2066
BpuEI CTTGAG 1 cut(s) 1300
BpuMI CCSGG 5 cut(s) 20, 151, 169, 1052, 2276
Bsa29I ATCGAT 2 cut(s) 599, 692
BsaAI YACGTR 1 cut(s) 1915
BsaJI CCNNGG 9 cut(s) 55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2417
BsaWI WCCGGW 2 cut(s) 162, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 117, 175, 829, 916, 1568, 2050, 2438
Bse1I ACTGG 4 cut(s) 1218, 1484, 1892, 2097
Bse3DI GCAATG 3 cut(s) 1080, 1599, 2258
BseAI TCCGGA 2 cut(s) 162, 1090
BseBI CCWGG 6 cut(s) 935, 1385, 1648, 1800, 2045, 2320
BseCI ATCGAT 2 cut(s) 599, 692
BseDI CCNNGG 9 cut(s) 55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2417
BseGI GGATG 8 cut(s) 749, 961, 988, 1075, 1461, 1594, 1740, 2254
BseLI CCNNNNNNNGG 8 cut(s) 25, 117, 175, 829, 916, 1568, 2050, 2438
BseMI GCAATG 3 cut(s) 1080, 1599, 2258
BseMII CTCAG 3 cut(s) 1059, 1202, 1757
BseNI ACTGG 4 cut(s) 1218, 1484, 1892, 2097
BseRI GAGGAG 9 cut(s) 64, 200, 293, 473, 536, 587, 713, 809, 1214
BsgI GTGCAG 1 cut(s) 1386
Bsh1236I CGCG 4 cut(s) 113, 192, 206, 885
BshFI GGCC 5 cut(s) 1232, 1383, 1388, 1847, 2251
BshNI GGYRCC 1 cut(s) 2330
BshVI ATCGAT 2 cut(s) 599, 692
BsiHKAI GWGCWC 4 cut(s) 129, 162, 738, 1189
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 7 cut(s) 20, 151, 163, 169, 1052, 1091, 2276
BslFI GGGAC 3 cut(s) 133, 786, 1544
BslI CCNNNNNNNGG 8 cut(s) 25, 117, 175, 829, 916, 1568, 2050, 2438
BsmFI GGGAC 3 cut(s) 133, 786, 1544
BsmI GAATGC 1 cut(s) 2347
BsnI GGCC 5 cut(s) 1232, 1383, 1388, 1847, 2251
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 2066
Bsp1286I GDGCHC 4 cut(s) 129, 162, 738, 1189
Bsp13I TCCGGA 2 cut(s) 162, 1090
Bsp143I GATC 4 cut(s) 10, 1236, 1794, 2005
Bsp1720I GCTNAGC 1 cut(s) 1743
Bsp19I CCATGG 1 cut(s) 2417
BspACI CCGC 7 cut(s) 111, 176, 206, 224, 298, 1740, 2015
BspANI GGCC 5 cut(s) 1232, 1383, 1388, 1847, 2251
BspCNI CTCAG 3 cut(s) 1058, 1201, 1756
BspDI ATCGAT 2 cut(s) 599, 692
BspEI TCCGGA 2 cut(s) 162, 1090
BspFNI CGCG 4 cut(s) 113, 192, 206, 885
BspLI GGNNCC 5 cut(s) 53, 167, 2161, 2332, 2423
BspMAI CTGCAG 1 cut(s) 2289
BspMI ACCTGC 3 cut(s) 1414, 1441, 1532
BspPI GGATC 2 cut(s) 5, 1789
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 2066
BspT107I GGYRCC 1 cut(s) 2330
BsrBI CCGCTC 2 cut(s) 1742, 2015
BsrDI GCAATG 3 cut(s) 1080, 1599, 2258
BsrI ACTGG 4 cut(s) 1218, 1484, 1892, 2097
BssECI CCNNGG 9 cut(s) 55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2417
BssMI GATC 4 cut(s) 10, 1236, 1794, 2005
BssSI CACGAG 1 cut(s) 1442
BssT1I CCWWGG 5 cut(s) 55, 1323, 1390, 2246, 2417
Bst2BI CACGAG 1 cut(s) 1442
Bst2UI CCWGG 6 cut(s) 935, 1385, 1648, 1800, 2045, 2320
Bst4CI ACNGT 4 cut(s) 1023, 1243, 1817, 1883
Bst6I CTCTTC 7 cut(s) 24, 360, 480, 537, 955, 1126, 1419
BstBAI YACGTR 1 cut(s) 1915
BstBI TTCGAA 1 cut(s) 2066
BstC8I GCNNGC 2 cut(s) 680, 1368
BstDEI CTNAG 7 cut(s) 258, 371, 753, 1045, 1188, 1743, 2009
BstDSI CCRYGG 1 cut(s) 2417
BstENI CCTNNNNNAGG 1 cut(s) 827
BstF5I GGATG 8 cut(s) 749, 961, 988, 1075, 1461, 1594, 1740, 2254
BstFNI CGCG 4 cut(s) 113, 192, 206, 885
BstHHI GCGC 3 cut(s) 115, 192, 885
BstKTI GATC 4 cut(s) 13, 1239, 1797, 2008
BstMBI GATC 4 cut(s) 10, 1236, 1794, 2005
BstMWI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1336, 1406, 1643
BstNI CCWGG 6 cut(s) 935, 1385, 1648, 1800, 2045, 2320
BstNSI RCATGY 1 cut(s) 1580
BstSFI CTRYAG 2 cut(s) 2038, 2285
BstUI CGCG 4 cut(s) 113, 192, 206, 885
BstV2I GAAGAC 2 cut(s) 242, 1169
BstX2I RGATCY 1 cut(s) 1794
BstXI CCANNNNNNTGG 1 cut(s) 1391
BstYI RGATCY 1 cut(s) 1794
Bsu15I ATCGAT 2 cut(s) 599, 692
BsuRI GGCC 5 cut(s) 1232, 1383, 1388, 1847, 2251
BsuTUI ATCGAT 2 cut(s) 599, 692
BtgI CCRYGG 1 cut(s) 2417
BtsCI GGATG 8 cut(s) 749, 961, 988, 1075, 1461, 1594, 1740, 2254
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 4 cut(s) 122, 395, 1248, 1813
BveI ACCTGC 3 cut(s) 1414, 1441, 1532
Cac8I GCNNGC 2 cut(s) 680, 1368
CaiI CAGNNNCTG 2 cut(s) 1247, 1546
CfoI GCGC 3 cut(s) 115, 192, 885
Cfr13I GGNCC 5 cut(s) 97, 133, 165, 1387, 1990
ClaI ATCGAT 2 cut(s) 599, 692
Csp6I GTAC 4 cut(s) 875, 920, 1863, 1895
CviAII CATG 7 cut(s) 708, 979, 1009, 1565, 1577, 1967, 2418
CviQI GTAC 4 cut(s) 875, 920, 1863, 1895
DdeI CTNAG 7 cut(s) 258, 371, 753, 1045, 1188, 1743, 2009
DpnI GATC 4 cut(s) 12, 1238, 1796, 2007
DpnII GATC 4 cut(s) 10, 1236, 1794, 2005
DraI TTTAAA 1 cut(s) 1704
Eam1104I CTCTTC 7 cut(s) 24, 360, 480, 537, 955, 1126, 1419
EarI CTCTTC 7 cut(s) 24, 360, 480, 537, 955, 1126, 1419
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 3 cut(s) 127, 160, 736
Eco130I CCWWGG 5 cut(s) 55, 1323, 1390, 2246, 2417
Eco147I AGGCCT 1 cut(s) 2251
Eco24I GRGCYC 3 cut(s) 129, 162, 738
Eco47I GGWCC 4 cut(s) 97, 133, 165, 1990
Eco53kI GAGCTC 3 cut(s) 127, 160, 736
Eco57I CTGAAG 1 cut(s) 1806
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 3 cut(s) 127, 160, 736
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoO109I RGGNCCY 1 cut(s) 1387
EcoRI GAATTC 1 cut(s) 1763
EcoRII CCWGG 6 cut(s) 933, 1383, 1646, 1798, 2043, 2318
EcoT14I CCWWGG 5 cut(s) 55, 1323, 1390, 2246, 2417
EcoT38I GRGCYC 3 cut(s) 129, 162, 738
ErhI CCWWGG 5 cut(s) 55, 1323, 1390, 2246, 2417
FaeI CATG 7 cut(s) 711, 982, 1012, 1568, 1580, 1970, 2421
FalI AAGNNNNNCTT 4 cut(s) 1154, 1186, 1326, 1358
FaqI GGGAC 3 cut(s) 133, 786, 1544
FatI CATG 7 cut(s) 707, 978, 1008, 1564, 1576, 1966, 2417
FokI GGATG 8 cut(s) 756, 968, 995, 1082, 1468, 1601, 1747, 2241
FriOI GRGCYC 3 cut(s) 129, 162, 738
GlaI GCGC 3 cut(s) 114, 191, 884
GsuI CTGGAG 5 cut(s) 203, 704, 1821, 2114, 2302
HaeIII GGCC 5 cut(s) 1232, 1383, 1388, 1847, 2251
HapII CCGG 7 cut(s) 20, 151, 163, 169, 1052, 1091, 2276
HhaI GCGC 3 cut(s) 115, 192, 885
Hin1II CATG 7 cut(s) 711, 982, 1012, 1568, 1580, 1970, 2421
Hin6I GCGC 3 cut(s) 113, 190, 883
HinP1I GCGC 3 cut(s) 113, 190, 883
HindIII AAGCTT 2 cut(s) 87, 713
HpaII CCGG 7 cut(s) 20, 151, 163, 169, 1052, 1091, 2276
HphI GGTGA 9 cut(s) 100, 238, 566, 676, 856, 1204, 1262, 1502, 2292
Hpy166II GTNNAC 4 cut(s) 108, 860, 948, 1990
Hpy188I TCNGA 7 cut(s) 1048, 1571, 1786, 2053, 2229, 2340, 2462
Hpy188III TCNNGA 6 cut(s) 14, 163, 910, 1091, 1279, 1760
Hpy8I GTNNAC 4 cut(s) 108, 860, 948, 1990
Hpy99I CGWCG 1 cut(s) 2172
HpyCH4III ACNGT 4 cut(s) 1023, 1243, 1817, 1883
HpyCH4IV ACGT 2 cut(s) 1914, 2167
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1336, 1406, 1643
HpyF3I CTNAG 7 cut(s) 258, 371, 753, 1045, 1188, 1743, 2009
HpySE526I ACGT 2 cut(s) 1914, 2167
Hsp92II CATG 7 cut(s) 711, 982, 1012, 1568, 1580, 1970, 2421
HspAI GCGC 3 cut(s) 113, 190, 883
Kpn2I TCCGGA 2 cut(s) 162, 1090
Kzo9I GATC 4 cut(s) 10, 1236, 1794, 2005
LguI GCTCTTC 1 cut(s) 360
LweI GCATC 5 cut(s) 1060, 1309, 1418, 1446, 1579
MaeII ACGT 2 cut(s) 1914, 2167
MaeIII GTNAC 5 cut(s) 1104, 1250, 1720, 1946, 2310
MalI GATC 4 cut(s) 12, 1238, 1796, 2007
MbiI CCGCTC 2 cut(s) 1742, 2015
MboI GATC 4 cut(s) 10, 1236, 1794, 2005
MflI RGATCY 1 cut(s) 1794
MhlI GDGCHC 4 cut(s) 129, 162, 738, 1189
MlyI GAGTC 5 cut(s) 65, 152, 394, 1049, 1563
MmeI TCCRAC 5 cut(s) 15, 540, 1428, 1549, 1751
MroI TCCGGA 2 cut(s) 162, 1090
MroXI GAANNNNTTC 2 cut(s) 671, 1003
MslI CAYNNNNRTG 1 cut(s) 2276
MspA1I CMGCKG 3 cut(s) 1546, 1837, 2234
MspI CCGG 7 cut(s) 20, 151, 163, 169, 1052, 1091, 2276
Mva1269I GAATGC 1 cut(s) 2347
MvaI CCWGG 6 cut(s) 935, 1385, 1648, 1800, 2045, 2320
MvnI CGCG 4 cut(s) 113, 192, 206, 885
MwoI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1336, 1406, 1643
NciI CCSGG 5 cut(s) 20, 151, 169, 1052, 2276
NcoI CCATGG 1 cut(s) 2417
NdeII GATC 4 cut(s) 10, 1236, 1794, 2005
NlaIII CATG 7 cut(s) 711, 982, 1012, 1568, 1580, 1970, 2421
NlaIV GGNNCC 5 cut(s) 53, 167, 2161, 2332, 2423
NmuCI GTSAC 1 cut(s) 1250
NspI RCATGY 1 cut(s) 1580
NspV TTCGAA 1 cut(s) 2066
OliI CACNNNNGTG 1 cut(s) 2276
PacI TTAATTAA 1 cut(s) 1878
PaeR7I CTCGAG 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 1414
PceI AGGCCT 1 cut(s) 2251
PciI ACATGT 1 cut(s) 1576
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 1 cut(s) 2347
PdmI GAANNNNTTC 2 cut(s) 671, 1003
PfeI GAWTC 5 cut(s) 469, 869, 1004, 1030, 2048
PflMI CCANNNNNTGG 1 cut(s) 916
PfoI TCCNGGA 1 cut(s) 149
PleI GAGTC 5 cut(s) 65, 151, 393, 1048, 1562
PpsI GAGTC 5 cut(s) 65, 151, 393, 1048, 1562
Ppu21I YACGTR 1 cut(s) 1915
PscI ACATGT 1 cut(s) 1576
PshBI ATTAAT 1 cut(s) 1874
Psp124BI GAGCTC 3 cut(s) 129, 162, 738
Psp6I CCWGG 6 cut(s) 933, 1383, 1646, 1798, 2043, 2318
PspGI CCWGG 6 cut(s) 933, 1383, 1646, 1798, 2043, 2318
PspN4I GGNNCC 5 cut(s) 53, 167, 2161, 2332, 2423
PspPI GGNCC 5 cut(s) 97, 133, 165, 1387, 1990
PspXI VCTCGAGB 1 cut(s) 128
PstI CTGCAG 1 cut(s) 2289
PstNI CAGNNNCTG 2 cut(s) 1247, 1546
PsuI RGATCY 1 cut(s) 1794
PvuII CAGCTG 3 cut(s) 1546, 1837, 2234
RsaI GTAC 4 cut(s) 876, 921, 1864, 1896
RsaNI GTAC 4 cut(s) 875, 920, 1863, 1895
RseI CAYNNNNRTG 1 cut(s) 2276
SacI GAGCTC 3 cut(s) 129, 162, 738
SapI GCTCTTC 1 cut(s) 360
Sau3AI GATC 4 cut(s) 10, 1236, 1794, 2005
Sau96I GGNCC 5 cut(s) 97, 133, 165, 1387, 1990
SchI GAGTC 5 cut(s) 65, 152, 394, 1049, 1563
SduI GDGCHC 4 cut(s) 129, 162, 738, 1189
SfaNI GCATC 5 cut(s) 1060, 1309, 1418, 1446, 1579
SfcI CTRYAG 2 cut(s) 2038, 2285
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 2066
SinI GGWCC 4 cut(s) 97, 133, 165, 1990
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 2276
SmlI CTYRAG 2 cut(s) 128, 1279
SmoI CTYRAG 2 cut(s) 128, 1279
SseBI AGGCCT 1 cut(s) 2251
SsiI CCGC 7 cut(s) 111, 176, 206, 224, 298, 1740, 2015
SstI GAGCTC 3 cut(s) 129, 162, 738
StuI AGGCCT 1 cut(s) 2251
StyI CCWWGG 5 cut(s) 55, 1323, 1390, 2246, 2417
TaaI ACNGT 4 cut(s) 1023, 1243, 1817, 1883
TaiI ACGT 2 cut(s) 1917, 2170
TaqI TCGA 9 cut(s) 69, 129, 599, 692, 738, 1017, 1503, 2066, 2196
TaqII GACCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 5 cut(s) 469, 869, 1004, 1030, 2048
TscAI CASTG 4 cut(s) 122, 395, 1248, 1820
TseFI GTSAC 1 cut(s) 1250
Tsp45I GTSAC 1 cut(s) 1250
TspDTI ATGAA 6 cut(s) 737, 800, 967, 1610, 1943, 1986
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 4 cut(s) 122, 395, 1248, 1820
Van91I CCANNNNNTGG 1 cut(s) 916
VpaK11BI GGWCC 4 cut(s) 97, 133, 165, 1990
VspI ATTAAT 1 cut(s) 1874
XagI CCTNNNNNAGG 1 cut(s) 827
XapI RAATTY 2 cut(s) 802, 1763
XbaI TCTAGA 1 cut(s) 1759
XceI RCATGY 1 cut(s) 1580
XcmI CCANNNNNNNNNTGG 1 cut(s) 1240
XhoI CTCGAG 1 cut(s) 128
XmaJI CCTAGG 2 cut(s) 55, 2246
XmnI GAANNNNTTC 2 cut(s) 671, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.