RLG00000018794

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000126
Physical Location & Seq
Reverse (-)
36337664 .. 36341471
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018794

Sequence Viewer

Length: 2364 bp
ATGATTGCGAAATGTGATGAGGAGGTGAGGTTGAAGAAGGGGAGGATTAGTTTGATTCAGAAATCGATGATGGAATGTTCGTATACGTTGGAAGTGAGAGAGGGGAAGATCAGGGAGCGTAATGTGGCTTTTGGTTTGGTGAAGAGGCTATGGAGGGGTGGTGTTGAAGCGAGACAGCAGTTGGATGCACTGCAAAAGTCAGTGTGTGAGGGCGAAAAGAATTTGGATTCAGTTCGAATGGCAGCAGAGGAGCGTGAGAAGCTATTGGACTCGATAGGCCAGGGACTTGAAAGGAAAGAGAGGGAACTCGAACAGCGGGCCAATGAGCTTGAGTTTAAAAAGAGACAATTTGAATTGACGGTTGAGGAAGTTAATTCAGACGATAAGAGGGTCAATGAACGCCTCAATGAGTACAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGATTGAGCTTGAATTGAAGCAGAAACAATTTGATTCTCAAAGGAAGGCTAAGCATTTGGAACCTACCTCTGCTGCTAAAAATGCTAGTGTTGTTTCATCTACAAGAGATCAATCCTGGATCAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACCCCGCAAAATTGGTCTTGGATGCAATGCAAGGGTTTTATTCGTCAAATCTTACTGTGGAAAACAGAGAGTTTGAGTCACATTATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGCTGATTGGAAAGAGAAGATGGCAGTTACCGCTGATAATAGTTGGGAGGCTTTGGGCTTTTTGTGGCTTATCACTACGTATGAATTGACAAGTATTTATGATTTGAGGGAGCTTCAAAGTCTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCACATATAAGGCACCTGGGACGAATGTGGTTTCTTCCATTGTCAAGATTGAGCGATCAGAATCTTCGCTGGCCAGAAATGAAGCAACTCTTTCTCCTCCAAATAAATATTTACAGAATGAAACGATTGTTTCTCTTCCTTCTATTGTCAAGACTGAGGGACCCAAATCTTTTGGGGCTAGATCTGCAGCAACTATATCTTCACCAAATAATGCTGAGGGACCAGAATCTTCGCTGGCTAGAAATGAAGCAACTCCTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGGGGGACCCAAATCTTTTGGGGCTAGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGAATCTTCTCTCACTAGAATTGCAGCAACTCTTTCTTCACCGAATAATGCTTTACAGGAAAATCTGTTTGTCACTCTTAAATCATCATCAGACCCTGCAAAACTTGTGTTGGATTCGATGCAAGGGTCTCTTACGTATTACTGGAGAAATGGAGATGTTAGTTCCAAAGAAAAGGTTGTATCTGGTAACATTACTCTATTGAAGATTCTAATGGGACTGTCAACACATGTTGGACCTCATCTGAAAGAAAATGCAACAAATCTAGCATCCCGGTGGAAAGAAAAGTTGAGAGGTGATACTGAAAATTCACTGGAGAGTTTGGGGTATTTGCTGTTTATAGCTATGTATGAATTGCTTGGAACCTTACATGAAGATGAGATTGTAATGCTTCTTAGAAGGGTTTCACAGCATAAACAGTCTCTAGAGTTATGTCAGACACATGGTTTTGCAGATTATATCCCTGAGTTTATACGGAAGCTTATTGAAAAGAAGTCACTGATGGAGGCTGTTAGATCTATTTGTGCCTTCAAATTATTTGACAAGCTCCCCCCAGTGCCACTCTTAAAAGAATATGTGGATGATGTAATGATGTGTTCCGGAGTAATTTGCGGGTCACAGATGATACCTGATGAAAAGGATAAGGCTCTGAATGGTAAAATAGCTGATCTAAGAGCTGCCATTCAATGCATCAAAGATTACGACCTCGAGTCTGAATACCCCTCCAAGACTGTTGAATTGCAAATAGTTCAGCTTGAAATGCTGAAGGAAAAATGGAGCAGTTTGGCGCCATCTCTAGTACCCAAAGTTGAACAAGAAGAGAGAAAAAGGAAGAAGCCTTGTATTAGCTCTTCTGCCCCAAAGTTACAACCAGGTAAGGTGCCAAAAATAAAGTTCGTCTTCAGTGGTTCGAGACCTCAATGTGAAGCTCCACTCGTCCGAACTACAAAGGAACGGTTTACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

788

Amino Acids

88.32

Weight (kDa)

8.67

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 201 - 254 4.7e-07 Frigida-like protein
Frigida PF07899 267 - 343 1.1e-13 Frigida-like protein
Frigida PF07899 478 - 723 1.2e-50 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 1021, 2182, 2275
AccI GTMKAC 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 1994
AciI CCGC 4 cut(s) 316, 717, 861, 2007
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 2 cut(s) 220, 1702
AcuI CTGAAG 2 cut(s) 2180, 2281
AcyI GRCGYC 1 cut(s) 2183
AfaI GTAC 2 cut(s) 413, 2196
AfiI CCNNNNNNNGG 1 cut(s) 1329
AflIII ACRYGT 1 cut(s) 1624
AhdI GACNNNNNGTC 1 cut(s) 2104
AjnI CCWGG 4 cut(s) 279, 605, 1024, 2266
Alw26I GTCTC 5 cut(s) 166, 337, 1530, 1821, 2302
AlwI GGATC 1 cut(s) 617
AlwNI CAGNNNCTG 1 cut(s) 1493
Ama87I CYCGRG 1 cut(s) 2102
Aor13HI TCCGGA 1 cut(s) 1994
AoxI GGCC 4 cut(s) 277, 318, 485, 1080
ApeKI GCWGC 8 cut(s) 242, 563, 830, 983, 1196, 1361, 1421, 2072
ApoI RAATTY 2 cut(s) 220, 1702
Asp700I GAANNNNTTC 1 cut(s) 1798
AspLEI GCGC 1 cut(s) 2185
AspS9I GGNCC 6 cut(s) 318, 1169, 1229, 1334, 1394, 1631
AsuC2I CCSGG 1 cut(s) 1669
AsuHPI GGTGA 7 cut(s) 37, 151, 817, 1203, 1368, 1428, 1703
AsuII TTCGAA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 2102
AvaII GGWCC 5 cut(s) 1169, 1229, 1334, 1394, 1631
AxyI CCTNAGG 1 cut(s) 801
BaeGI GKGCMC 1 cut(s) 1003
BalI TGGCCA 1 cut(s) 1082
BanI GGYRCC 3 cut(s) 1021, 2182, 2275
BarI GAAGNNNNNNTAC 2 cut(s) 2230, 2262
BbsI GAAGAC 2 cut(s) 944, 2287
BbvCI CCTCAGC 2 cut(s) 1224, 1389
BbvI GCAGC 8 cut(s) 254, 550, 842, 970, 1208, 1373, 1433, 2059
BccI CCATC 6 cut(s) 64, 442, 614, 844, 1891, 2194
BciT130I CCWGG 4 cut(s) 281, 607, 1026, 2268
BcnI CCSGG 1 cut(s) 1669
BcoDI GTCTC 5 cut(s) 166, 337, 1530, 1821, 2302
BfaI CTAG 8 cut(s) 576, 1188, 1248, 1353, 1413, 1661, 1820, 2192
BfmI CTRYAG 1 cut(s) 1194
BfoI RGCGCY 1 cut(s) 2186
BglII AGATCT 2 cut(s) 1190, 1910
BisI GCNGC 8 cut(s) 243, 564, 831, 984, 1197, 1362, 1422, 2073
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 8 cut(s) 244, 565, 832, 985, 1198, 1363, 1423, 2074
Bme1390I CCNGG 5 cut(s) 281, 607, 1026, 1669, 2268
Bme18I GGWCC 5 cut(s) 1169, 1229, 1334, 1394, 1631
BmeRI GACNNNNNGTC 1 cut(s) 2104
BmeT110I CYCGRG 1 cut(s) 2102
BmgT120I GGNCC 6 cut(s) 318, 1169, 1229, 1334, 1394, 1631
BmrFI CCNGG 5 cut(s) 281, 607, 1026, 1669, 2268
BmrI ACTGGG 2 cut(s) 1338, 1943
BmsI GCATC 6 cut(s) 175, 713, 724, 1506, 1673, 2094
BmuI ACTGGG 2 cut(s) 1338, 1943
BpiI GAAGAC 2 cut(s) 944, 2287
BpmI CTGGAG 2 cut(s) 1561, 1730
Bpu10I CCTNAGC 2 cut(s) 1224, 1389
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 1669
Bsa29I ATCGAT 1 cut(s) 65
BsaAI YACGTR 2 cut(s) 909, 1533
BsaBI GATNNNNATC 1 cut(s) 1069
BsaHI GRCGYC 1 cut(s) 2183
BsaI GGTCTC 2 cut(s) 1530, 2302
BsaJI CCNNGG 2 cut(s) 280, 1025
BsaWI WCCGGW 1 cut(s) 1994
Bsc4I CCNNNNNNNGG 1 cut(s) 1329
Bse1I ACTGG 4 cut(s) 1333, 1544, 1713, 1949
Bse21I CCTNAGG 1 cut(s) 801
Bse3DI GCAATG 2 cut(s) 744, 1317
Bse8I GATNNNNATC 1 cut(s) 1069
BseAI TCCGGA 1 cut(s) 1994
BseBI CCWGG 4 cut(s) 281, 607, 1026, 2268
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 280, 1025
BseGI GGATG 5 cut(s) 190, 625, 739, 1664, 1981
BseJI GATNNNNATC 1 cut(s) 1069
BseLI CCNNNNNNNGG 1 cut(s) 1329
BseMI GCAATG 2 cut(s) 744, 1317
BseMII CTCAG 6 cut(s) 815, 983, 1155, 1215, 1380, 1851
BseNI ACTGG 4 cut(s) 1333, 1544, 1713, 1949
BseRI GAGGAG 4 cut(s) 35, 263, 1095, 1260
BseSI GKGCMC 1 cut(s) 1003
BseXI GCAGC 8 cut(s) 254, 550, 842, 970, 1208, 1373, 1433, 2059
BshFI GGCC 4 cut(s) 279, 320, 487, 1082
BshNI GGYRCC 3 cut(s) 1021, 2182, 2275
BshVI ATCGAT 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 2102
BsiSI CCGG 2 cut(s) 1669, 1995
BslFI GGGAC 7 cut(s) 297, 1042, 1182, 1242, 1347, 1407, 1626
BslI CCNNNNNNNGG 1 cut(s) 1329
BsmAI GTCTC 5 cut(s) 166, 337, 1530, 1821, 2302
BsmFI GGGAC 7 cut(s) 297, 1042, 1182, 1242, 1347, 1407, 1626
BsnI GGCC 4 cut(s) 279, 320, 487, 1082
Bso31I GGTCTC 2 cut(s) 1530, 2302
BsoBI CYCGRG 1 cut(s) 2102
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 1994
Bsp143I GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 4 cut(s) 316, 717, 861, 2007
BspANI GGCC 4 cut(s) 279, 320, 487, 1082
BspCNI CTCAG 6 cut(s) 814, 982, 1156, 1216, 1381, 1852
BspDI ATCGAT 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 1994
BspHI TCATGA 1 cut(s) 642
BspMAI CTGCAG 1 cut(s) 1198
BspPI GGATC 1 cut(s) 617
BspQI GCTCTTC 1 cut(s) 2251
BspT104I TTCGAA 1 cut(s) 235
BspT107I GGYRCC 3 cut(s) 1021, 2182, 2275
BspTNI GGTCTC 2 cut(s) 1530, 2302
BsrDI GCAATG 2 cut(s) 744, 1317
BsrI ACTGG 4 cut(s) 1333, 1544, 1713, 1949
BssECI CCNNGG 2 cut(s) 280, 1025
BssMI GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
BssNAI GTATAC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 2183
Bst1107I GTATAC 1 cut(s) 84
Bst2UI CCWGG 4 cut(s) 281, 607, 1026, 2268
Bst4CI ACNGT 7 cut(s) 361, 636, 769, 1617, 1815, 2128, 2352
Bst6I CTCTTC 5 cut(s) 137, 1149, 1314, 2208, 2251
BstACI GRCGYC 1 cut(s) 2183
BstBAI YACGTR 2 cut(s) 909, 1533
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 4 cut(s) 318, 485, 1080, 1245
BstDEI CTNAG 9 cut(s) 540, 801, 969, 1164, 1224, 1389, 1790, 1860, 2066
BstF5I GGATG 5 cut(s) 190, 625, 739, 1664, 1981
BstH2I RGCGCY 1 cut(s) 2186
BstHHI GCGC 1 cut(s) 2185
BstKTI GATC 7 cut(s) 111, 601, 612, 1067, 1193, 1913, 2065
BstMAI GTCTC 5 cut(s) 166, 337, 1530, 1821, 2302
BstMBI GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
BstMWI GCNNNNNNNGC 6 cut(s) 259, 572, 860, 1193, 1358, 2155
BstNI CCWGG 4 cut(s) 281, 607, 1026, 2268
BstNSI RCATGY 1 cut(s) 1628
BstSCI CCNGG 5 cut(s) 279, 605, 1024, 1667, 2266
BstSFI CTRYAG 1 cut(s) 1194
BstSLI GKGCMC 1 cut(s) 1003
BstSNI TACGTA 2 cut(s) 909, 1533
BstV1I GCAGC 8 cut(s) 254, 550, 842, 970, 1208, 1373, 1433, 2059
BstV2I GAAGAC 2 cut(s) 944, 2287
BstX2I RGATCY 2 cut(s) 1190, 1910
BstYI RGATCY 2 cut(s) 1190, 1910
BstZ17I GTATAC 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 801
BsuRI GGCC 4 cut(s) 279, 320, 487, 1082
BsuTUI ATCGAT 1 cut(s) 65
BtsCI GGATG 5 cut(s) 190, 625, 739, 1664, 1981
BtsI GCAGTG 2 cut(s) 188, 825
BtsIMutI CAGTG 7 cut(s) 188, 207, 825, 1706, 1892, 1956, 2305
Cac8I GCNNGC 4 cut(s) 318, 485, 1080, 1245
CaiI CAGNNNCTG 1 cut(s) 1493
CciI TCATGA 1 cut(s) 642
CfoI GCGC 1 cut(s) 2185
Cfr13I GGNCC 6 cut(s) 318, 1169, 1229, 1334, 1394, 1631
ClaI ATCGAT 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 2266
Csp6I GTAC 2 cut(s) 412, 2195
CviAII CATG 5 cut(s) 616, 643, 1625, 1766, 1838
CviQI GTAC 2 cut(s) 412, 2195
DdeI CTNAG 9 cut(s) 540, 801, 969, 1164, 1224, 1389, 1790, 1860, 2066
DinI GGCGCC 1 cut(s) 2184
DpnI GATC 7 cut(s) 110, 600, 611, 1066, 1192, 1912, 2064
DpnII GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
DraI TTTAAA 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 2104
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 5 cut(s) 137, 1149, 1314, 2208, 2251
Eam1105I GACNNNNNGTC 1 cut(s) 2104
EarI CTCTTC 5 cut(s) 137, 1149, 1314, 2208, 2251
Eco105I TACGTA 2 cut(s) 909, 1533
Eco31I GGTCTC 2 cut(s) 1530, 2302
Eco47I GGWCC 5 cut(s) 1169, 1229, 1334, 1394, 1631
Eco57I CTGAAG 2 cut(s) 2180, 2281
Eco81I CCTNAGG 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 2102
EcoO109I RGGNCCY 2 cut(s) 1169, 1334
EcoRII CCWGG 4 cut(s) 279, 605, 1024, 2266
EcoT22I ATGCAT 1 cut(s) 2087
EgeI GGCGCC 1 cut(s) 2184
EheI GGCGCC 1 cut(s) 2184
FaeI CATG 5 cut(s) 619, 646, 1628, 1769, 1841
FalI AAGNNNNNCTT 6 cut(s) 1083, 1115, 1512, 1544, 2279, 2311
FaqI GGGAC 7 cut(s) 297, 1042, 1182, 1242, 1347, 1407, 1626
FatI CATG 5 cut(s) 615, 642, 1624, 1765, 1837
FauI CCCGC 3 cut(s) 309, 724, 2000
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 8 cut(s) 243, 564, 831, 984, 1197, 1362, 1422, 2073
FokI GGATG 5 cut(s) 197, 632, 746, 1651, 1988
Fsp4HI GCNGC 8 cut(s) 243, 564, 831, 984, 1197, 1362, 1422, 2073
FspBI CTAG 8 cut(s) 576, 1188, 1248, 1353, 1413, 1661, 1820, 2192
GlaI GCGC 1 cut(s) 2184
GluI GCNGC 8 cut(s) 243, 564, 831, 984, 1197, 1362, 1422, 2073
GsuI CTGGAG 2 cut(s) 1561, 1730
HaeII RGCGCY 1 cut(s) 2186
HaeIII GGCC 4 cut(s) 279, 320, 487, 1082
HapII CCGG 2 cut(s) 1669, 1995
HhaI GCGC 1 cut(s) 2185
Hin1I GRCGYC 1 cut(s) 2183
Hin1II CATG 5 cut(s) 619, 646, 1628, 1769, 1841
Hin6I GCGC 1 cut(s) 2183
HinP1I GCGC 1 cut(s) 2183
HincII GTYRAC 1 cut(s) 1620
HindII GTYRAC 1 cut(s) 1620
HindIII AAGCTT 2 cut(s) 628, 1874
HpaII CCGG 2 cut(s) 1669, 1995
HphI GGTGA 7 cut(s) 37, 151, 817, 1203, 1368, 1428, 1703
Hpy166II GTNNAC 3 cut(s) 84, 1620, 2355
Hpy188III TCNNGA 6 cut(s) 643, 1054, 1159, 1820, 1995, 2307
Hpy8I GTNNAC 3 cut(s) 84, 1620, 2355
HpyAV CCTTC 8 cut(s) 31, 529, 1158, 1275, 1323, 1788, 1933, 2155
HpyCH4III ACNGT 7 cut(s) 361, 636, 769, 1617, 1815, 2128, 2352
HpyCH4IV ACGT 3 cut(s) 86, 908, 1532
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 572, 860, 1193, 1358, 2155
HpyF3I CTNAG 9 cut(s) 540, 801, 969, 1164, 1224, 1389, 1790, 1860, 2066
HpySE526I ACGT 3 cut(s) 86, 908, 1532
Hsp92I GRCGYC 1 cut(s) 2183
Hsp92II CATG 5 cut(s) 619, 646, 1628, 1769, 1841
HspAI GCGC 1 cut(s) 2183
KasI GGCGCC 1 cut(s) 2182
KflI GGGWCCC 2 cut(s) 1169, 1334
Kpn2I TCCGGA 1 cut(s) 1994
Kzo9I GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
LguI GCTCTTC 1 cut(s) 2251
LmnI GCTCC 6 cut(s) 115, 250, 940, 1947, 2172, 2329
Lsp1109I GCAGC 8 cut(s) 254, 550, 842, 970, 1208, 1373, 1433, 2059
LweI GCATC 6 cut(s) 175, 713, 724, 1506, 1673, 2094
MabI ACCWGGT 1 cut(s) 2266
MaeI CTAG 8 cut(s) 576, 1188, 1248, 1353, 1413, 1661, 1820, 2192
MaeII ACGT 3 cut(s) 86, 908, 1532
MaeIII GTNAC 7 cut(s) 789, 856, 1468, 1583, 1890, 2010, 2259
MalI GATC 7 cut(s) 110, 600, 611, 1066, 1192, 1912, 2064
MboI GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
MflI RGATCY 2 cut(s) 1190, 1910
MhlI GDGCHC 1 cut(s) 1003
MlsI TGGCCA 1 cut(s) 1082
MluNI TGGCCA 1 cut(s) 1082
Mly113I GGCGCC 1 cut(s) 2183
MlyI GAGTC 3 cut(s) 263, 797, 2114
MmeI TCCRAC 5 cut(s) 69, 162, 413, 1488, 1609
Mox20I TGGCCA 1 cut(s) 1082
Mph1103I ATGCAT 1 cut(s) 2087
MroI TCCGGA 1 cut(s) 1994
MroXI GAANNNNTTC 1 cut(s) 1798
MscI TGGCCA 1 cut(s) 1082
MseI TTAA 5 cut(s) 336, 372, 992, 1476, 1961
MslI CAYNNNNRTG 2 cut(s) 1669, 1770
Msp20I TGGCCA 1 cut(s) 1082
MspA1I CMGCKG 4 cut(s) 316, 692, 833, 863
MspI CCGG 2 cut(s) 1669, 1995
MspR9I CCNGG 5 cut(s) 281, 607, 1026, 1669, 2268
MvaI CCWGG 4 cut(s) 281, 607, 1026, 2268
MwoI GCNNNNNNNGC 6 cut(s) 259, 572, 860, 1193, 1358, 2155
NarI GGCGCC 1 cut(s) 2183
NciI CCSGG 1 cut(s) 1669
NdeII GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
NlaIII CATG 5 cut(s) 619, 646, 1628, 1769, 1841
NmuCI GTSAC 4 cut(s) 789, 1468, 1890, 2010
NsiI ATGCAT 1 cut(s) 2087
NspI RCATGY 1 cut(s) 1628
NspV TTCGAA 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 2102
PagI TCATGA 1 cut(s) 642
PciI ACATGT 1 cut(s) 1624
PciSI GCTCTTC 1 cut(s) 2251
PdmI GAANNNNTTC 1 cut(s) 1798
PfeI GAWTC 9 cut(s) 55, 227, 436, 524, 1070, 1235, 1400, 1511, 1603
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 8 cut(s) 244, 565, 832, 985, 1198, 1363, 1423, 2074
PleI GAGTC 3 cut(s) 263, 796, 2113
PluTI GGCGCC 1 cut(s) 2186
PpsI GAGTC 3 cut(s) 263, 796, 2113
Ppu21I YACGTR 2 cut(s) 909, 1533
PpuMI RGGWCCY 2 cut(s) 1169, 1334
PscI ACATGT 1 cut(s) 1624
Psp5II RGGWCCY 2 cut(s) 1169, 1334
Psp6I CCWGG 4 cut(s) 279, 605, 1024, 2266
PspGI CCWGG 4 cut(s) 279, 605, 1024, 2266
PspPI GGNCC 6 cut(s) 318, 1169, 1229, 1334, 1394, 1631
PspPPI RGGWCCY 2 cut(s) 1169, 1334
PspXI VCTCGAGB 1 cut(s) 2102
PstI CTGCAG 1 cut(s) 1198
PstNI CAGNNNCTG 1 cut(s) 1493
PsuI RGATCY 2 cut(s) 1190, 1910
PvuII CAGCTG 2 cut(s) 692, 833
RsaI GTAC 2 cut(s) 413, 2196
RsaNI GTAC 2 cut(s) 412, 2195
RseI CAYNNNNRTG 2 cut(s) 1669, 1770
SapI GCTCTTC 1 cut(s) 2251
SaqAI TTAA 5 cut(s) 336, 372, 992, 1476, 1961
SatI GCNGC 8 cut(s) 243, 564, 831, 984, 1197, 1362, 1422, 2073
Sau3AI GATC 7 cut(s) 108, 598, 609, 1064, 1190, 1910, 2062
Sau96I GGNCC 6 cut(s) 318, 1169, 1229, 1334, 1394, 1631
SchI GAGTC 3 cut(s) 263, 797, 2114
ScrFI CCNGG 5 cut(s) 281, 607, 1026, 1669, 2268
SduI GDGCHC 1 cut(s) 1003
SexAI ACCWGGT 1 cut(s) 2266
SfaNI GCATC 6 cut(s) 175, 713, 724, 1506, 1673, 2094
SfcI CTRYAG 1 cut(s) 1194
SfoI GGCGCC 1 cut(s) 2184
Sfr274I CTCGAG 1 cut(s) 2102
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 5 cut(s) 1169, 1229, 1334, 1394, 1631
SlaI CTCGAG 1 cut(s) 2102
SmiMI CAYNNNNRTG 2 cut(s) 1669, 1770
SmlI CTYRAG 2 cut(s) 329, 2102
SmoI CTYRAG 2 cut(s) 329, 2102
SnaBI TACGTA 2 cut(s) 909, 1533
SsiI CCGC 4 cut(s) 316, 717, 861, 2007
SspDI GGCGCC 1 cut(s) 2182
SspI AATATT 2 cut(s) 1118, 1283
SspMI CTAG 8 cut(s) 576, 1188, 1248, 1353, 1413, 1661, 1820, 2192
StyD4I CCNGG 5 cut(s) 279, 605, 1024, 1667, 2266
TaaI ACNGT 7 cut(s) 361, 636, 769, 1617, 1815, 2128, 2352
TaiI ACGT 3 cut(s) 89, 911, 1535
TaqI TCGA 7 cut(s) 65, 235, 272, 309, 1514, 2103, 2306
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 9 cut(s) 55, 227, 436, 524, 1070, 1235, 1400, 1511, 1603
Tru1I TTAA 5 cut(s) 336, 372, 992, 1476, 1961
Tru9I TTAA 5 cut(s) 336, 372, 992, 1476, 1961
TscAI CASTG 7 cut(s) 195, 207, 825, 1713, 1899, 1956, 2305
TseFI GTSAC 4 cut(s) 789, 1468, 1890, 2010
TseI GCWGC 8 cut(s) 242, 563, 830, 983, 1196, 1361, 1421, 2072
Tsp45I GTSAC 4 cut(s) 789, 1468, 1890, 2010
TspGWI ACGGA 1 cut(s) 1885
TspRI CASTG 7 cut(s) 195, 207, 825, 1713, 1899, 1956, 2305
VpaK11BI GGWCC 5 cut(s) 1169, 1229, 1334, 1394, 1631
XapI RAATTY 2 cut(s) 220, 1702
XbaI TCTAGA 1 cut(s) 1819
XceI RCATGY 1 cut(s) 1628
XhoI CTCGAG 1 cut(s) 2102
XmiI GTMKAC 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 1798
XspI CTAG 8 cut(s) 576, 1188, 1248, 1353, 1413, 1661, 1820, 2192
Zsp2I ATGCAT 1 cut(s) 2087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.