MD12G1230000.v1.1

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000126
Physical Location & Seq
Reverse (-)
30505388 .. 30506149
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1230000.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGAGAAGATAGAGGTAGAATTGAAGGAGGCGGAGACGAAGCAGAGGAGTCTGAGCAAGGCGTACGAGTGCGTACACGCGCAGGCGACTGCGCTTATTATCTTCGCCGTGCAATGGAAGGACCTGGAGGAGCACTTTGAGTCGACTCGGTACTCGCTCGAGTCGCGATTCCGGGAACTCACCCACCGCGAGACGGCGGTCCGTGTGCGGGACGAGGAGTTGGCGGCGAAGGAGATGAAGTTCAACTCGGAAGTTGAATCGAAAGCGGACGAGTTGGGGAGGATTCAGAGTCTGATCGACGAGAAGGCTGAGGAGGTTATACAGAGTAAGAACCACTTGCAATCTCTCCAGTCTTTGATTCTGGAACATAACAATGAGGTTATGGTGCAAGAGAAGATTTTAGTGGAGGTTGAGAGTTTCGTTGGGGAGAGGAAGAGGGAGTGCGATTCGATTGAGAGACGGGTTAAAGAGAGGATGAAGAAGTTGAACTGGGTTGAGAGAATGGTGGGGGAGAAGTCGAAATTGGCTGAGTTGAAGGCGGAGAAAGTGAGGGGGTTTGAAGAGGCGTTGGAGAAGTGTGTAGAGAAGACTGAGTTGAAGGAGAGGGAGTTGAATGAGATTATCGGGTCGATTGAGGAGCGCAAGGAGGAGTTCAGTTGGATAAGAGAGCAGATTTTGGAGGCGGAAAAGTTGATTAAGGTGCAAGAGGAGCAGTTGGATTTGAAAGGAGAAAAATTTATGGAGGTGCAAAAGGCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

254

Amino Acids

29.89

Weight (kDa)

5.18

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AccII CGCG 3 cut(s) 80, 166, 189
AciI CCGC 9 cut(s) 32, 187, 197, 208, 224, 266, 539, 683, 755
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 3 cut(s) 65, 75, 152
AfiI CCNNNNNNNGG 3 cut(s) 114, 193, 208
AgsI TTSAA 9 cut(s) 25, 244, 257, 487, 535, 560, 598, 613, 724
AjnI CCWGG 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 29, 185, 451
AlwNI CAGNNNCTG 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 158
ApoI RAATTY 1 cut(s) 734
AspLEI GCGC 3 cut(s) 82, 94, 642
AspS9I GGNCC 2 cut(s) 121, 199
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 121, 199
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 309
BceAI ACGGC 2 cut(s) 92, 210
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 1 cut(s) 173
BcoDI GTCTC 3 cut(s) 29, 185, 451
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 125, 173
Bme18I GGWCC 2 cut(s) 121, 199
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 121, 199
BmrFI CCNGG 2 cut(s) 125, 173
BmrI ACTGGG 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 593
BpmI CTGGAG 2 cut(s) 146, 332
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 593, 623
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 193, 208
Bse1I ACTGG 2 cut(s) 349, 494
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 114, 193, 208
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 4 cut(s) 44, 300, 519, 582
BseNI ACTGG 2 cut(s) 349, 494
BseRI GAGGAG 7 cut(s) 61, 143, 230, 326, 650, 662, 722
Bsh1236I CGCG 3 cut(s) 80, 166, 189
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 172
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 114, 193, 208
BsmAI GTCTC 3 cut(s) 29, 185, 451
BsmBI CGTCTC 3 cut(s) 29, 185, 451
BsmFI GGGAC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 294
Bsp68I TCGCGA 1 cut(s) 166
BspACI CCGC 9 cut(s) 32, 187, 197, 208, 224, 266, 539, 683, 755
BspCNI CTCAG 4 cut(s) 45, 301, 520, 583
BspFNI CGCG 3 cut(s) 80, 166, 189
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 2 cut(s) 349, 494
BssMI GATC 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 428, 555
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 53, 309, 528, 591
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 3 cut(s) 80, 166, 189
BstHHI GCGC 3 cut(s) 82, 94, 642
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 3 cut(s) 29, 185, 451
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 163, 709
BstNI CCWGG 1 cut(s) 125
BstPAI GACNNNNGTC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 123, 171
BstUI CGCG 3 cut(s) 80, 166, 189
BstV2I GAAGAC 1 cut(s) 593
BtsCI GGATG 1 cut(s) 480
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 292
CfoI GCGC 3 cut(s) 82, 94, 642
Cfr13I GGNCC 2 cut(s) 121, 199
CpoI CGGWCCG 1 cut(s) 199
Csp6I GTAC 3 cut(s) 64, 74, 151
CspI CGGWCCG 1 cut(s) 199
CviJI RGCY 2 cut(s) 308, 527
CviKI_1 RGCY 2 cut(s) 308, 527
CviQI GTAC 3 cut(s) 64, 74, 151
DdeI CTNAG 4 cut(s) 53, 309, 528, 591
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 428, 555
EarI CTCTTC 2 cut(s) 428, 555
EciI GGCGGA 3 cut(s) 47, 554, 698
Eco47I GGWCC 2 cut(s) 121, 199
Eco88I CYCGRG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 123
Esp3I CGTCTC 3 cut(s) 29, 185, 451
FaiI YATR 4 cut(s) 320, 369, 383, 740
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 224
FauI CCCGC 1 cut(s) 201
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 225
GlaI GCGC 3 cut(s) 81, 93, 641
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 146, 332
HapII CCGG 1 cut(s) 172
HhaI GCGC 3 cut(s) 82, 94, 642
Hin6I GCGC 3 cut(s) 80, 92, 640
HinP1I GCGC 3 cut(s) 80, 92, 640
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 76, 144
Hpy188I TCNGA 4 cut(s) 54, 250, 288, 294
Hpy188III TCNNGA 2 cut(s) 165, 362
Hpy8I GTNNAC 2 cut(s) 76, 144
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 19, 112, 223, 298, 529, 592
HpyCH4V TGCA 5 cut(s) 112, 340, 388, 703, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 709
HpyF3I CTNAG 4 cut(s) 53, 309, 528, 591
HspAI GCGC 3 cut(s) 80, 92, 640
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 3 cut(s) 130, 637, 709
LpnPI CCDG 7 cut(s) 68, 110, 137, 185, 347, 362, 475
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 7 cut(s) 19, 94, 406, 445, 490, 572, 598
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 20, 521, 734
MlyI GAGTC 5 cut(s) 58, 139, 149, 170, 298
MmeI TCCRAC 3 cut(s) 549, 638, 696
MseI TTAA 3 cut(s) 465, 696, 760
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 125, 173
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 3 cut(s) 80, 166, 189
MwoI GCNNNNNNNGC 2 cut(s) 163, 709
NciI CCSGG 1 cut(s) 173
NdeII GATC 1 cut(s) 294
NruI TCGCGA 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 158
PfeI GAWTC 5 cut(s) 168, 257, 283, 358, 446
Pfl23II CGTACG 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 5 cut(s) 57, 139, 148, 169, 297
PpsI GAGTC 5 cut(s) 57, 139, 148, 169, 297
PpuMI RGGWCCY 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 2 cut(s) 121, 199
PspPPI RGGWCCY 1 cut(s) 121
PspXI VCTCGAGB 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 292
RruI TCGCGA 1 cut(s) 166
RsaI GTAC 3 cut(s) 65, 75, 152
RsaNI GTAC 3 cut(s) 64, 74, 151
RseI CAYNNNNRTG 1 cut(s) 372
Rsr2I CGGWCCG 1 cut(s) 199
RsrII CGGWCCG 1 cut(s) 199
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 465, 696, 760
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 121, 199
SchI GAGTC 5 cut(s) 58, 139, 149, 170, 298
ScrFI CCNGG 2 cut(s) 125, 173
SduI GDGCHC 1 cut(s) 135
SetI ASST 7 cut(s) 18, 126, 318, 381, 411, 702, 747
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 121, 199
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 20, 521, 734
SsiI CCGC 9 cut(s) 32, 187, 197, 208, 224, 266, 539, 683, 755
StyD4I CCNGG 2 cut(s) 123, 171
TaqI TCGA 7 cut(s) 143, 159, 260, 297, 449, 518, 629
TasI AATT 3 cut(s) 20, 521, 734
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 5 cut(s) 168, 257, 283, 358, 446
Tru1I TTAA 3 cut(s) 465, 696, 760
Tru9I TTAA 3 cut(s) 465, 696, 760
TspDTI ATGAA 2 cut(s) 251, 491
TspGWI ACGGA 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 121, 199
XapI RAATTY 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.