Rorug07G0093400

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000126
Physical Location & Seq
Forward (+)
7315252 .. 7324347
9096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0093400.1

Sequence Viewer

Length: 2415 bp
ATGACTTTCGCAAAGCTCGATGATTCGCCAATGTTCCGCCAGCAGTTGCAAGGCTTGGAAGAAGGGGCAGAGGCATTGAGGGGAAGGTGTTCTAAGTTTTACAAAGGATGTCGAAAGTACACAGAAGGGCTTGGAGAAGCATACGATGGGGAAATTGCTTTTGTAACTGCCCTTGAAACTTTTGGGGGAGGGCATGGTGATCCTATTTTTTCAGCAATGGGGGGCCATATCATGACGAATTTCACAATTGCATTGAGAGAAATCGGAACATACAAGGAAGTTTTGCGGTCACAGGTAGAGCACATGCTAAATGATAGGCTGCTGCAATTTGTAAATGTTGACCTCCAAGATCTCAAGGAAGCCAGAAAGCGTTTCGACAAGGCTTCACTTATATATGATCAGGCACGTGAGAAGTTTCTGTCATTGAGGAAGAGCACTAGGCTGGATATAGCTGCTAGTATAGAGGAGGAACTGAATAATGCAAGATCCTCATTTGAGCAAGCCCGCTTCAACCTGGTTACTGCTCTCTCTGATATTGAGGCCAAAAAGAAGTTTGAGTTTCAGGAAGCTGTTAGTGGGGTGATGGATGCTCATCTTCGTTACTTCAAACAGGGATATGAGCTACTGCACACAATGGAACCCTATATTCATCAGGTTTTGGAGTATGCACAACATACGAGAGAAAGTGCCAACCAGGAACAGATATCGCTTAATGAAAGAATAGTAGAGTACAGAAGGCAGATTGATAGGGAAAGTAGGCAGTCCTTACGTGGTGTTCATGGTTCTTTTAGTGGAGATGGTATGCAGACTTTGGCTAGAAGATCAAATAAACTGATAGAGGAAGTGATGCAATCTGCTGCAAAGGGGAAGATTCAAACCATTCGTCAAGGATATCTCTCAAAACGGTCCTCCAATTTGAGAGGCGACTGGAAAAGAAGGTATTTCATTCTTGATAGTCGAGGGATGCTGTATTACTATCGCAAACCATGGAACCGGTCATCTTCTTCTCCACAGAAGAATAATTCCTCCGACTATGGCTCTGGGATTTTGAGTCGATGGCTTTCTTCCCACTATCATGGTGGTGTACATGATGAAAAATCTGTTGCACGTCACACTGTGAACTTGCTGACATCAACAATTAAGGTTGATGCAGACCAGACAGACTTAAGATTCTGCTTCAGGATTATATCACCTTTAAAAATTTACACTTTGCAGGCAGAGAATGCACTCGACCAAATGGAATGGATTGAGAAAATCACTGGAGTAATTTCTTCATTATTGAGTTTCCAGGCACCTGAGAGGCGTCTGTTAGCTAGCTCTATGGGTAGCGACGGTCATTTCTCTGCAAGCGAGAGCAATTCATTAGAAAGTTATCCTGATGTTGATCAGACAGCTATTCAGGACCAGTCACCAAAAATATTCACTAATAATTATTTGCGTACCTATAGAAGTTTGCAACCGCATAAGCCGAGTGTGAAAACTGAGAAGCCAATTGAGATATTGAGAAGAGTACGTGGTAATGACAAGTGTGCTGATTGTGGGGCACCTGACCCAGATTGGGCATCCTTAAACCTTGGTATTCTTATTTGCATTGAATGTTCTGGTGTTCATCGCAATCTTGGTGTACATGTATCAAAGGTTAGATCACTGACACTTGATGTGAAAGTATGGGAACCGTCTGTCTTAATCTTGTTTCAATCACTGGGGAATACTTATGCAAACTCGATTTGGGAGGAGATGTTGCCTTCAAAAAGTACTTCACAGGCTGATGATATTCTTACTGGTTTTTTCAAGTCTGATAGAAATTCAATTGATCAATCTCTTATGACAAAGCCCTGTTATGATAATCTGATTTCAGTAAAGGAGAGATTTATTCAAGCAAAGTATGCAGAAAAACGTTTTGTTCGCCCCAGAAAGATCAGTCAGAAACTCCACCCTGTGGAGCAACAGTTGTGGAAAAGTGTCTGTACTAATGACAAGCAAGCTGTTTACCGCTATATTGTCAGCTTTGAAGCTGATATTAATGCTGTATGTGGGAAAGCATTATGTGATAATTCAATGGACAAGCCTTCCTCAAGTAATTCAAATTTATCAAGTAGAAGTGAAGATCGCCTCATAGAAAACATCCCTGAGGGTTGTTCCCTGCTTCACCTAGCCTGCCAAATTGCTGATATTGGCATGGTGGAGCTACTTTTACAGTATGGTGCAAATATAAATGCTTCTGATTCAAAAGGCCAAACGCCACTCCATTATTGTGTTATGAGAGGGAATCCTGCTATTACAAAGATGCTTCTCATGAGAGGAGCAGATCCTCAAGCCACTGACAGAGAAGGTAAAACACCATGTAAGCTTGTATCAGAGTCAGCCTTGAATGACAATGGGATGCTTTCTATGCTGACAAACTCAGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

804

Amino Acids

91.03

Weight (kDa)

8.51

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAR_3 PF16746 6 - 234 5.6e-37 BAR domain of APPL family
BAR PF03114 64 - 216 5.8e-14 BAR domain
PH PF00169 294 - 423 3e-11 PH domain
ArfGap PF01412 497 - 589 8e-32 Putative GTPase activating protein for Arf
Ank_2 PF12796 708 - 775 8.9e-13 Ankyrin repeats (3 copies)
Ank PF00023 712 - 742 3.4e-06 Ankyrin repeat
Ank_4 PF13637 716 - 765 2.7e-10 Ankyrin repeats (many copies)
Ank_5 PF13857 731 - 781 3e-08 Ankyrin repeats (many copies)
Ank PF00023 745 - 776 2e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1291, 1543
AccB7I CCANNNNNTGG 1 cut(s) 1939
AciI CCGC 5 cut(s) 37, 286, 505, 1460, 1993
AclI AACGTT 1 cut(s) 1897
AclWI GGATC 3 cut(s) 194, 480, 2303
AcsI RAATTY 4 cut(s) 238, 1200, 1804, 2086
AcuI CTGAAG 1 cut(s) 1162
AcvI CACGTG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 1303
AdeI CACNNNGTG 2 cut(s) 1117, 1939
AfaI GTAC 8 cut(s) 119, 731, 1086, 1441, 1512, 1626, 1756, 1969
AfiI CCNNNNNNNGG 2 cut(s) 1558, 1939
AflII CTTAAG 1 cut(s) 1165
AflIII ACRYGT 1 cut(s) 1627
AgeI ACCGGT 1 cut(s) 993
AjiI CACGTC 1 cut(s) 1109
AjnI CCWGG 3 cut(s) 513, 693, 1287
Alw21I GWGCWC 2 cut(s) 303, 437
AlwI GGATC 3 cut(s) 194, 480, 2303
AoxI GGCC 3 cut(s) 223, 540, 2233
ApeKI GCWGC 4 cut(s) 319, 322, 452, 857
ApoI RAATTY 4 cut(s) 238, 1200, 1804, 2086
ArsI GACNNNNNNTTYG 2 cut(s) 868, 900
AseI ATTAAT 1 cut(s) 2022
AsiGI ACCGGT 1 cut(s) 993
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 223, 906, 1402
AsuHPI GGTGA 5 cut(s) 209, 592, 1182, 1401, 2141
AsuNHI GCTAGC 1 cut(s) 1313
AvaII GGWCC 2 cut(s) 906, 1402
AxyI CCTNAGG 1 cut(s) 2130
BaeGI GKGCMC 1 cut(s) 1546
BanI GGYRCC 2 cut(s) 1291, 1543
BbrPI CACGTG 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 303, 437
BbvI GCAGC 4 cut(s) 306, 309, 439, 844
BccI CCATC 4 cut(s) 140, 577, 791, 1050
BciT130I CCWGG 3 cut(s) 515, 695, 1289
BclI TGATCA 3 cut(s) 397, 1384, 1813
BfaI CTAG 5 cut(s) 438, 456, 816, 1314, 2153
BfmI CTRYAG 1 cut(s) 1444
BfrI CTTAAG 1 cut(s) 1165
BglII AGATCT 1 cut(s) 349
BisI GCNGC 4 cut(s) 320, 323, 453, 858
BlsI GCNGC 4 cut(s) 321, 324, 454, 859
BmcAI AGTACT 1 cut(s) 1756
Bme1390I CCNGG 3 cut(s) 515, 695, 1289
Bme18I GGWCC 2 cut(s) 906, 1402
BmgBI CACGTC 1 cut(s) 1109
BmgT120I GGNCC 3 cut(s) 223, 906, 1402
BmiI GGNNCC 6 cut(s) 224, 639, 992, 1293, 1545, 1674
BmrFI CCNGG 3 cut(s) 515, 695, 1289
BmrI ACTGGG 1 cut(s) 1712
BmsI GCATC 7 cut(s) 577, 837, 954, 1138, 1571, 2277, 2373
BmtI GCTAGC 1 cut(s) 1317
BmuI ACTGGG 1 cut(s) 1712
BpmI CTGGAG 1 cut(s) 1281
BpuEI CTTGAG 3 cut(s) 338, 2059, 2298
BsaAI YACGTR 3 cut(s) 407, 770, 1514
BsaBI GATNNNNATC 2 cut(s) 591, 1383
BsaHI GRCGYC 1 cut(s) 1303
BsaJI CCNNGG 2 cut(s) 986, 1573
BsaWI WCCGGW 1 cut(s) 993
BsaXI ACNNNNNCTCC 4 cut(s) 1724, 1754, 1934, 1964
Bsc4I CCNNNNNNNGG 2 cut(s) 1558, 1939
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 5 cut(s) 932, 1264, 1405, 1707, 1786
Bse21I CCTNAGG 1 cut(s) 2130
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 2 cut(s) 591, 1383
BseBI CCWGG 3 cut(s) 515, 695, 1289
BseDI CCNNGG 2 cut(s) 986, 1573
BseGI GGATG 6 cut(s) 113, 592, 969, 1562, 2124, 2388
BseJI GATNNNNATC 2 cut(s) 591, 1383
BseLI CCNNNNNNNGG 2 cut(s) 1558, 1939
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 1287, 1473, 2121
BseNI ACTGG 5 cut(s) 932, 1264, 1405, 1707, 1786
BseRI GAGGAG 3 cut(s) 479, 1748, 2316
BseSI GKGCMC 1 cut(s) 1546
BseXI GCAGC 4 cut(s) 306, 309, 439, 844
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 3 cut(s) 225, 542, 2235
BshNI GGYRCC 2 cut(s) 1291, 1543
BshTI ACCGGT 1 cut(s) 993
BsiHKAI GWGCWC 2 cut(s) 303, 437
BsiSI CCGG 1 cut(s) 994
BslI CCNNNNNNNGG 2 cut(s) 1558, 1939
BsmI GAATGC 1 cut(s) 1228
BsnI GGCC 3 cut(s) 225, 542, 2235
Bsp1286I GDGCHC 3 cut(s) 303, 437, 1546
Bsp1407I TGTACA 2 cut(s) 1084, 1624
Bsp19I CCATGG 1 cut(s) 986
BspACI CCGC 5 cut(s) 37, 286, 505, 1460, 1993
BspANI GGCC 3 cut(s) 225, 542, 2235
BspCNI CTCAG 3 cut(s) 1288, 1474, 2122
BspHI TCATGA 2 cut(s) 231, 2295
BspLI GGNNCC 6 cut(s) 224, 639, 992, 1293, 1545, 1674
BspOI GCTAGC 1 cut(s) 1317
BspPI GGATC 3 cut(s) 194, 480, 2303
BspQI GCTCTTC 1 cut(s) 425
BspT107I GGYRCC 2 cut(s) 1291, 1543
BspTI CTTAAG 1 cut(s) 1165
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 993
BsrGI TGTACA 2 cut(s) 1084, 1624
BsrI ACTGG 5 cut(s) 932, 1264, 1405, 1707, 1786
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 2 cut(s) 986, 1573
BssNI GRCGYC 1 cut(s) 1303
BssT1I CCWWGG 2 cut(s) 986, 1573
Bst2UI CCWGG 3 cut(s) 515, 695, 1289
Bst4CI ACNGT 6 cut(s) 906, 1117, 1334, 1677, 1950, 2199
Bst6I CTCTTC 2 cut(s) 425, 1501
BstACI GRCGYC 1 cut(s) 1303
BstAFI CTTAAG 1 cut(s) 1165
BstAPI GCANNNNNTGC 2 cut(s) 1223, 1886
BstAUI TGTACA 2 cut(s) 1084, 1624
BstBAI YACGTR 3 cut(s) 407, 770, 1514
BstC8I GCNNGC 8 cut(s) 41, 501, 505, 1215, 1315, 1348, 1983, 2158
BstDEI CTNAG 5 cut(s) 93, 1296, 1482, 2130, 2404
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 6 cut(s) 113, 592, 969, 1562, 2124, 2388
BstMWI GCNNNNNNNGC 3 cut(s) 1223, 1886, 2392
BstNI CCWGG 3 cut(s) 515, 695, 1289
BstNSI RCATGY 2 cut(s) 307, 1631
BstSCI CCNGG 3 cut(s) 513, 693, 1287
BstSFI CTRYAG 1 cut(s) 1444
BstSLI GKGCMC 1 cut(s) 1546
BstV1I GCAGC 4 cut(s) 306, 309, 439, 844
BstX2I RGATCY 3 cut(s) 349, 485, 2308
BstXI CCANNNNNNTGG 1 cut(s) 1076
BstYI RGATCY 3 cut(s) 349, 485, 2308
Bsu36I CCTNAGG 1 cut(s) 2130
BsuRI GGCC 3 cut(s) 225, 542, 2235
BtgI CCRYGG 1 cut(s) 986
BtgZI GCGATG 1 cut(s) 1595
BtrI CACGTC 1 cut(s) 1109
BtsCI GGATG 6 cut(s) 113, 592, 969, 1562, 2124, 2388
BtsIMutI CAGTG 5 cut(s) 1113, 1257, 1646, 1700, 2319
Cac8I GCNNGC 8 cut(s) 41, 501, 505, 1215, 1315, 1348, 1983, 2158
CciI TCATGA 2 cut(s) 231, 2295
Cfr10I RCCGGY 1 cut(s) 993
Cfr13I GGNCC 3 cut(s) 223, 906, 1402
CseI GACGC 1 cut(s) 1292
CsiI ACCWGGT 1 cut(s) 513
Csp6I GTAC 8 cut(s) 118, 730, 1085, 1440, 1511, 1625, 1755, 1968
CspAI ACCGGT 1 cut(s) 993
CspCI CAANNNNNGTGG 2 cut(s) 1934, 1969
CviQI GTAC 8 cut(s) 118, 730, 1085, 1440, 1511, 1625, 1755, 1968
DdeI CTNAG 5 cut(s) 93, 1296, 1482, 2130, 2404
DraI TTTAAA 1 cut(s) 1197
DraIII CACNNNGTG 2 cut(s) 1117, 1939
Eam1104I CTCTTC 2 cut(s) 425, 1501
EarI CTCTTC 2 cut(s) 425, 1501
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 986, 1573
Eco32I GATATC 2 cut(s) 705, 893
Eco47I GGWCC 2 cut(s) 906, 1402
Eco57I CTGAAG 1 cut(s) 1162
Eco72I CACGTG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 2130
EcoRII CCWGG 3 cut(s) 513, 693, 1287
EcoRV GATATC 2 cut(s) 705, 893
EcoT14I CCWWGG 2 cut(s) 986, 1573
ErhI CCWWGG 2 cut(s) 986, 1573
FauI CCCGC 1 cut(s) 512
FbaI TGATCA 3 cut(s) 397, 1384, 1813
Fnu4HI GCNGC 4 cut(s) 320, 323, 453, 858
FokI GGATG 6 cut(s) 120, 599, 976, 1549, 2111, 2395
Fsp4HI GCNGC 4 cut(s) 320, 323, 453, 858
FspBI CTAG 5 cut(s) 438, 456, 816, 1314, 2153
GluI GCNGC 4 cut(s) 320, 323, 453, 858
GsuI CTGGAG 1 cut(s) 1281
HaeIII GGCC 3 cut(s) 225, 542, 2235
HapII CCGG 1 cut(s) 994
HgaI GACGC 1 cut(s) 1292
Hin1I GRCGYC 1 cut(s) 1303
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 2348
HinfI GANTC 7 cut(s) 23, 871, 1051, 1170, 2225, 2269, 2360
HpaII CCGG 1 cut(s) 994
HphI GGTGA 5 cut(s) 209, 592, 1182, 1401, 2141
Hpy166II GTNNAC 6 cut(s) 120, 340, 1085, 1120, 1625, 1990
Hpy188I TCNGA 9 cut(s) 266, 532, 1030, 1389, 1798, 1851, 1926, 2224, 2359
Hpy188III TCNNGA 7 cut(s) 232, 563, 950, 1180, 1376, 1400, 2296
Hpy8I GTNNAC 6 cut(s) 120, 340, 1085, 1120, 1625, 1990
Hpy99I CGWCG 1 cut(s) 1334
HpyAV CCTTC 8 cut(s) 56, 78, 119, 729, 930, 1755, 2079, 2324
HpyCH4III ACNGT 6 cut(s) 906, 1117, 1334, 1677, 1950, 2199
HpyCH4IV ACGT 5 cut(s) 406, 769, 1108, 1513, 1897
HpyF10VI GCNNNNNNNGC 3 cut(s) 1223, 1886, 2392
HpyF3I CTNAG 5 cut(s) 93, 1296, 1482, 2130, 2404
HpySE526I ACGT 5 cut(s) 406, 769, 1108, 1513, 1897
Hsp92I GRCGYC 1 cut(s) 1303
Ksp22I TGATCA 3 cut(s) 397, 1384, 1813
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 1942, 2185, 2303
Lsp1109I GCAGC 4 cut(s) 306, 309, 439, 844
LweI GCATC 7 cut(s) 577, 837, 954, 1138, 1571, 2277, 2373
MabI ACCWGGT 1 cut(s) 513
MaeI CTAG 5 cut(s) 438, 456, 816, 1314, 2153
MaeII ACGT 5 cut(s) 406, 769, 1108, 1513, 1897
MaeIII GTNAC 6 cut(s) 163, 288, 517, 599, 1109, 1407
MfeI CAATTG 3 cut(s) 246, 1491, 1809
MflI RGATCY 3 cut(s) 349, 485, 2308
MhlI GDGCHC 3 cut(s) 303, 437, 1546
MlyI GAGTC 2 cut(s) 1060, 2369
MmeI TCCRAC 1 cut(s) 1053
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 7 cut(s) 711, 1140, 1166, 1196, 1568, 1685, 2022
MslI CAYNNNNRTG 3 cut(s) 1074, 1080, 2253
MspCI CTTAAG 1 cut(s) 1165
MspI CCGG 1 cut(s) 994
MspR9I CCNGG 3 cut(s) 515, 695, 1289
MunI CAATTG 3 cut(s) 246, 1491, 1809
Mva1269I GAATGC 1 cut(s) 1228
MvaI CCWGG 3 cut(s) 515, 695, 1289
MwoI GCNNNNNNNGC 3 cut(s) 1223, 1886, 2392
NcoI CCATGG 1 cut(s) 986
NheI GCTAGC 1 cut(s) 1313
NlaIV GGNNCC 6 cut(s) 224, 639, 992, 1293, 1545, 1674
NmeAIII GCCGAG 1 cut(s) 1494
NmuCI GTSAC 3 cut(s) 288, 1109, 1407
NspI RCATGY 2 cut(s) 307, 1631
PagI TCATGA 2 cut(s) 231, 2295
PciI ACATGT 1 cut(s) 1627
PciSI GCTCTTC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 1 cut(s) 1228
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 5 cut(s) 23, 871, 1170, 2225, 2269
PflMI CCANNNNNTGG 1 cut(s) 1939
PinAI ACCGGT 1 cut(s) 993
PkrI GCNGC 4 cut(s) 321, 324, 454, 859
PleI GAGTC 2 cut(s) 1059, 2368
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
PpsI GAGTC 2 cut(s) 1059, 2368
Ppu21I YACGTR 3 cut(s) 407, 770, 1514
PscI ACATGT 1 cut(s) 1627
PshBI ATTAAT 1 cut(s) 2022
Psp1406I AACGTT 1 cut(s) 1897
Psp6I CCWGG 3 cut(s) 513, 693, 1287
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 3 cut(s) 513, 693, 1287
PspN4I GGNNCC 6 cut(s) 224, 639, 992, 1293, 1545, 1674
PspPI GGNCC 3 cut(s) 223, 906, 1402
PsuI RGATCY 3 cut(s) 349, 485, 2308
RsaI GTAC 8 cut(s) 119, 731, 1086, 1441, 1512, 1626, 1756, 1969
RsaNI GTAC 8 cut(s) 118, 730, 1085, 1440, 1511, 1625, 1755, 1968
RseI CAYNNNNRTG 3 cut(s) 1074, 1080, 2253
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 7 cut(s) 711, 1140, 1166, 1196, 1568, 1685, 2022
SatI GCNGC 4 cut(s) 320, 323, 453, 858
Sau96I GGNCC 3 cut(s) 223, 906, 1402
ScaI AGTACT 1 cut(s) 1756
SchI GAGTC 2 cut(s) 1060, 2369
ScrFI CCNGG 3 cut(s) 515, 695, 1289
SduI GDGCHC 3 cut(s) 303, 437, 1546
SexAI ACCWGGT 1 cut(s) 513
SfaNI GCATC 7 cut(s) 577, 837, 954, 1138, 1571, 2277, 2373
SfcI CTRYAG 1 cut(s) 1444
SinI GGWCC 2 cut(s) 906, 1402
SmiMI CAYNNNNRTG 3 cut(s) 1074, 1080, 2253
SmlI CTYRAG 4 cut(s) 353, 1165, 2074, 2313
SmoI CTYRAG 4 cut(s) 353, 1165, 2074, 2313
SsiI CCGC 5 cut(s) 37, 286, 505, 1460, 1993
SspI AATATT 1 cut(s) 1419
SspMI CTAG 5 cut(s) 438, 456, 816, 1314, 2153
StyD4I CCNGG 3 cut(s) 513, 693, 1287
StyI CCWWGG 2 cut(s) 986, 1573
TaaI ACNGT 6 cut(s) 906, 1117, 1334, 1677, 1950, 2199
TaiI ACGT 5 cut(s) 409, 772, 1111, 1516, 1900
TaqI TCGA 7 cut(s) 18, 112, 375, 958, 1054, 1230, 1724
TatI WGTACW 6 cut(s) 117, 729, 1084, 1624, 1754, 1967
TfiI GAWTC 5 cut(s) 23, 871, 1170, 2225, 2269
Tru1I TTAA 7 cut(s) 711, 1140, 1166, 1196, 1568, 1685, 2022
Tru9I TTAA 7 cut(s) 711, 1140, 1166, 1196, 1568, 1685, 2022
TscAI CASTG 5 cut(s) 1120, 1264, 1653, 1707, 2326
TseFI GTSAC 3 cut(s) 288, 1109, 1407
TseI GCWGC 4 cut(s) 319, 322, 452, 857
Tsp45I GTSAC 3 cut(s) 288, 1109, 1407
TspDTI ATGAA 8 cut(s) 638, 729, 767, 934, 1107, 1263, 1350, 1598
TspRI CASTG 5 cut(s) 1120, 1264, 1653, 1707, 2326
Van91I CCANNNNNTGG 1 cut(s) 1939
Vha464I CTTAAG 1 cut(s) 1165
VpaK11BI GGWCC 2 cut(s) 906, 1402
VspI ATTAAT 1 cut(s) 2022
XapI RAATTY 4 cut(s) 238, 1200, 1804, 2086
XceI RCATGY 2 cut(s) 307, 1631
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 5 cut(s) 438, 456, 816, 1314, 2153
ZrmI AGTACT 1 cut(s) 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.