Rh3AG047300

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000126
Physical Location & Seq
Forward (+)
3329687 .. 3335085
5399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG047300.1

Sequence Viewer

Length: 2196 bp
ATGGAGACTGCGGCGGCGGAGTTGGAACAAAAATCGGAGGCGAAACAGAGGAGCCTAGGCGCGGCGTTTGAGTCGTTGAGTTCGCAAGCTTCGTCGATTCTGAAGTTTACGGTGGAGTGGAAGGAGCTGGAGGACCATTTCGAGTCGACCCGGAGGGTGCTACGGACCCGGTTCGAGGAGGTAAGGGATCGCGTGAAGGAGGTGGCGGAGATGGAGGCGAAGGAGGAGAGGCTGAAGATGGAGGTGAAGGGGAGGGAGAAGGAGTTGGGGGAAATCGAGGAGGTGGTGGAGCGGAGGAGGAGGGAGGTGGAGGAAAGTGAGAGTTATTTGGAGTCTGTGAGGGCTTTGATTGTGGAGAATGATGAGGAGCTTAGGGTTAGGGAGGAGAGGTATGATAAAGTTGAGAGATTGATTAGGGAGAAGGAGAGGGAGGTGGAGGAGATAGAGAAGCATGTGAGAGAGAGGTCTAGGAAGTTTAGTTGGCTGGACAAGAGGATAGAGGTGAAGAAGAAGGAGGTTGAGAGGAAGGAGAGGCAGTTGAGAGAGGTTAGGGATTTGGAGGAGAAGAAATTGAGTGGTGTTAGGGGGTTGATTGAGGACAAGAGGAAGGAAGTTGAGTTGAAGGAAGATGAGATGATGATGGTGAAAAGGAGGGTTGAGGATTGTGATAGGGAAATGAAGGAGAAAGAGGAGAGGCTGAGTTTGATTGAGAAATCGAAAGACGAAATGACTGGTGCGGTGGATTTGAAAGGGAAAGAATTCTGTTTGCTGAAGAAATCAATGGAGGAGTGGTGCTGTAAGATTGAAGTGAAGGAGAGGGAGCTTGAAGGATGGGTTGATAAGTTGGAATCGAAAGAGAAGGAAGTTGAATTGAAGGTTGAGGAGCTTGATTTGATTCGTAGCAAGTTCCTCGATGAGGTTCAGTTCAAAGAAAAGCATTTGGATTCGCTTGAAAAATCGTTACTAGAATGGGAGGAGGATCTGCATTCCCTCCAGAAGTCGGTACAAGAATGTTCCCGGGGAAGTGAGGTCATTAGGGATGGAAGAGGATTGCAGCAGTTCATGGACGAGCATCTTAAGAGAATTGATTCCATGGGTACTGAACTGTCAGCGATTCTTAAAGAGTCTTCAGACCCGGGGAAGTTGGTTTTGGATGCAATGCAGGGGTTTTATGCTGACAACAGGGAGTTAGATTTTGAATTGAGAGTTAGAAGAAGAAGTTGTTGTCTTTTGTTAGAGGAGTTGAGGAGAATCTCTCCACAAATGAATCCTCAAGTGAAAGAGGAGGCAACGAAACTGGCTGCTAATTGGAAAGCCAAGATGACAGTGGCGAGTGACAATGAGTTGGAGGTTTTGGGATTTTTGTGGCTTGTTGCTGCTTATGACTTAACTTCTATCTATGATGCGAAGGAGCTTAAAAGGCTTCTTTCTAAAGTTTCGCGGGGTGAACAAGCAGCTCAAATAGGCCTGGCCCTTGGTATTCCGGCACCTGGAAGCCGCAACATTTGTTCCCCTGTCAAAATTGAGGAACCAGAATCTTCTACGGCCAACAATGCAGCAACTATTTCTTCTCCTAATCCTCAAACAAGTGCCACCACAGATGCAAGGGATTCACGGGTGTGTATAAATGAGACTTTGAATTGGAATGTAGATACAATACAGAATGAAATAGTGGCTGCTGTTCAATCGGCATCGGACCCAGAAGAACTTGTGTTGAAGATGATGCAAAATTCTCTTGGCAAATACTGGACAAGCACAGAAGGTAGTCTGAAAAAGCGTGTCATGTCGTGTAATATTTCTCTATTAAAGATGCTAATGAGCGTCTCACCACAAGTTGGATCTCACGTAAAAGAAGATGCCAAAAAACTAGGACTCCAGTGGAAAGCAAAAATTAGAGCTGATGTTGAACATTTGGAACATCTTTTGGAGATTGTGGGGTTTTTGCTATTTATTGTTGCATATGGATTGCTTCCTACACTAAATGGAGATGAGATTGTAAAGTTTCTTGAGAAGCTTTCTCAATATAAAGAAGTTGTAGAATCATGTCAGATGCATGGTTTTCTAGATAAGATCCTTGGTAAGCTTCTCAGAAATTTACTATTACAGTGTTGTGTTTGCATTACACTGACCATTATATTCATTTATATCTTATTCTGTTATTTCTGCTTTCTGCAATGCACAATGTTTTCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

731

Amino Acids

84.86

Weight (kDa)

5.36

Isoelectric Point (pI)

54.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 347 - 493 2.5e-32 Frigida-like protein
Frigida PF07899 549 - 691 3.7e-20 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1486
AccB7I CCANNNNNTGG 1 cut(s) 1835
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 146
AccII CGCG 3 cut(s) 62, 192, 1441
AciI CCGC 9 cut(s) 11, 14, 17, 62, 206, 292, 737, 1441, 1498
AclWI GGATC 4 cut(s) 195, 987, 1846, 2065
AcoI YGGCCR 1 cut(s) 1545
AcsI RAATTY 3 cut(s) 758, 1729, 2092
AcuI CTGAAG 4 cut(s) 122, 254, 791, 1113
AfaI GTAC 2 cut(s) 1005, 1099
AfiI CCNNNNNNNGG 6 cut(s) 61, 175, 916, 1000, 1490, 1835
AflII CTTAAG 1 cut(s) 1076
AjnI CCWGG 2 cut(s) 1467, 1489
AjuI GAANNNNNNNTTGG 2 cut(s) 1133, 1165
AleI CACNNNNGTG 1 cut(s) 1618
Alw26I GTCTC 2 cut(s) 1625, 1828
AlwI GGATC 4 cut(s) 195, 987, 1846, 2065
Ama87I CYCGRG 2 cut(s) 1017, 1135
AoxI GGCC 3 cut(s) 1465, 1470, 1545
ApeKI GCWGC 6 cut(s) 1054, 1301, 1376, 1454, 1556, 1676
ApoI RAATTY 3 cut(s) 758, 1729, 2092
Asp700I GAANNNNTTC 2 cut(s) 758, 1087
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 133, 165, 1471, 1696
AsuC2I CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
AsuHPI GGTGA 5 cut(s) 256, 514, 655, 1457, 1818
AvaI CYCGRG 2 cut(s) 1017, 1135
AvaII GGWCC 3 cut(s) 133, 165, 1696
AvrII CCTAGG 1 cut(s) 55
BanI GGYRCC 1 cut(s) 1486
BbsI GAAGAC 1 cut(s) 1119
BbvI GCAGC 6 cut(s) 1066, 1288, 1363, 1466, 1568, 1663
BccI CCATC 5 cut(s) 205, 232, 634, 825, 1034
BceAI ACGGC 1 cut(s) 1560
BcgI CGANNNNNNTGC 2 cut(s) 892, 926
BciT130I CCWGG 2 cut(s) 1469, 1491
BcnI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
BcoDI GTCTC 2 cut(s) 1625, 1828
BfaI CTAG 6 cut(s) 56, 468, 965, 1868, 2063, 2194
BfrI CTTAAG 1 cut(s) 1076
BlnI CCTAGG 1 cut(s) 55
Bme1390I CCNGG 8 cut(s) 151, 169, 1018, 1019, 1136, 1137, 1469, 1491
Bme18I GGWCC 3 cut(s) 133, 165, 1696
BmeT110I CYCGRG 2 cut(s) 1017, 1135
BmgT120I GGNCC 4 cut(s) 133, 165, 1471, 1696
BmiI GGNNCC 5 cut(s) 53, 167, 1488, 1530, 1698
BmrFI CCNGG 8 cut(s) 151, 169, 1018, 1019, 1136, 1137, 1469, 1491
BmsI GCATC 9 cut(s) 1081, 1144, 1393, 1591, 1700, 1713, 1800, 1846, 2040
BpiI GAAGAC 1 cut(s) 1119
BplI GAGNNNNNCTC 2 cut(s) 1240, 1272
BpmI CTGGAG 3 cut(s) 149, 977, 1859
Bpu10I CCTNAGC 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 1257, 2027
BpuMI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
BsaAI YACGTR 1 cut(s) 1846
BsaJI CCNNGG 8 cut(s) 55, 1017, 1018, 1092, 1135, 1136, 1474, 2074
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 175, 916, 1000, 1490, 1835
Bse1I ACTGG 4 cut(s) 736, 1302, 1751, 1876
Bse3DI GCAATG 2 cut(s) 1164, 2180
BseBI CCWGG 2 cut(s) 1469, 1491
BseDI CCNNGG 8 cut(s) 55, 1017, 1018, 1092, 1135, 1136, 1474, 2074
BseGI GGATG 3 cut(s) 836, 1045, 1159
BseLI CCNNNNNNNGG 6 cut(s) 61, 175, 916, 1000, 1490, 1835
BseMI GCAATG 2 cut(s) 1164, 2180
BseMII CTCAG 2 cut(s) 689, 2101
BseNI ACTGG 4 cut(s) 736, 1302, 1751, 1876
BseXI GCAGC 6 cut(s) 1066, 1288, 1363, 1466, 1568, 1663
Bsh1236I CGCG 3 cut(s) 62, 192, 1441
BshFI GGCC 3 cut(s) 1467, 1472, 1547
BshNI GGYRCC 1 cut(s) 1486
BsiHKCI CYCGRG 2 cut(s) 1017, 1135
BsiSI CCGG 5 cut(s) 151, 169, 1018, 1136, 1484
BslI CCNNNNNNNGG 6 cut(s) 61, 175, 916, 1000, 1490, 1835
BsmAI GTCTC 2 cut(s) 1625, 1828
BsmBI CGTCTC 1 cut(s) 1828
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 3 cut(s) 1467, 1472, 1547
BsoBI CYCGRG 2 cut(s) 1017, 1135
Bsp143I GATC 4 cut(s) 187, 979, 1838, 2070
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 9 cut(s) 11, 14, 17, 62, 206, 292, 737, 1441, 1498
BspANI GGCC 3 cut(s) 1467, 1472, 1547
BspCNI CTCAG 2 cut(s) 690, 2100
BspFNI CGCG 3 cut(s) 62, 192, 1441
BspLI GGNNCC 5 cut(s) 53, 167, 1488, 1530, 1698
BspPI GGATC 4 cut(s) 195, 987, 1846, 2065
BspT107I GGYRCC 1 cut(s) 1486
BspTI CTTAAG 1 cut(s) 1076
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 1164, 2180
BsrI ACTGG 4 cut(s) 736, 1302, 1751, 1876
BssECI CCNNGG 8 cut(s) 55, 1017, 1018, 1092, 1135, 1136, 1474, 2074
BssMI GATC 4 cut(s) 187, 979, 1838, 2070
BssT1I CCWWGG 4 cut(s) 55, 1092, 1474, 2074
Bst2UI CCWGG 2 cut(s) 1469, 1491
Bst4CI ACNGT 4 cut(s) 112, 1107, 1327, 2106
Bst6I CTCTTC 1 cut(s) 1039
BstAFI CTTAAG 1 cut(s) 1076
BstBAI YACGTR 1 cut(s) 1846
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 371, 698, 2087
BstDSI CCRYGG 1 cut(s) 1092
BstENI CCTNNNNNAGG 1 cut(s) 914
BstF5I GGATG 3 cut(s) 836, 1045, 1159
BstFNI CGCG 3 cut(s) 62, 192, 1441
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 190, 982, 1841, 2073
BstMAI GTCTC 2 cut(s) 1625, 1828
BstMBI GATC 4 cut(s) 187, 979, 1838, 2070
BstMWI GCNNNNNNNGC 2 cut(s) 1420, 1553
BstNI CCWGG 2 cut(s) 1469, 1491
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 8 cut(s) 149, 167, 1016, 1017, 1134, 1135, 1467, 1489
BstUI CGCG 3 cut(s) 62, 192, 1441
BstV1I GCAGC 6 cut(s) 1066, 1288, 1363, 1466, 1568, 1663
BstV2I GAAGAC 1 cut(s) 1119
BstX2I RGATCY 3 cut(s) 979, 1838, 2070
BstYI RGATCY 3 cut(s) 979, 1838, 2070
BsuRI GGCC 3 cut(s) 1467, 1472, 1547
BtgI CCRYGG 1 cut(s) 1092
BtsCI GGATG 3 cut(s) 836, 1045, 1159
BtsIMutI CAGTG 4 cut(s) 1332, 1883, 2111, 2123
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 133, 165, 1471, 1696
Cfr9I CCCGGG 2 cut(s) 1017, 1135
CseI GACGC 1 cut(s) 1810
Csp6I GTAC 2 cut(s) 1004, 1098
CviAII CATG 6 cut(s) 452, 1063, 1093, 1783, 2043, 2054
CviQI GTAC 2 cut(s) 1004, 1098
DdeI CTNAG 3 cut(s) 371, 698, 2087
DpnI GATC 4 cut(s) 189, 981, 1840, 2072
DpnII GATC 4 cut(s) 187, 979, 1838, 2070
EaeI YGGCCR 1 cut(s) 1545
Eam1104I CTCTTC 1 cut(s) 1039
EarI CTCTTC 1 cut(s) 1039
EciI GGCGGA 2 cut(s) 32, 221
Eco130I CCWWGG 4 cut(s) 55, 1092, 1474, 2074
Eco147I AGGCCT 1 cut(s) 1467
Eco47I GGWCC 3 cut(s) 133, 165, 1696
Eco57I CTGAAG 4 cut(s) 122, 254, 791, 1113
Eco88I CYCGRG 2 cut(s) 1017, 1135
EcoNI CCTNNNNNAGG 1 cut(s) 914
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 2 cut(s) 1467, 1489
EcoT14I CCWWGG 4 cut(s) 55, 1092, 1474, 2074
EcoT22I ATGCAT 1 cut(s) 2055
ErhI CCWWGG 4 cut(s) 55, 1092, 1474, 2074
Esp3I CGTCTC 1 cut(s) 1828
FaeI CATG 6 cut(s) 455, 1066, 1096, 1786, 2046, 2057
FatI CATG 6 cut(s) 451, 1062, 1092, 1782, 2042, 2053
FauI CCCGC 1 cut(s) 1434
FauNDI CATATG 1 cut(s) 1960
FblI GTMKAC 1 cut(s) 146
FokI GGATG 3 cut(s) 843, 1052, 1166
FspBI CTAG 6 cut(s) 56, 468, 965, 1868, 2063, 2194
GlaI GCGC 1 cut(s) 61
GsuI CTGGAG 3 cut(s) 149, 977, 1859
HaeIII GGCC 3 cut(s) 1467, 1472, 1547
HapII CCGG 5 cut(s) 151, 169, 1018, 1136, 1484
HgaI GACGC 1 cut(s) 1810
HhaI GCGC 1 cut(s) 62
Hin1II CATG 6 cut(s) 455, 1066, 1096, 1786, 2046, 2057
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 3 cut(s) 87, 2012, 2081
HpaII CCGG 5 cut(s) 151, 169, 1018, 1136, 1484
HphI GGTGA 5 cut(s) 256, 514, 655, 1457, 1818
Hpy166II GTNNAC 3 cut(s) 108, 147, 1448
Hpy188I TCNGA 7 cut(s) 37, 102, 1132, 1696, 1770, 2049, 2090
Hpy188III TCNNGA 3 cut(s) 994, 2006, 2063
Hpy8I GTNNAC 3 cut(s) 108, 147, 1448
Hpy99I CGWCG 1 cut(s) 97
HpyCH4III ACNGT 4 cut(s) 112, 1107, 1327, 2106
HpyCH4IV ACGT 1 cut(s) 1845
HpyF10VI GCNNNNNNNGC 2 cut(s) 1420, 1553
HpyF3I CTNAG 3 cut(s) 371, 698, 2087
HpySE526I ACGT 1 cut(s) 1845
Hsp92II CATG 6 cut(s) 455, 1066, 1096, 1786, 2046, 2057
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 187, 979, 1838, 2070
LmnI GCTCC 7 cut(s) 51, 124, 289, 367, 820, 883, 1411
Lsp1109I GCAGC 6 cut(s) 1066, 1288, 1363, 1466, 1568, 1663
LweI GCATC 9 cut(s) 1081, 1144, 1393, 1591, 1700, 1713, 1800, 1846, 2040
MaeI CTAG 6 cut(s) 56, 468, 965, 1868, 2063, 2194
MaeII ACGT 1 cut(s) 1845
MaeIII GTNAC 2 cut(s) 960, 1334
MalI GATC 4 cut(s) 189, 981, 1840, 2072
MbiI CCGCTC 1 cut(s) 292
MboI GATC 4 cut(s) 187, 979, 1838, 2070
MflI RGATCY 3 cut(s) 979, 1838, 2070
MlyI GAGTC 5 cut(s) 80, 152, 341, 1133, 1866
MmeI TCCRAC 3 cut(s) 825, 1326, 1816
Mph1103I ATGCAT 1 cut(s) 2055
MroXI GAANNNNTTC 2 cut(s) 758, 1087
MseI TTAA 5 cut(s) 1077, 1119, 1388, 1416, 1805
MslI CAYNNNNRTG 1 cut(s) 1618
MspCI CTTAAG 1 cut(s) 1076
MspI CCGG 5 cut(s) 151, 169, 1018, 1136, 1484
MspR9I CCNGG 8 cut(s) 151, 169, 1018, 1019, 1136, 1137, 1469, 1491
Mva1269I GAATGC 1 cut(s) 985
MvaI CCWGG 2 cut(s) 1469, 1491
MvnI CGCG 3 cut(s) 62, 192, 1441
MwoI GCNNNNNNNGC 2 cut(s) 1420, 1553
NciI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
NcoI CCATGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 1960
NdeII GATC 4 cut(s) 187, 979, 1838, 2070
NlaIII CATG 6 cut(s) 455, 1066, 1096, 1786, 2046, 2057
NlaIV GGNNCC 5 cut(s) 53, 167, 1488, 1530, 1698
NmuCI GTSAC 1 cut(s) 1334
NsiI ATGCAT 1 cut(s) 2055
NspI RCATGY 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 1618
PceI AGGCCT 1 cut(s) 1467
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 2 cut(s) 758, 1087
PflMI CCANNNNNTGG 1 cut(s) 1835
PleI GAGTC 5 cut(s) 79, 151, 340, 1132, 1866
PpsI GAGTC 5 cut(s) 79, 151, 340, 1132, 1866
Ppu21I YACGTR 1 cut(s) 1846
Psp6I CCWGG 2 cut(s) 1467, 1489
PspGI CCWGG 2 cut(s) 1467, 1489
PspN4I GGNNCC 5 cut(s) 53, 167, 1488, 1530, 1698
PspPI GGNCC 4 cut(s) 133, 165, 1471, 1696
PsuI RGATCY 3 cut(s) 979, 1838, 2070
RsaI GTAC 2 cut(s) 1005, 1099
RsaNI GTAC 2 cut(s) 1004, 1098
RseI CAYNNNNRTG 1 cut(s) 1618
SalI GTCGAC 1 cut(s) 145
SaqAI TTAA 5 cut(s) 1077, 1119, 1388, 1416, 1805
Sau3AI GATC 4 cut(s) 187, 979, 1838, 2070
Sau96I GGNCC 4 cut(s) 133, 165, 1471, 1696
SchI GAGTC 5 cut(s) 80, 152, 341, 1133, 1866
ScrFI CCNGG 8 cut(s) 151, 169, 1018, 1019, 1136, 1137, 1469, 1491
SfaNI GCATC 9 cut(s) 1081, 1144, 1393, 1591, 1700, 1713, 1800, 1846, 2040
SinI GGWCC 3 cut(s) 133, 165, 1696
SmaI CCCGGG 2 cut(s) 1019, 1137
SmiMI CAYNNNNRTG 1 cut(s) 1618
SmlI CTYRAG 3 cut(s) 1076, 1272, 2006
SmoI CTYRAG 3 cut(s) 1076, 1272, 2006
SseBI AGGCCT 1 cut(s) 1467
SsiI CCGC 9 cut(s) 11, 14, 17, 62, 206, 292, 737, 1441, 1498
SspI AATATT 1 cut(s) 1795
SspMI CTAG 6 cut(s) 56, 468, 965, 1868, 2063, 2194
StuI AGGCCT 1 cut(s) 1467
StyD4I CCNGG 8 cut(s) 149, 167, 1016, 1017, 1134, 1135, 1467, 1489
StyI CCWWGG 4 cut(s) 55, 1092, 1474, 2074
TaaI ACNGT 4 cut(s) 112, 1107, 1327, 2106
TaiI ACGT 1 cut(s) 1848
TaqI TCGA 8 cut(s) 95, 141, 146, 174, 276, 716, 851, 912
TauI GCSGC 4 cut(s) 14, 17, 65, 1500
Tru1I TTAA 5 cut(s) 1077, 1119, 1388, 1416, 1805
Tru9I TTAA 5 cut(s) 1077, 1119, 1388, 1416, 1805
TscAI CASTG 4 cut(s) 1332, 1883, 2111, 2130
TseFI GTSAC 1 cut(s) 1334
TseI GCWGC 6 cut(s) 1054, 1301, 1376, 1454, 1556, 1676
Tsp45I GTSAC 1 cut(s) 1334
TspDTI ATGAA 5 cut(s) 692, 1051, 1280, 1680, 2128
TspGWI ACGGA 1 cut(s) 178
TspMI CCCGGG 2 cut(s) 1017, 1135
TspRI CASTG 4 cut(s) 1332, 1883, 2111, 2130
Van91I CCANNNNNTGG 1 cut(s) 1835
Vha464I CTTAAG 1 cut(s) 1076
VpaK11BI GGWCC 3 cut(s) 133, 165, 1696
XagI CCTNNNNNAGG 1 cut(s) 914
XapI RAATTY 3 cut(s) 758, 1729, 2092
XbaI TCTAGA 1 cut(s) 2062
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 1324
XmaI CCCGGG 2 cut(s) 1017, 1135
XmaJI CCTAGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 2 cut(s) 758, 1087
XspI CTAG 6 cut(s) 56, 468, 965, 1868, 2063, 2194
Zsp2I ATGCAT 1 cut(s) 2055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.