Rorug02G0644100

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Forward (+)
75505892 .. 75510921
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0644100.1

Sequence Viewer

Length: 3372 bp
ATGGCCATCCTTGCCAAGGGGTACATTCAAATCTTAGCGGAGTCAACCGCACTCATTCGCTTCGATAGAGCTCCACCGGCACGGTCAAGGTACTCTTACGCTGTTTTCCGGTACTCAGTTGTTACACTTAATGGCTCAGATGCATGCAAAGAAAGAATGTGTTTCATTCACTGTCAGCTTGATGGCCAAACTCTGAGTCCATGTCCAGCTAAGGCCATAGTATTCAGAAACTTGACAGTCAACAGTGACCATGAATTTCTTGTCAGTGTCACAACTTCGGATGGACAAAGAAACTCATCAGCTCATTCTTGGTTCATTGATACAATACCACCAACTGCAACAATTTTTAGCGGAAAGAATTATACAAGCACTGAAAGAATAGCCATTGATATCACTTTCAGTGAAGCTTGCACCGGGAAGGGTGGCTTTAGGTGTGTAAACTCATCAAGCTGTGATGTTATAATACATGGTCCAGCCCATGTACATGCATCTTCCTTGCGCATGATTAAACCTGGCATTAGTTACAGTCTCGATGTAATTCTCTCCTTTACAAGTATGAATGGTCGCGTTGTCATCAGAATGGCAGATAAATTTTGTACAGATCAGGCTGGAAATAGCTTCACAAGGACAAATGGTTCCACTATAATCATTCACTTTGATAGAAGGCCAGTGCTAGCAGATTTGTGGACCTCTGTTCCTGCCTATGAGTTAGTGATGAATGGAGTCCCAAGAACTGTCCTTGCAACTAACAAATTGGAGGATGTGCAAATATTTTTGGGCTTCAGCATTCCCATTATAAACACAACAGAGCAGGTCCTAAATGCAATGATTGTCAATTCGGGTAAATTAATACCTATTCATCGCAGAAATCAAGGAAGCCGCGAGTTTAATTTCCAAATCAGGAATATATCTAGAACTGAAATCATTGTGATTGAATTACAAGCTGGACTATTAATCGGCAGGACAGGCACTCCTGTCTCACCGGTTCCCTCAATTACATTCCTTTATGATTCTGTGGAGACCGGTGTAGGGCTGAGTACTAGTTCTCCAAATGTTACTAAGGACCACAGCATAAATGTAGTAGTTGAGTTTACAAAGCCGGTTTTTGGCTTTGAGGCCTCGATGGTAAATGTGGTTGGGGGTAGAATAACAAGGTTTAGGGAACTTTCAAGAGCTCTGTACTCCTTGAATGTACAAGCAATCACTGAGCATATGGTGTCAATTTCTGTTCCTGCAGGGAAGGTATATGATATATCAGAAAATCTTAACATGGCATCTAACCAACTTGAAGTGAAACACTACTCAACCCCTGCAATATCAATGGCATTGCAGTCATTTGTTAGTGCTGGTATATTAGCAACATCACTAGCAGCTGCTATTCTCTCAATTTCAACTGCACATCTTGGAGCAGTGGGAATTGCTTCTGAGAGAATCAATGTTGTTGCCTCCGATTCCTCAATGAATCTACATGGTCTGGTCGGACACCTTCAAGTTTTTGTCCTCTCAGACTGGCTCTCAGTTAATCAACCAATTGAATATTTCGAGACAACCAAAGGTCTCTGGTGGCTCATACCTCGTCAAAAGCTTCCATGGAAGAAGGATAGTGGTTCAGTTTTGCACCACCATGTCTACTTGGCTGAAGAGAATCTTCAGAGGAAATCTATTGCCTCATCTGTAGGAGGGTCTTCACATAAAGGAGTTAACGTTCAAGTTGACTCGTATCTAGCCAATTCTTCATATATGTGCAATGAAGTACCAGTTCCCATCGAGATGGGTCCCAAGTCTGGTTGGCTTCTTGGGCAGCATAACATGCATATGATTCCTTATGGATTACCCCTTCATTCTAATGAATATTTCATGTATTTCTTGAGAGGAGAGCCATTGTCTGCTAGCAATGTCATCAAGGGAATGGAGAATTACCTAGGGTGGGAAGACCTACTGATGAACTTGTTTTGGCTTGGTATTGGAGGAGGCAGTTTAGTCATCATCCATTTATTGATATTACTTTTCCTAAGGTGGAGAACTGGAACACCAGCTCATGGTTTACTGTCAGTTCCCAGATTCGAGCTCTTTCTTCTAATTCTCATGCTACCTTGTATCTCTCAGTCCTCGACTTTTGTGATAAAAGGTGGTACAACAGGAGGAATCATTACTGGAGCTTTGTTGCTGGCTATCCCAGCAGCTCTTATAATATCAGTGTGCCTTTTTAATTTAATTGCAATCTTCTCTGCCAGTTATGTTCAGTACAAGGAAGTCAAGCATGTAGCTAGAAAAGAACCGTGGTCTACAAGGATTTTGTATTATTTTACAGGGAGACCTAGTGCTGGAAAGTGGTTTTATAAGGAAGGGATTCCTTCATCTTTCCTTCCACGTTTCGGGATTCTCTTTGAAAGTTTGAAGGGTCCTCCATTATTTGTTTTTGTTGATCAAAATGAACCAAACAGCATATCCAAGTGGACCGGAAGTGGCAATAGTGGTATTGGGAGGATGCGACCAGTCAGCTTGGATGGCAGCATTGAAGAAATTAAGATTCCTATATCGAAAAGGGTCTTGGGATGTGCTAGATCTTCCTACATTATTGTTGATCTTTCAAGACGGGTCTGCTTGGGGATCATATGTGGAGCTTACTCATCAAGGAAATCAAACCAAAGCCTCTTTGCACTGACCATTACGCTGGTACAGTTCATTTATCTATTTACTATCAAACCATACATCAGCAGGGGAGTCCATGTGGTGGAAAGTATTTCTCTACTGTGTGAGGTTGGCATCTTTGCTCTATTTATCAGTATTAATGGCTCAAATCCAGTCAAAGCGAGAAATGCAGGGTTCTTAATGCTAGGTCTTCTCTTCCTTACCTTTGTTACCCAAATTATCAATGAGTGGTATGCTTTGATGAAGTTCATATTAAGATTCTCTCAGCCTCAAAAGAATTCGTTCAAACTCGGTTTAAAGTTTGCTGCTAAGGGCCTTATCCTCCCATTTCTTCCAAAGAAGCAATGGCCAAGAGTCATACCTGCATCATCCCATCCAAAAACAGGTCTACCTCCAGTCCTTCATCCAGGTCCAGATACAAAATCTGGAAGGAGAGATATGAGAGCACCAGGCGGTAACACTATTAGCGCTATGACTGCAACTGTAGTCCCTGTACTCAGTCCTGGATCACCTGGCCCTAATGTTCTACAAATGACAGCAGGTTCCTCTACTCCCGAGACTACACTAGGTACGCAGAGAGCAGTGGAAGCAAAACAGCTAAAGGGACTGAAATTACAGCCGAAAAGTGATCTGAAGAAACTGAGGGAGTTGGCAAGGGCAAGTTTTTCAGGGGATTCAAATTTCGAGGAAGCTAGCACCAGCTATGGTCCTAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

1123

Amino Acids

123.1

Weight (kDa)

9.48

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 461, 797, 2189, 2340
Acc16I TGCGCA 1 cut(s) 500
Acc36I ACCTGC 3 cut(s) 802, 3022, 3182
AccB7I CCANNNNNTGG 2 cut(s) 2039, 2734
AccI GTMKAC 3 cut(s) 1629, 2285, 3040
AccII CGCG 2 cut(s) 567, 882
AciI CCGC 5 cut(s) 38, 48, 351, 880, 3105
AclI AACGTT 1 cut(s) 1704
AclWI GGATC 2 cut(s) 2618, 3166
AcoI YGGCCR 3 cut(s) 3, 184, 2999
AcsI RAATTY 4 cut(s) 254, 590, 2929, 3331
AcuI CTGAAG 4 cut(s) 766, 1634, 1659, 3305
AfeI AGCGCT 1 cut(s) 3121
AgeI ACCGGT 2 cut(s) 982, 1022
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 5 cut(s) 511, 3058, 3100, 3154, 3163
AjuI GAANNNNNNNTTGG 2 cut(s) 2534, 2566
AloI GAACNNNNNNTCC 4 cut(s) 619, 651, 1689, 1721
Alw21I GWGCWC 4 cut(s) 73, 1177, 2070, 3100
Alw26I GTCTC 7 cut(s) 533, 982, 1013, 1538, 1562, 2308, 3203
AlwI GGATC 2 cut(s) 2618, 3166
Ama87I CYCGRG 1 cut(s) 3206
Aor51HI AGCGCT 1 cut(s) 3121
AoxI GGCC 8 cut(s) 3, 184, 213, 665, 1116, 2965, 2999, 3166
ApeKI GCWGC 6 cut(s) 1370, 1373, 1801, 2180, 2511, 2957
ApoI RAATTY 4 cut(s) 254, 590, 2929, 3331
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AseI ATTAAT 3 cut(s) 848, 953, 2790
AsiGI ACCGGT 2 cut(s) 982, 1022
Asp700I GAANNNNTTC 3 cut(s) 1420, 2349, 2933
AspA2I CCTAGG 1 cut(s) 1921
AspLEI GCGC 2 cut(s) 501, 3122
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 972, 3153
AsuNHI GCTAGC 3 cut(s) 673, 1889, 3344
AvaI CYCGRG 1 cut(s) 3206
AvaII GGWCC 9 cut(s) 470, 687, 814, 1063, 1775, 2402, 2457, 3062, 3359
AvrII CCTAGG 1 cut(s) 1921
AxyI CCTNAGG 1 cut(s) 2012
BalI TGGCCA 3 cut(s) 5, 186, 3001
BanII GRGCYC 3 cut(s) 73, 1177, 2070
BbsI GAAGAC 3 cut(s) 1677, 1938, 2834
Bbv12I GWGCWC 4 cut(s) 73, 1177, 2070, 3100
BbvI GCAGC 6 cut(s) 1360, 1382, 1813, 2192, 2523, 2944
BccI CCATC 8 cut(s) 14, 176, 275, 1117, 1765, 1772, 2501, 3033
BciT130I CCWGG 5 cut(s) 513, 3060, 3102, 3156, 3165
BclI TGATCA 1 cut(s) 2425
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 7 cut(s) 533, 982, 1013, 1538, 1562, 2308, 3203
BcuI ACTAGT 1 cut(s) 1040
BfmI CTRYAG 3 cut(s) 1233, 1674, 3135
BfoI RGCGCY 1 cut(s) 3123
BfuAI ACCTGC 3 cut(s) 802, 3022, 3182
BglII AGATCT 1 cut(s) 2564
BisI GCNGC 7 cut(s) 880, 1371, 1374, 1802, 2181, 2512, 2958
BlnI CCTAGG 1 cut(s) 1921
BlsI GCNGC 7 cut(s) 881, 1372, 1375, 1803, 2182, 2513, 2959
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 6 cut(s) 415, 513, 3060, 3102, 3156, 3165
Bme18I GGWCC 9 cut(s) 470, 687, 814, 1063, 1775, 2402, 2457, 3062, 3359
BmeT110I CYCGRG 1 cut(s) 3206
BmiI GGNNCC 6 cut(s) 637, 987, 1776, 1777, 2403, 3196
BmrFI CCNGG 6 cut(s) 415, 513, 3060, 3102, 3156, 3165
BmsI GCATC 6 cut(s) 130, 497, 1283, 2478, 2775, 3026
BmtI GCTAGC 3 cut(s) 677, 1893, 3348
BpiI GAAGAC 3 cut(s) 1677, 1938, 2834
BpmI CTGGAG 2 cut(s) 2175, 3030
Bpu10I CCTNAGC 2 cut(s) 210, 2961
BpuEI CTTGAG 1 cut(s) 1888
BpuMI CCSGG 1 cut(s) 415
BsaI GGTCTC 3 cut(s) 1013, 1562, 2308
BsaJI CCNNGG 4 cut(s) 15, 1589, 1921, 2279
BsaWI WCCGGW 4 cut(s) 108, 982, 1022, 2459
Bse118I RCCGGY 4 cut(s) 76, 982, 1022, 1099
Bse1I ACTGG 9 cut(s) 668, 1514, 1757, 2029, 2158, 2232, 2495, 2804, 3047
Bse21I CCTNAGG 1 cut(s) 2012
Bse3DI GCAATG 5 cut(s) 831, 1325, 1753, 1900, 3002
BseBI CCWGG 5 cut(s) 513, 3060, 3102, 3156, 3165
BseDI CCNNGG 4 cut(s) 15, 1589, 1921, 2279
BseMI GCAATG 5 cut(s) 831, 1325, 1753, 1900, 3002
BseNI ACTGG 9 cut(s) 668, 1514, 1757, 2029, 2158, 2232, 2495, 2804, 3047
BseRI GAGGAG 2 cut(s) 1887, 1983
BseXI GCAGC 6 cut(s) 1360, 1382, 1813, 2192, 2523, 2944
BseYI CCCAGC 1 cut(s) 2176
BsgI GTGCAG 1 cut(s) 1380
Bsh1236I CGCG 2 cut(s) 567, 882
BshFI GGCC 8 cut(s) 5, 186, 215, 667, 1118, 2967, 3001, 3168
BshTI ACCGGT 2 cut(s) 982, 1022
BsiHKAI GWGCWC 4 cut(s) 73, 1177, 2070, 3100
BsiHKCI CYCGRG 1 cut(s) 3206
BsiSI CCGG 7 cut(s) 77, 109, 414, 983, 1023, 1100, 2460
BslFI GGGAC 4 cut(s) 710, 1761, 3125, 3270
BsmAI GTCTC 7 cut(s) 533, 982, 1013, 1538, 1562, 2308, 3203
BsmFI GGGAC 4 cut(s) 710, 1761, 3125, 3270
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 8 cut(s) 5, 186, 215, 667, 1118, 2967, 3001, 3168
Bso31I GGTCTC 3 cut(s) 1013, 1562, 2308
BsoBI CYCGRG 1 cut(s) 3206
Bsp1286I GDGCHC 4 cut(s) 73, 1177, 2070, 3100
Bsp1407I TGTACA 3 cut(s) 481, 596, 1192
Bsp143I GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
Bsp19I CCATGG 1 cut(s) 1589
BspACI CCGC 5 cut(s) 38, 48, 351, 880, 3105
BspANI GGCC 8 cut(s) 5, 186, 215, 667, 1118, 2967, 3001, 3168
BspFNI CGCG 2 cut(s) 567, 882
BspLI GGNNCC 6 cut(s) 637, 987, 1776, 1777, 2403, 3196
BspMAI CTGCAG 1 cut(s) 1237
BspMI ACCTGC 3 cut(s) 802, 3022, 3182
BspOI GCTAGC 3 cut(s) 677, 1893, 3348
BspPI GGATC 2 cut(s) 2618, 3166
BspTNI GGTCTC 3 cut(s) 1013, 1562, 2308
BsrDI GCAATG 5 cut(s) 831, 1325, 1753, 1900, 3002
BsrFI RCCGGY 4 cut(s) 76, 982, 1022, 1099
BsrGI TGTACA 3 cut(s) 481, 596, 1192
BsrI ACTGG 9 cut(s) 668, 1514, 1757, 2029, 2158, 2232, 2495, 2804, 3047
BssAI RCCGGY 4 cut(s) 76, 982, 1022, 1099
BssECI CCNNGG 4 cut(s) 15, 1589, 1921, 2279
BssMI GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
BssT1I CCWWGG 3 cut(s) 15, 1589, 1921
Bst2UI CCWGG 5 cut(s) 513, 3060, 3102, 3156, 3165
Bst6I CTCTTC 2 cut(s) 1635, 2852
BstAPI GCANNNNNTGC 1 cut(s) 1810
BstAUI TGTACA 3 cut(s) 481, 596, 1192
BstC8I GCNNGC 6 cut(s) 145, 409, 675, 1891, 2169, 3346
BstDSI CCRYGG 2 cut(s) 1589, 2279
BstENI CCTNNNNNAGG 1 cut(s) 14
BstFNI CGCG 2 cut(s) 567, 882
BstH2I RGCGCY 1 cut(s) 3123
BstHHI GCGC 2 cut(s) 501, 3122
BstKTI GATC 7 cut(s) 604, 2428, 2567, 2587, 2613, 3161, 3283
BstMAI GTCTC 7 cut(s) 533, 982, 1013, 1538, 1562, 2308, 3203
BstMBI GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
BstNI CCWGG 5 cut(s) 513, 3060, 3102, 3156, 3165
BstNSI RCATGY 4 cut(s) 147, 488, 1813, 2264
BstSCI CCNGG 6 cut(s) 413, 511, 3058, 3100, 3154, 3163
BstSFI CTRYAG 3 cut(s) 1233, 1674, 3135
BstUI CGCG 2 cut(s) 567, 882
BstV1I GCAGC 6 cut(s) 1360, 1382, 1813, 2192, 2523, 2944
BstV2I GAAGAC 3 cut(s) 1677, 1938, 2834
BstX2I RGATCY 1 cut(s) 2564
BstXI CCANNNNNNTGG 2 cut(s) 1771, 2674
BstYI RGATCY 1 cut(s) 2564
Bsu36I CCTNAGG 1 cut(s) 2012
BsuRI GGCC 8 cut(s) 5, 186, 215, 667, 1118, 2967, 3001, 3168
BtgI CCRYGG 2 cut(s) 1589, 2279
BtgZI GCGATG 1 cut(s) 845
BtsI GCAGTG 2 cut(s) 1416, 3240
BveI ACCTGC 3 cut(s) 802, 3022, 3182
Cac8I GCNNGC 6 cut(s) 145, 409, 675, 1891, 2169, 3346
CfoI GCGC 2 cut(s) 501, 3122
Cfr10I RCCGGY 4 cut(s) 76, 982, 1022, 1099
CspAI ACCGGT 2 cut(s) 982, 1022
DpnI GATC 7 cut(s) 603, 2427, 2566, 2586, 2612, 3160, 3282
DpnII GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
DraI TTTAAA 1 cut(s) 2949
EaeI YGGCCR 3 cut(s) 3, 184, 2999
Eam1104I CTCTTC 2 cut(s) 1635, 2852
EarI CTCTTC 2 cut(s) 1635, 2852
Ecl136II GAGCTC 3 cut(s) 71, 1175, 2068
Eco130I CCWWGG 3 cut(s) 15, 1589, 1921
Eco147I AGGCCT 1 cut(s) 1118
Eco24I GRGCYC 3 cut(s) 73, 1177, 2070
Eco31I GGTCTC 3 cut(s) 1013, 1562, 2308
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 9 cut(s) 470, 687, 814, 1063, 1775, 2402, 2457, 3062, 3359
Eco47III AGCGCT 1 cut(s) 3121
Eco53kI GAGCTC 3 cut(s) 71, 1175, 2068
Eco57I CTGAAG 4 cut(s) 766, 1634, 1659, 3305
Eco81I CCTNAGG 1 cut(s) 2012
Eco88I CYCGRG 1 cut(s) 3206
EcoICRI GAGCTC 3 cut(s) 71, 1175, 2068
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 4 cut(s) 814, 1775, 2402, 2965
EcoRI GAATTC 1 cut(s) 2929
EcoRII CCWGG 5 cut(s) 511, 3058, 3100, 3154, 3163
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 15, 1589, 1921
EcoT22I ATGCAT 3 cut(s) 145, 490, 1815
EcoT38I GRGCYC 3 cut(s) 73, 1177, 2070
ErhI CCWWGG 3 cut(s) 15, 1589, 1921
FalI AAGNNNNNCTT 6 cut(s) 79, 111, 410, 442, 1632, 1664
FaqI GGGAC 4 cut(s) 710, 1761, 3125, 3270
FauNDI CATATG 3 cut(s) 1212, 1815, 2615
FbaI TGATCA 1 cut(s) 2425
FblI GTMKAC 3 cut(s) 1629, 2285, 3040
Fnu4HI GCNGC 7 cut(s) 880, 1371, 1374, 1802, 2181, 2512, 2958
FokI GGATG 9 cut(s) 293, 773, 1973, 2500, 2519, 2568, 3007, 3012, 3042
FriOI GRGCYC 3 cut(s) 73, 1177, 2070
Fsp4HI GCNGC 7 cut(s) 880, 1371, 1374, 1802, 2181, 2512, 2958
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 2 cut(s) 500, 3121
GluI GCNGC 7 cut(s) 880, 1371, 1374, 1802, 2181, 2512, 2958
GsaI CCCAGC 1 cut(s) 2180
GsuI CTGGAG 2 cut(s) 2175, 3030
HaeII RGCGCY 1 cut(s) 3123
HaeIII GGCC 8 cut(s) 5, 186, 215, 667, 1118, 2967, 3001, 3168
HapII CCGG 7 cut(s) 77, 109, 414, 983, 1023, 1100, 2460
HhaI GCGC 2 cut(s) 501, 3122
Hin6I GCGC 2 cut(s) 499, 3120
HinP1I GCGC 2 cut(s) 499, 3120
HincII GTYRAC 4 cut(s) 45, 241, 1702, 1714
HindII GTYRAC 4 cut(s) 45, 241, 1702, 1714
HindIII AAGCTT 2 cut(s) 405, 1583
HpaI GTTAAC 1 cut(s) 1702
HpaII CCGG 7 cut(s) 77, 109, 414, 983, 1023, 1100, 2460
HphI GGTGA 2 cut(s) 972, 3153
HpyCH4IV ACGT 2 cut(s) 1704, 2371
HpySE526I ACGT 2 cut(s) 1704, 2371
HspAI GCGC 2 cut(s) 499, 3120
KflI GGGWCCC 1 cut(s) 1775
Ksp22I TGATCA 1 cut(s) 2425
KspAI GTTAAC 1 cut(s) 1702
Kzo9I GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
LmnI GCTCC 4 cut(s) 76, 1406, 2156, 2621
Lsp1109I GCAGC 6 cut(s) 1360, 1382, 1813, 2192, 2523, 2944
LweI GCATC 6 cut(s) 130, 497, 1283, 2478, 2775, 3026
MaeII ACGT 2 cut(s) 1704, 2371
MaeIII GTNAC 7 cut(s) 121, 245, 268, 521, 1054, 2860, 3107
MalI GATC 7 cut(s) 603, 2427, 2566, 2586, 2612, 3160, 3282
MboI GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
MfeI CAATTG 1 cut(s) 1530
MflI RGATCY 1 cut(s) 2564
MhlI GDGCHC 4 cut(s) 73, 1177, 2070, 3100
MlsI TGGCCA 3 cut(s) 5, 186, 3001
MluNI TGGCCA 3 cut(s) 5, 186, 3001
MlyI GAGTC 6 cut(s) 50, 205, 732, 1709, 2733, 3015
MmeI TCCRAC 1 cut(s) 1459
Mox20I TGGCCA 3 cut(s) 5, 186, 3001
Mph1103I ATGCAT 3 cut(s) 145, 490, 1815
MroXI GAANNNNTTC 3 cut(s) 1420, 2349, 2933
MscI TGGCCA 3 cut(s) 5, 186, 3001
MslI CAYNNNNRTG 7 cut(s) 483, 578, 1623, 1741, 1769, 1814, 1845
Msp20I TGGCCA 3 cut(s) 5, 186, 3001
MspA1I CMGCKG 1 cut(s) 1373
MspI CCGG 7 cut(s) 77, 109, 414, 983, 1023, 1100, 2460
MspR9I CCNGG 6 cut(s) 415, 513, 3060, 3102, 3156, 3165
MunI CAATTG 1 cut(s) 1530
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 5 cut(s) 513, 3060, 3102, 3156, 3165
MvnI CGCG 2 cut(s) 567, 882
NciI CCSGG 1 cut(s) 415
NcoI CCATGG 1 cut(s) 1589
NdeI CATATG 3 cut(s) 1212, 1815, 2615
NdeII GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
NheI GCTAGC 3 cut(s) 673, 1889, 3344
NlaIV GGNNCC 6 cut(s) 637, 987, 1776, 1777, 2403, 3196
NmuCI GTSAC 2 cut(s) 245, 268
NsbI TGCGCA 1 cut(s) 500
NsiI ATGCAT 3 cut(s) 145, 490, 1815
NspI RCATGY 4 cut(s) 147, 488, 1813, 2264
PaeI GCATGC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 1118
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 3 cut(s) 1420, 2349, 2933
PflMI CCANNNNNTGG 2 cut(s) 2039, 2734
PfoI TCCNGGA 1 cut(s) 3154
PinAI ACCGGT 2 cut(s) 982, 1022
PkrI GCNGC 7 cut(s) 881, 1372, 1375, 1803, 2182, 2513, 2959
PleI GAGTC 6 cut(s) 49, 204, 731, 1709, 2732, 3014
PpsI GAGTC 6 cut(s) 49, 204, 731, 1709, 2732, 3014
PpuMI RGGWCCY 3 cut(s) 814, 1775, 2402
PshBI ATTAAT 3 cut(s) 848, 953, 2790
PsiI TTATAA 4 cut(s) 461, 797, 2189, 2340
Psp124BI GAGCTC 3 cut(s) 73, 1177, 2070
Psp1406I AACGTT 1 cut(s) 1704
Psp5II RGGWCCY 3 cut(s) 814, 1775, 2402
Psp6I CCWGG 5 cut(s) 511, 3058, 3100, 3154, 3163
PspFI CCCAGC 1 cut(s) 2176
PspGI CCWGG 5 cut(s) 511, 3058, 3100, 3154, 3163
PspN4I GGNNCC 6 cut(s) 637, 987, 1776, 1777, 2403, 3196
PspPPI RGGWCCY 3 cut(s) 814, 1775, 2402
PstI CTGCAG 1 cut(s) 1237
PsuI RGATCY 1 cut(s) 2564
PvuII CAGCTG 1 cut(s) 1373
RseI CAYNNNNRTG 7 cut(s) 483, 578, 1623, 1741, 1769, 1814, 1845
SacI GAGCTC 3 cut(s) 73, 1177, 2070
SatI GCNGC 7 cut(s) 880, 1371, 1374, 1802, 2181, 2512, 2958
Sau3AI GATC 7 cut(s) 601, 2425, 2564, 2584, 2610, 3158, 3280
SbfI CCTGCAGG 1 cut(s) 1237
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 6 cut(s) 50, 205, 732, 1709, 2733, 3015
ScrFI CCNGG 6 cut(s) 415, 513, 3060, 3102, 3156, 3165
SdaI CCTGCAGG 1 cut(s) 1237
SduI GDGCHC 4 cut(s) 73, 1177, 2070, 3100
SfaNI GCATC 6 cut(s) 130, 497, 1283, 2478, 2775, 3026
SfcI CTRYAG 3 cut(s) 1233, 1674, 3135
SinI GGWCC 9 cut(s) 470, 687, 814, 1063, 1775, 2402, 2457, 3062, 3359
SmiMI CAYNNNNRTG 7 cut(s) 483, 578, 1623, 1741, 1769, 1814, 1845
SmlI CTYRAG 1 cut(s) 1867
SmoI CTYRAG 1 cut(s) 1867
SpeI ACTAGT 1 cut(s) 1040
SphI GCATGC 1 cut(s) 147
Sse8387I CCTGCAGG 1 cut(s) 1237
SseBI AGGCCT 1 cut(s) 1118
SsiI CCGC 5 cut(s) 38, 48, 351, 880, 3105
SspI AATATT 3 cut(s) 771, 1538, 1853
SstI GAGCTC 3 cut(s) 73, 1177, 2070
StuI AGGCCT 1 cut(s) 1118
StyD4I CCNGG 6 cut(s) 413, 511, 3058, 3100, 3154, 3163
StyI CCWWGG 3 cut(s) 15, 1589, 1921
TaiI ACGT 2 cut(s) 1707, 2374
TaqI TCGA 9 cut(s) 63, 531, 1121, 1542, 1767, 2064, 2111, 2540, 3336
TatI WGTACW 7 cut(s) 481, 596, 1037, 1179, 1192, 2244, 3145
TauI GCSGC 1 cut(s) 882
TseFI GTSAC 2 cut(s) 245, 268
TseI GCWGC 6 cut(s) 1370, 1373, 1801, 2180, 2511, 2957
Tsp45I GTSAC 2 cut(s) 245, 268
Van91I CCANNNNNTGG 2 cut(s) 2039, 2734
VpaK11BI GGWCC 9 cut(s) 470, 687, 814, 1063, 1775, 2402, 2457, 3062, 3359
VspI ATTAAT 3 cut(s) 848, 953, 2790
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 4 cut(s) 254, 590, 2929, 3331
XbaI TCTAGA 1 cut(s) 911
XceI RCATGY 4 cut(s) 147, 488, 1813, 2264
XcmI CCANNNNNNNNNTGG 1 cut(s) 2994
XmaJI CCTAGG 1 cut(s) 1921
XmiI GTMKAC 3 cut(s) 1629, 2285, 3040
XmnI GAANNNNTTC 3 cut(s) 1420, 2349, 2933
ZrmI AGTACT 1 cut(s) 1039
Zsp2I ATGCAT 3 cut(s) 145, 490, 1815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.