Rmu_sc0013935.1_g000001

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013935.1
OG0000126
Physical Location & Seq
Forward (+)
1 .. 847
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013935.1_g000001.1.cds

Sequence Viewer

Length: 248 bp
aaccgagctgagggaaaatatggagaatgatccagacccggaaatggaagagttggaggcgaggcagaggagcttaggcagagccttcgactccttgaatgtccaagcttcttcggtcctgttgttcaccgcgaagtggaaggagctcgaggaccattttgagtcgtcccggaaggagctccggacccggttggcggagctggaggagcgcgtgaagctagtcgcggaggtggaggcgagggcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

82

Amino Acids

9.57

Weight (kDa)

4.75

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 132, 211, 225
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 4 cut(s) 130, 195, 225, 243
AclWI GGATC 1 cut(s) 24
AfiI CCNNNNNNNGG 4 cut(s) 10, 44, 136, 194
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 7 cut(s) 8, 73, 108, 146, 179, 200, 218
AluI AGCT 7 cut(s) 8, 73, 108, 146, 179, 200, 218
Alw21I GWGCWC 2 cut(s) 148, 181
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 181
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 116, 152, 184
AsuC2I CCSGG 3 cut(s) 39, 170, 188
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 3 cut(s) 116, 152, 184
BanII GRGCYC 2 cut(s) 148, 181
Bbv12I GWGCWC 2 cut(s) 148, 181
BbvCI CCTCAGC 1 cut(s) 9
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcnI CCSGG 3 cut(s) 39, 170, 188
BfaI CTAG 1 cut(s) 219
Bme1390I CCNGG 3 cut(s) 39, 170, 188
Bme18I GGWCC 3 cut(s) 116, 152, 184
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 3 cut(s) 116, 152, 184
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 39, 170, 188
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 2 cut(s) 9, 74
BpuMI CCSGG 3 cut(s) 39, 170, 188
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 10, 44, 136, 194
BseAI TCCGGA 1 cut(s) 181
BseLI CCNNNNNNNGG 4 cut(s) 10, 44, 136, 194
BseRI GAGGAG 2 cut(s) 83, 219
Bsh1236I CGCG 3 cut(s) 132, 211, 225
BsiHKAI GWGCWC 2 cut(s) 148, 181
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 39, 170, 182, 188
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 10, 44, 136, 194
BsmFI GGGAC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 148, 181
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 4 cut(s) 130, 195, 225, 243
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 3 cut(s) 132, 211, 225
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 1 cut(s) 24
BssMI GATC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 9, 74
BstFNI CGCG 3 cut(s) 132, 211, 225
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 206, 215
BstSCI CCNGG 3 cut(s) 37, 168, 186
BstUI CGCG 3 cut(s) 132, 211, 225
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 3 cut(s) 116, 152, 184
CviJI RGCY 8 cut(s) 8, 73, 84, 108, 146, 179, 200, 218
CviKI_1 RGCY 8 cut(s) 8, 73, 84, 108, 146, 179, 200, 218
DdeI CTNAG 2 cut(s) 9, 74
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 146, 179
Eco24I GRGCYC 2 cut(s) 148, 181
Eco47I GGWCC 3 cut(s) 116, 152, 184
Eco53kI GAGCTC 2 cut(s) 146, 179
Eco88I CYCGRG 1 cut(s) 147
EcoICRI GAGCTC 2 cut(s) 146, 179
EcoT38I GRGCYC 2 cut(s) 148, 181
FaiI YATR 1 cut(s) 21
FaqI GGGAC 1 cut(s) 152
FriOI GRGCYC 2 cut(s) 148, 181
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 222
HapII CCGG 4 cut(s) 39, 170, 182, 188
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 2 cut(s) 90, 162
HpaII CCGG 4 cut(s) 39, 170, 182, 188
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 33, 182
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 95, 134, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 215
HpyF3I CTNAG 2 cut(s) 9, 74
HspAI GCGC 1 cut(s) 209
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 6 cut(s) 70, 143, 176, 184, 197, 206
LpnPI CCDG 7 cut(s) 46, 52, 132, 183, 186, 195, 201
MaeI CTAG 1 cut(s) 219
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 2 cut(s) 60, 103
MhlI GDGCHC 2 cut(s) 148, 181
MlyI GAGTC 2 cut(s) 84, 171
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 9 cut(s) 4, 50, 55, 61, 143, 197, 221, 227, 232
MroI TCCGGA 1 cut(s) 181
MspI CCGG 4 cut(s) 39, 170, 182, 188
MspR9I CCNGG 3 cut(s) 39, 170, 188
MvnI CGCG 3 cut(s) 132, 211, 225
MwoI GCNNNNNNNGC 2 cut(s) 206, 215
NciI CCSGG 3 cut(s) 39, 170, 188
NdeII GATC 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 186
PaeR7I CTCGAG 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 168
PleI GAGTC 2 cut(s) 84, 170
PpsI GAGTC 2 cut(s) 84, 170
Psp124BI GAGCTC 2 cut(s) 148, 181
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 3 cut(s) 116, 152, 184
PspXI VCTCGAGB 1 cut(s) 147
SacI GAGCTC 2 cut(s) 148, 181
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 3 cut(s) 116, 152, 184
SchI GAGTC 2 cut(s) 84, 171
ScrFI CCNGG 3 cut(s) 39, 170, 188
SduI GDGCHC 2 cut(s) 148, 181
SetI ASST 8 cut(s) 10, 75, 110, 148, 181, 202, 220, 232
Sfr274I CTCGAG 1 cut(s) 147
SinI GGWCC 3 cut(s) 116, 152, 184
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 4 cut(s) 130, 195, 225, 243
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 2 cut(s) 148, 181
StyD4I CCNGG 3 cut(s) 37, 168, 186
TaqI TCGA 2 cut(s) 88, 148
TaqII GACCGA 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 116, 152, 184
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.