FvH4_6g04431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000126
Physical Location & Seq
Forward (+)
2421685 .. 2426297
4613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04431.t4

Sequence Viewer

Length: 2715 bp
ATGATGACGGAGGAGCGGTTTGACCCGACCCGGAACCGGGTCCGGGCCGGGTTCCGGGAGCTGGGAAAGTTGGTGAAGCAGATGGAAGGTGTAGAGGTGAAGCTGAGGTGTGATTCTGAAGCGAAAGCGGTGGAGATTGAAGAAGGTAAGAAGAAACTGAGCTGTCTTGAGTTGAAATTTGAAGAGAAAAATAGAGAGCTTTGTGATAGAGAGAAGAGGATAGAGGAACTTGAGGGGAAGGAGGAAGATGTGAAGGTGAGAGAGGAGAGATTGAAGGGTTTACAGGAGTTGATTGTGAAATGTGATGATGAGGTGAGGCTGAAGAGGGTGAGGATTGATTTGTTACAGAAATCGATGATGGAGTGTTCGAATATATTGGAAGCTAGAGAGAGGAAGATCAGGGAGTGTAATGTGGGTTTCGATTTGCTTAAGAAGTCGATGGAGGAGTGGGGATGTAGAGTTGAGATGAAGGAGAGGGACGTGGAAGGGTTTGTGGTGAAGATGGAGTTGAAGGGGAAAGAAGTGGAGTCAAAAATTGAGGAGCTTGAGTTGATTGAGAAGAGGGTGAAGGATTGTGTTGGTGATGTTGAGTTGAGAGTAGGGCAGTCTGAAGAACTTGAGAAATCGATGCTGAAAGAGAGACAGCAGTTGGATGGAATGCAAGAGTCGGTGCGTGAGGGGGAAAGGAATTTGGATTCAGCTCGAAAGGCAGTGGAAGAGAGGGAGAAGGTTCTGGACTTGCTAGGTCGGAAACTTGAAAGGAAGGAGAAGGAACTTGAAAAGCAGGCCAATGAGGTTAAGTTGAAAGAGAGAGTAGTTAAATCGAGGTTTGAGGAACTTGATTCAAAGGACAAGAGAATGAATGAACTCCTCAATGATGTTCAATTGAAGGAAAAAGGCTTGGAATCATTTAAGGAATCATTACAAAAAGACAGAAAGCATTTGGATTTGCTCCAAGAGTCAACAGCAGAGCGTGAGAAGCAGTTGGATTCACTCCAAAGATCGGTGCAGGATCGTGAAAATAGTTTGCTTTTGTTTCAATCATCGGTACAAGAGCGTGAAAGAAATGTGGATTCACTATCCCATGGACTTCAAAGGAGAGAAAGGGAACTAGAAAAGCAGGCCAAAGAGCTTGAATCAAAGCAGAAACAGTTTGATTTGCAGAGGAAGGGTAAGCATTTGGAACCTAACCTTGCTGCTAGAGATGCCAATGTTGTTTCATCTACTAGTGATCAATCCCGGATCAACATGGATGGTAGAAGCTTACAGTTAGTCATGAATGAGCAAGTGGAAAAAATTGATTCCGCAGGTAGCCTAATATCAGATGTTCTACATGCATCATCAGACCCGGCGAAATTGGTTTTGGATGCAATGGAAGGGTTTTATCCGTCAGATCTTGATGTGGAAAACAGAGACCTTGATCATTTGAGGGTTGTAAGAAAGAGCTGTATTCTTTTGCTACAGCAGTTAAAGAGAATGTCACCAATAATTAATCCTCAGGTGAGAGAAGTAGCAGTGAAATTGGCAGCTGTTTGGGATGAGAAGATGGCAGATACCGCTGATGATGATGATAATAGTTGGGAGGCTTTGGGCTTTTTGCGGCTGATCACTACGTATGAATTGACAAGTAATTATCATTTGAGGGAGCTTCGAATGCTTCTTGATATGGTTTCTCAGCCAGAACAAGTTGCTGAGTTAAGTAGGGCACTTGGTATCACAGATAAGGCCCCTGTGACGAACGTCGTTTCTTCCATAGTCAAGTCTGAGCCATCAGAATCTTCACTGGCTCGAAATGTATCAATCCTTTCTCCTCCAAATAATAGTACACAGAATGAAAGGATTGTTTCACTTTCTTCCATTGCCAAGATTGAGAAAAACTTCTCGGTGGTTCTTCAATCATCATCAGACCCCGCAAAACTTGCGTTGGATATGATGCAACAGTCTTTTACGTATAACTGGAGTCATAGAGATGTTAGTTCCAAAGAAAGGGTTGTATCGAGTAATATTTCTCTACTGAAGAATCTAATGGGGCTCTCCATACATGTTGGACCTCATCTGAAAGAAAATGCAACAATTCTAGCATCCCAGTGGAGAGAACAGTTGATAGCTGATACTGAGGATTCATTGGAGAGTTTGGGATATTTGCTGTTTATAGCTATGTATGGATTGGTTCCAACCTTACCTGAAGATGAGATTATAATGCTTCTTAGAAGGGTTTCGCAGCATAGACGGTCTCTAGAATTATGTCAGACACATCCTTTCGCAGATTATGTCCCTGATTTTATACAGAAGCTTATTGAAAAGAAGCTACTGTTGGAGGCTGTTAAATCTATTTGTGCCTTCAAATTAAATGACAAGCTCCCCCCAGTGCCACTCTTAAGAGAATATGTGGAGGATGTAATGATGTCTGAAGTAATTTGCATGTCACAGATGACACCTGATGAAAAGGATAAGGCTGTGATTTGTATGATAGCTAAGCTAAGAGCTGCCATTCAGTGCATGAAAGATTACAACCTCGAGTCTGAATACTCGAAGACTGTTGAAATCCAAATAGTTCAGCTCGAAATGCTCAAGGAAAAATGGAGAAGTTTGGCGCCCAAAGTTGAACAAGAAGAGAGAAAAAGAAAGAACCCTTGTGCTAGCTCTTCTGCCCCAAAGTCACAACCAGGAAAAGTATCAAAAATCAAAATCATCTTCAGTGGTTCGAAACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

905

Amino Acids

104.13

Weight (kDa)

5.81

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 416 - 588 5.4e-32 Frigida-like protein
Frigida PF07899 649 - 800 8.5e-21 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2198
Acc36I ACCTGC 1 cut(s) 1298
AccB1I GGYRCC 1 cut(s) 2593
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 6 cut(s) 16, 128, 1305, 1557, 1600, 1911
AclWI GGATC 2 cut(s) 1020, 1250
AcsI RAATTY 2 cut(s) 176, 688
AcuI CTGAAG 7 cut(s) 138, 341, 630, 2036, 2205, 2430, 2680
AcyI GRCGYC 1 cut(s) 2594
AfaI GTAC 2 cut(s) 1050, 1825
AfiI CCNNNNNNNGG 7 cut(s) 36, 37, 43, 54, 61, 1003, 1986
AflII CTTAAG 2 cut(s) 428, 2377
AflIII ACRYGT 1 cut(s) 2041
AhlI ACTAGT 1 cut(s) 1226
AjiI CACGTC 1 cut(s) 481
AjnI CCWGG 1 cut(s) 2665
AjuI GAANNNNNNNTTGG 4 cut(s) 1346, 1378, 2297, 2329
Alw26I GTCTC 3 cut(s) 634, 1407, 2238
AlwI GGATC 2 cut(s) 1020, 1250
Ama87I CYCGRG 1 cut(s) 2516
AoxI GGCC 4 cut(s) 45, 786, 1122, 1725
ApeKI GCWGC 4 cut(s) 1196, 1526, 2221, 2486
ApoI RAATTY 2 cut(s) 176, 688
AseI ATTAAT 1 cut(s) 1491
Asp700I GAANNNNTTC 2 cut(s) 1877, 2215
AspLEI GCGC 1 cut(s) 2596
AspS9I GGNCC 4 cut(s) 40, 45, 1726, 2048
AsuC2I CCSGG 7 cut(s) 31, 38, 44, 49, 56, 1240, 1349
AsuII TTCGAA 3 cut(s) 368, 1651, 2705
AsuNHI GCTAGC 1 cut(s) 2639
AvaI CYCGRG 1 cut(s) 2516
AvaII GGWCC 2 cut(s) 40, 2048
AxyI CCTNAGG 1 cut(s) 1497
BaeGI GKGCMC 1 cut(s) 1708
BanI GGYRCC 1 cut(s) 2593
BanII GRGCYC 1 cut(s) 2034
BbsI GAAGAC 1 cut(s) 2540
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 4 cut(s) 1183, 1538, 2233, 2473
BccI CCATC 8 cut(s) 76, 352, 433, 496, 647, 1247, 1540, 1777
BciT130I CCWGG 1 cut(s) 2667
BclI TGATCA 3 cut(s) 1231, 1420, 1605
BcnI CCSGG 7 cut(s) 31, 38, 44, 49, 56, 1240, 1349
BcoDI GTCTC 3 cut(s) 634, 1407, 2238
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 8 cut(s) 384, 743, 1112, 1200, 1227, 2078, 2237, 2640
BfmI CTRYAG 1 cut(s) 1460
BfoI RGCGCY 1 cut(s) 2597
BfrI CTTAAG 2 cut(s) 428, 2377
BfuAI ACCTGC 1 cut(s) 1298
BglII AGATCT 1 cut(s) 1393
BisI GCNGC 5 cut(s) 1197, 1527, 1601, 2222, 2487
BlpI GCTNAGC 1 cut(s) 2475
BlsI GCNGC 5 cut(s) 1198, 1528, 1602, 2223, 2488
Bme1390I CCNGG 8 cut(s) 31, 38, 44, 49, 56, 1240, 1349, 2667
Bme18I GGWCC 2 cut(s) 40, 2048
BmeT110I CYCGRG 1 cut(s) 2516
BmgBI CACGTC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 40, 45, 1726, 2048
BmiI GGNNCC 7 cut(s) 35, 41, 53, 1185, 1728, 2172, 2595
BmrFI CCNGG 8 cut(s) 31, 38, 44, 49, 56, 1240, 1349, 2667
BmrI ACTGGG 2 cut(s) 2080, 2360
BmsI GCATC 6 cut(s) 618, 1195, 1346, 1357, 1923, 2090
BmtI GCTAGC 1 cut(s) 2643
BmuI ACTGGG 2 cut(s) 2080, 2360
BoxI GACNNNNGTC 1 cut(s) 1739
BpiI GAAGAC 1 cut(s) 2540
BpmI CTGGAG 1 cut(s) 1978
Bpu10I CCTNAGC 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 2475
Bpu14I TTCGAA 3 cut(s) 368, 1651, 2705
BpuEI CTTGAG 5 cut(s) 188, 251, 566, 638, 2555
BpuMI CCSGG 7 cut(s) 31, 38, 44, 49, 56, 1240, 1349
Bsa29I ATCGAT 2 cut(s) 353, 626
BsaAI YACGTR 2 cut(s) 1614, 1950
BsaHI GRCGYC 1 cut(s) 2594
BsaI GGTCTC 2 cut(s) 1407, 2238
BsaJI CCNNGG 1 cut(s) 1084
BsaXI ACNNNNNCTCC 3 cut(s) 32, 533, 563
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 37, 43, 54, 61, 1003, 1986
Bse1I ACTGG 4 cut(s) 1788, 1961, 2086, 2366
Bse21I CCTNAGG 1 cut(s) 1497
Bse3DI GCAATG 2 cut(s) 1377, 1857
BseBI CCWGG 1 cut(s) 2667
BseCI ATCGAT 2 cut(s) 353, 626
BseDI CCNNGG 1 cut(s) 1084
BseGI GGATG 8 cut(s) 458, 658, 1258, 1372, 1543, 2081, 2254, 2401
BseLI CCNNNNNNNGG 7 cut(s) 36, 37, 43, 54, 61, 1003, 1986
BseMI GCAATG 2 cut(s) 1377, 1857
BseMII CTCAG 7 cut(s) 95, 149, 1511, 1683, 1688, 1755, 2106
BseNI ACTGG 4 cut(s) 1788, 1961, 2086, 2366
BseRI GAGGAG 6 cut(s) 26, 278, 458, 554, 860, 1800
BseSI GKGCMC 1 cut(s) 1708
BseXI GCAGC 4 cut(s) 1183, 1538, 2233, 2473
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 1028
BshFI GGCC 4 cut(s) 47, 788, 1124, 1727
BshNI GGYRCC 1 cut(s) 2593
BshVI ATCGAT 2 cut(s) 353, 626
BsiHKCI CYCGRG 1 cut(s) 2516
BsiSI CCGG 7 cut(s) 31, 37, 43, 48, 55, 1240, 1349
BslFI GGGAC 2 cut(s) 491, 2258
BslI CCNNNNNNNGG 7 cut(s) 36, 37, 43, 54, 61, 1003, 1986
BsmAI GTCTC 3 cut(s) 634, 1407, 2238
BsmFI GGGAC 2 cut(s) 491, 2258
BsmI GAATGC 2 cut(s) 663, 1659
BsnI GGCC 4 cut(s) 47, 788, 1124, 1727
Bso31I GGTCTC 2 cut(s) 1407, 2238
BsoBI CYCGRG 1 cut(s) 2516
Bsp119I TTCGAA 3 cut(s) 368, 1651, 2705
Bsp1286I GDGCHC 2 cut(s) 1708, 2034
Bsp143I GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
Bsp1720I GCTNAGC 1 cut(s) 2475
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 6 cut(s) 16, 128, 1305, 1557, 1600, 1911
BspANI GGCC 4 cut(s) 47, 788, 1124, 1727
BspCNI CTCAG 7 cut(s) 96, 150, 1510, 1684, 1687, 1756, 2107
BspDI ATCGAT 2 cut(s) 353, 626
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 7 cut(s) 35, 41, 53, 1185, 1728, 2172, 2595
BspMI ACCTGC 1 cut(s) 1298
BspOI GCTAGC 1 cut(s) 2643
BspPI GGATC 2 cut(s) 1020, 1250
BspQI GCTCTTC 1 cut(s) 2650
BspT104I TTCGAA 3 cut(s) 368, 1651, 2705
BspT107I GGYRCC 1 cut(s) 2593
BspTI CTTAAG 2 cut(s) 428, 2377
BspTNI GGTCTC 2 cut(s) 1407, 2238
BsrBI CCGCTC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 1377, 1857
BsrI ACTGG 4 cut(s) 1788, 1961, 2086, 2366
BssECI CCNNGG 1 cut(s) 1084
BssMI GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
BssNI GRCGYC 1 cut(s) 2594
BssT1I CCWWGG 1 cut(s) 1084
Bst2UI CCWGG 1 cut(s) 2667
Bst4CI ACNGT 7 cut(s) 1152, 1269, 1941, 2100, 2232, 2313, 2539
Bst6I CTCTTC 7 cut(s) 177, 209, 317, 554, 711, 2607, 2650
BstACI GRCGYC 1 cut(s) 2594
BstAFI CTTAAG 2 cut(s) 428, 2377
BstAPI GCANNNNNTGC 1 cut(s) 1919
BstBAI YACGTR 2 cut(s) 1614, 1950
BstBI TTCGAA 3 cut(s) 368, 1651, 2705
BstC8I GCNNGC 3 cut(s) 786, 1122, 2641
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 8 cut(s) 458, 658, 1258, 1372, 1543, 2081, 2254, 2401
BstH2I RGCGCY 1 cut(s) 2597
BstHHI GCGC 1 cut(s) 2596
BstKTI GATC 8 cut(s) 399, 1004, 1015, 1234, 1245, 1396, 1423, 1608
BstMAI GTCTC 3 cut(s) 634, 1407, 2238
BstMBI GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
BstMWI GCNNNNNNNGC 7 cut(s) 707, 979, 1205, 1556, 1654, 1919, 2566
BstNI CCWGG 1 cut(s) 2667
BstNSI RCATGY 3 cut(s) 1337, 2045, 2425
BstPAI GACNNNNGTC 1 cut(s) 1739
BstSCI CCNGG 8 cut(s) 29, 36, 42, 47, 54, 1238, 1347, 2665
BstSFI CTRYAG 1 cut(s) 1460
BstSLI GKGCMC 1 cut(s) 1708
BstSNI TACGTA 2 cut(s) 1614, 1950
BstV1I GCAGC 4 cut(s) 1183, 1538, 2233, 2473
BstV2I GAAGAC 1 cut(s) 2540
BstX2I RGATCY 1 cut(s) 1393
BstYI RGATCY 1 cut(s) 1393
Bsu15I ATCGAT 2 cut(s) 353, 626
Bsu36I CCTNAGG 1 cut(s) 1497
BsuRI GGCC 4 cut(s) 47, 788, 1124, 1727
BsuTUI ATCGAT 2 cut(s) 353, 626
BtgI CCRYGG 1 cut(s) 1084
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 8 cut(s) 458, 658, 1258, 1372, 1543, 2081, 2254, 2401
BtsI GCAGTG 2 cut(s) 717, 1521
BtsIMutI CAGTG 7 cut(s) 717, 1521, 1781, 2093, 2373, 2501, 2704
BveI ACCTGC 1 cut(s) 1298
Cac8I GCNNGC 3 cut(s) 786, 1122, 2641
CciI TCATGA 1 cut(s) 1275
CfoI GCGC 1 cut(s) 2596
Cfr13I GGNCC 4 cut(s) 40, 45, 1726, 2048
ClaI ATCGAT 2 cut(s) 353, 626
Csp6I GTAC 2 cut(s) 1049, 1824
CviAII CATG 7 cut(s) 1085, 1249, 1276, 1334, 2042, 2422, 2500
CviQI GTAC 2 cut(s) 1049, 1824
DinI GGCGCC 1 cut(s) 2595
DpnI GATC 8 cut(s) 398, 1003, 1014, 1233, 1244, 1395, 1422, 1607
DpnII GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
Eam1104I CTCTTC 7 cut(s) 177, 209, 317, 554, 711, 2607, 2650
EarI CTCTTC 7 cut(s) 177, 209, 317, 554, 711, 2607, 2650
Eco105I TACGTA 2 cut(s) 1614, 1950
Eco130I CCWWGG 1 cut(s) 1084
Eco24I GRGCYC 1 cut(s) 2034
Eco31I GGTCTC 2 cut(s) 1407, 2238
Eco47I GGWCC 2 cut(s) 40, 2048
Eco57I CTGAAG 7 cut(s) 138, 341, 630, 2036, 2205, 2430, 2680
Eco81I CCTNAGG 1 cut(s) 1497
Eco88I CYCGRG 1 cut(s) 2516
EcoO109I RGGNCCY 1 cut(s) 1726
EcoRII CCWGG 1 cut(s) 2665
EcoT14I CCWWGG 1 cut(s) 1084
EcoT22I ATGCAT 1 cut(s) 1339
EcoT38I GRGCYC 1 cut(s) 2034
EgeI GGCGCC 1 cut(s) 2595
EheI GGCGCC 1 cut(s) 2595
ErhI CCWWGG 1 cut(s) 1084
FaeI CATG 7 cut(s) 1088, 1252, 1279, 1337, 2045, 2425, 2503
FaqI GGGAC 2 cut(s) 491, 2258
FatI CATG 7 cut(s) 1084, 1248, 1275, 1333, 2041, 2421, 2499
FauI CCCGC 1 cut(s) 1918
FbaI TGATCA 3 cut(s) 1231, 1420, 1605
Fnu4HI GCNGC 5 cut(s) 1197, 1527, 1601, 2222, 2487
FokI GGATG 8 cut(s) 465, 665, 1265, 1379, 1550, 2068, 2241, 2408
FriOI GRGCYC 1 cut(s) 2034
Fsp4HI GCNGC 5 cut(s) 1197, 1527, 1601, 2222, 2487
FspBI CTAG 8 cut(s) 384, 743, 1112, 1200, 1227, 2078, 2237, 2640
GlaI GCGC 1 cut(s) 2595
GluI GCNGC 5 cut(s) 1197, 1527, 1601, 2222, 2487
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 1978
HaeII RGCGCY 1 cut(s) 2597
HaeIII GGCC 4 cut(s) 47, 788, 1124, 1727
HapII CCGG 7 cut(s) 31, 37, 43, 48, 55, 1240, 1349
HhaI GCGC 1 cut(s) 2596
Hin1I GRCGYC 1 cut(s) 2594
Hin1II CATG 7 cut(s) 1088, 1252, 1279, 1337, 2045, 2425, 2503
Hin6I GCGC 1 cut(s) 2594
HinP1I GCGC 1 cut(s) 2594
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HindIII AAGCTT 2 cut(s) 1261, 2291
HpaII CCGG 7 cut(s) 31, 37, 43, 48, 55, 1240, 1349
Hpy166II GTNNAC 3 cut(s) 281, 963, 1826
Hpy188III TCNNGA 7 cut(s) 167, 734, 1016, 1276, 1397, 1661, 2237
Hpy8I GTNNAC 3 cut(s) 281, 963, 1826
Hpy99I CGWCG 1 cut(s) 1745
HpyCH4III ACNGT 7 cut(s) 1152, 1269, 1941, 2100, 2232, 2313, 2539
HpyCH4IV ACGT 4 cut(s) 480, 1613, 1740, 1949
HpyCH4V TGCA 9 cut(s) 661, 1009, 1162, 1337, 1370, 1936, 2069, 2421, 2499
HpyF10VI GCNNNNNNNGC 7 cut(s) 707, 979, 1205, 1556, 1654, 1919, 2566
HpySE526I ACGT 4 cut(s) 480, 1613, 1740, 1949
Hsp92I GRCGYC 1 cut(s) 2594
Hsp92II CATG 7 cut(s) 1088, 1252, 1279, 1337, 2045, 2425, 2503
HspAI GCGC 1 cut(s) 2594
KasI GGCGCC 1 cut(s) 2593
Ksp22I TGATCA 3 cut(s) 1231, 1420, 1605
Kzo9I GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
LguI GCTCTTC 1 cut(s) 2650
LmnI GCTCC 6 cut(s) 13, 58, 541, 957, 1645, 2364
Lsp1109I GCAGC 4 cut(s) 1183, 1538, 2233, 2473
LweI GCATC 6 cut(s) 618, 1195, 1346, 1357, 1923, 2090
MaeI CTAG 8 cut(s) 384, 743, 1112, 1200, 1227, 2078, 2237, 2640
MaeII ACGT 4 cut(s) 480, 1613, 1740, 1949
MaeIII GTNAC 5 cut(s) 342, 1479, 1732, 2424, 2658
MalI GATC 8 cut(s) 398, 1003, 1014, 1233, 1244, 1395, 1422, 1607
MbiI CCGCTC 1 cut(s) 16
MboI GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
MfeI CAATTG 1 cut(s) 884
MflI RGATCY 1 cut(s) 1393
MhlI GDGCHC 2 cut(s) 1708, 2034
Mly113I GGCGCC 1 cut(s) 2594
MlyI GAGTC 5 cut(s) 536, 674, 968, 1969, 2528
MmeI TCCRAC 7 cut(s) 630, 728, 966, 1905, 2026, 2198, 2295
Mph1103I ATGCAT 1 cut(s) 1339
MroXI GAANNNNTTC 2 cut(s) 1877, 2215
MslI CAYNNNNRTG 2 cut(s) 1968, 2086
MspA1I CMGCKG 2 cut(s) 1529, 1559
MspCI CTTAAG 2 cut(s) 428, 2377
MspI CCGG 7 cut(s) 31, 37, 43, 48, 55, 1240, 1349
MspR9I CCNGG 8 cut(s) 31, 38, 44, 49, 56, 1240, 1349, 2667
MunI CAATTG 1 cut(s) 884
Mva1269I GAATGC 2 cut(s) 663, 1659
MvaI CCWGG 1 cut(s) 2667
MwoI GCNNNNNNNGC 7 cut(s) 707, 979, 1205, 1556, 1654, 1919, 2566
NarI GGCGCC 1 cut(s) 2594
NciI CCSGG 7 cut(s) 31, 38, 44, 49, 56, 1240, 1349
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
NheI GCTAGC 1 cut(s) 2639
NlaIII CATG 7 cut(s) 1088, 1252, 1279, 1337, 2045, 2425, 2503
NlaIV GGNNCC 7 cut(s) 35, 41, 53, 1185, 1728, 2172, 2595
NmuCI GTSAC 4 cut(s) 1479, 1732, 2424, 2658
NsiI ATGCAT 1 cut(s) 1339
NspI RCATGY 3 cut(s) 1337, 2045, 2425
NspV TTCGAA 3 cut(s) 368, 1651, 2705
PaeR7I CTCGAG 1 cut(s) 2516
PagI TCATGA 1 cut(s) 1275
PciI ACATGT 1 cut(s) 2041
PciSI GCTCTTC 1 cut(s) 2650
PctI GAATGC 2 cut(s) 663, 1659
PdmI GAANNNNTTC 2 cut(s) 1877, 2215
PfoI TCCNGGA 2 cut(s) 54, 1238
PkrI GCNGC 5 cut(s) 1198, 1528, 1602, 2223, 2488
PleI GAGTC 5 cut(s) 535, 673, 967, 1968, 2527
PluTI GGCGCC 1 cut(s) 2597
PpsI GAGTC 5 cut(s) 535, 673, 967, 1968, 2527
Ppu21I YACGTR 2 cut(s) 1614, 1950
PscI ACATGT 1 cut(s) 2041
PshAI GACNNNNGTC 1 cut(s) 1739
PshBI ATTAAT 1 cut(s) 1491
PsiI TTATAA 1 cut(s) 2198
Psp6I CCWGG 1 cut(s) 2665
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 1 cut(s) 2665
PspN4I GGNNCC 7 cut(s) 35, 41, 53, 1185, 1728, 2172, 2595
PspPI GGNCC 4 cut(s) 40, 45, 1726, 2048
PspXI VCTCGAGB 1 cut(s) 2516
PsuI RGATCY 1 cut(s) 1393
PvuII CAGCTG 1 cut(s) 1529
RsaI GTAC 2 cut(s) 1050, 1825
RsaNI GTAC 2 cut(s) 1049, 1824
RseI CAYNNNNRTG 2 cut(s) 1968, 2086
SapI GCTCTTC 1 cut(s) 2650
SatI GCNGC 5 cut(s) 1197, 1527, 1601, 2222, 2487
Sau3AI GATC 8 cut(s) 396, 1001, 1012, 1231, 1242, 1393, 1420, 1605
Sau96I GGNCC 4 cut(s) 40, 45, 1726, 2048
SchI GAGTC 5 cut(s) 536, 674, 968, 1969, 2528
ScrFI CCNGG 8 cut(s) 31, 38, 44, 49, 56, 1240, 1349, 2667
SduI GDGCHC 2 cut(s) 1708, 2034
SfaNI GCATC 6 cut(s) 618, 1195, 1346, 1357, 1923, 2090
SfcI CTRYAG 1 cut(s) 1460
SfoI GGCGCC 1 cut(s) 2595
Sfr274I CTCGAG 1 cut(s) 2516
SfuI TTCGAA 3 cut(s) 368, 1651, 2705
SinI GGWCC 2 cut(s) 40, 2048
SlaI CTCGAG 1 cut(s) 2516
SmiMI CAYNNNNRTG 2 cut(s) 1968, 2086
SmlI CTYRAG 8 cut(s) 167, 230, 428, 545, 617, 2377, 2516, 2570
SmoI CTYRAG 8 cut(s) 167, 230, 428, 545, 617, 2377, 2516, 2570
SnaBI TACGTA 2 cut(s) 1614, 1950
SpeI ACTAGT 1 cut(s) 1226
SsiI CCGC 6 cut(s) 16, 128, 1305, 1557, 1600, 1911
SspDI GGCGCC 1 cut(s) 2593
SspI AATATT 1 cut(s) 2005
SspMI CTAG 8 cut(s) 384, 743, 1112, 1200, 1227, 2078, 2237, 2640
StyD4I CCNGG 8 cut(s) 29, 36, 42, 47, 54, 1238, 1347, 2665
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 7 cut(s) 1152, 1269, 1941, 2100, 2232, 2313, 2539
TaiI ACGT 4 cut(s) 483, 1616, 1743, 1952
TatI WGTACW 1 cut(s) 1823
TauI GCSGC 1 cut(s) 1603
TscAI CASTG 7 cut(s) 717, 1521, 1788, 2093, 2373, 2501, 2704
TseFI GTSAC 4 cut(s) 1479, 1732, 2424, 2658
TseI GCWGC 4 cut(s) 1196, 1526, 2221, 2486
Tsp45I GTSAC 4 cut(s) 1479, 1732, 2424, 2658
TspGWI ACGGA 2 cut(s) 23, 1377
TspRI CASTG 7 cut(s) 717, 1521, 1788, 2093, 2373, 2501, 2704
Vha464I CTTAAG 2 cut(s) 428, 2377
VpaK11BI GGWCC 2 cut(s) 40, 2048
VspI ATTAAT 1 cut(s) 1491
XapI RAATTY 2 cut(s) 176, 688
XbaI TCTAGA 1 cut(s) 2236
XceI RCATGY 3 cut(s) 1337, 2045, 2425
XhoI CTCGAG 1 cut(s) 2516
XmnI GAANNNNTTC 2 cut(s) 1877, 2215
XspI CTAG 8 cut(s) 384, 743, 1112, 1200, 1227, 2078, 2237, 2640
Zsp2I ATGCAT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.