AT3G04990

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000126
Physical Location & Seq
Reverse (-)
1383953 .. 1384679
727 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04990.1

Sequence Viewer

Length: 684 bp
ATGGAGAAACTCAAAGCTGATGCTGCCGAAATAATGATCTGCGCCGGTCAACTGAAAGGTTTACTCAACCATTTGCGCATGGGTGAAGCCAACATTGAGAAGAGCTCTCGAGAGCTAGATTTAAAGGAGAAGGAGCTGCAAATTTTGAGCTCAGACCTTGAGCAAAAGAGTCATGCTTTTGAAGCAGAGAAATCTGAAGTTGGTGATTTGAAGAAATTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTGGATTCGTTGATAAGGGTTCAGAGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTTATGGCTGAGCTTAAGAGGCGTTACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAAATGGAAGATGAAACAGCTACAAAAAAGAAAGAGTTGTCTATGACTGTTGACCAGATTCAAGAATCTGGCAAACAGCTTGAGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGATTGAAGAGAAAGGAAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGGAAACTCATTCAGCTGAGTAAATTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGGAAAGATCAAGTGGATTCATCGAACAACACTTATGTGAAAGAGTTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 Frigida

Protein Analysis

227

Amino Acids

26.31

Weight (kDa)

5.89

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS1 PF25762 42 - 198 1.1e-06 HAUS augmin-like complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 2 cut(s) 216, 255
AfaI GTAC 3 cut(s) 232, 330, 613
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 6 cut(s) 182, 211, 380, 455, 502, 518
AleI CACNNNNGTG 1 cut(s) 665
Alw21I GWGCWC 2 cut(s) 107, 152
Alw26I GTCTC 1 cut(s) 489
Ama87I CYCGRG 2 cut(s) 108, 486
ApeKI GCWGC 2 cut(s) 23, 136
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 2 cut(s) 44, 78
AsuHPI GGTGA 2 cut(s) 95, 215
AvaI CYCGRG 2 cut(s) 108, 486
BanII GRGCYC 2 cut(s) 107, 152
Bbv12I GWGCWC 2 cut(s) 107, 152
BbvI GCAGC 2 cut(s) 10, 123
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 24, 137
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 2 cut(s) 25, 138
BmeT110I CYCGRG 2 cut(s) 108, 486
BmsI GCATC 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu1102I GCTNAGC 1 cut(s) 342
BpuEI CTTGAG 3 cut(s) 179, 326, 494
BsaJI CCNNGG 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bse118I RCCGGY 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 629
BseMII CTCAG 4 cut(s) 165, 233, 333, 578
BseXI GCAGC 2 cut(s) 10, 123
BsiHKAI GWGCWC 2 cut(s) 107, 152
BsiHKCI CYCGRG 2 cut(s) 108, 486
BsiSI CCGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 489
BsoBI CYCGRG 2 cut(s) 108, 486
Bsp1286I GDGCHC 2 cut(s) 107, 152
Bsp143I GATC 2 cut(s) 36, 637
Bsp1720I GCTNAGC 1 cut(s) 342
BspCNI CTCAG 4 cut(s) 164, 234, 334, 579
BspQI GCTCTTC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 2 cut(s) 36, 637
Bst4CI ACNGT 3 cut(s) 268, 362, 442
Bst6I CTCTTC 3 cut(s) 95, 219, 513
BstAFI CTTAAG 1 cut(s) 347
BstDEI CTNAG 5 cut(s) 151, 242, 342, 587, 623
BstHHI GCGC 2 cut(s) 44, 78
BstKTI GATC 2 cut(s) 39, 640
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 2 cut(s) 36, 637
BstMWI GCNNNNNNNGC 3 cut(s) 23, 182, 352
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 10, 123
BtsIMutI CAGTG 1 cut(s) 367
CfoI GCGC 2 cut(s) 44, 78
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 3 cut(s) 231, 329, 612
CviAII CATG 4 cut(s) 79, 173, 374, 564
CviQI GTAC 3 cut(s) 231, 329, 612
DdeI CTNAG 5 cut(s) 151, 242, 342, 587, 623
DpnI GATC 2 cut(s) 38, 639
DpnII GATC 2 cut(s) 36, 637
DraI TTTAAA 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 95, 219, 513
EarI CTCTTC 3 cut(s) 95, 219, 513
Ecl136II GAGCTC 2 cut(s) 105, 150
Eco24I GRGCYC 2 cut(s) 107, 152
Eco53kI GAGCTC 2 cut(s) 105, 150
Eco57I CTGAAG 2 cut(s) 216, 255
Eco88I CYCGRG 2 cut(s) 108, 486
EcoICRI GAGCTC 2 cut(s) 105, 150
EcoT38I GRGCYC 2 cut(s) 107, 152
FaeI CATG 4 cut(s) 82, 176, 377, 567
FaiI YATR 7 cut(s) 80, 174, 338, 375, 437, 565, 666
FatI CATG 4 cut(s) 78, 172, 373, 563
Fnu4HI GCNGC 2 cut(s) 24, 137
FriOI GRGCYC 2 cut(s) 107, 152
Fsp4HI GCNGC 2 cut(s) 24, 137
FspBI CTAG 1 cut(s) 116
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 2 cut(s) 43, 77
GluI GCNGC 2 cut(s) 24, 137
HapII CCGG 1 cut(s) 45
HhaI GCGC 2 cut(s) 44, 78
Hin1II CATG 4 cut(s) 82, 176, 377, 567
Hin6I GCGC 2 cut(s) 42, 76
HinP1I GCGC 2 cut(s) 42, 76
HincII GTYRAC 2 cut(s) 50, 445
HindII GTYRAC 2 cut(s) 50, 445
HinfI GANTC 7 cut(s) 169, 256, 278, 451, 458, 550, 647
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 95, 215
Hpy166II GTNNAC 4 cut(s) 50, 62, 231, 445
Hpy188I TCNGA 4 cut(s) 154, 196, 297, 630
Hpy188III TCNNGA 4 cut(s) 108, 110, 455, 488
Hpy8I GTNNAC 4 cut(s) 50, 62, 231, 445
HpyAV CCTTC 2 cut(s) 124, 496
HpyCH4III ACNGT 3 cut(s) 268, 362, 442
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 182, 352
HpyF3I CTNAG 5 cut(s) 151, 242, 342, 587, 623
Hsp92II CATG 4 cut(s) 82, 176, 377, 567
HspAI GCGC 2 cut(s) 42, 76
Kzo9I GATC 2 cut(s) 36, 637
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 58, 260, 317, 447, 461
Lsp1109I GCAGC 2 cut(s) 10, 123
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 356
MalI GATC 2 cut(s) 38, 639
MboI GATC 2 cut(s) 36, 637
MboII GAAGA 7 cut(s) 112, 223, 236, 248, 413, 490, 530
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 107, 152
MluCI AATT 4 cut(s) 141, 215, 323, 593
MlyI GAGTC 2 cut(s) 178, 559
MnlI CCTC 6 cut(s) 237, 246, 345, 358, 484, 624
MseI TTAA 4 cut(s) 122, 311, 348, 546
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 23, 182, 352
NdeII GATC 2 cut(s) 36, 637
NlaIII CATG 4 cut(s) 82, 176, 377, 567
NsbI TGCGCA 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 5 cut(s) 256, 278, 451, 458, 647
PkrI GCNGC 2 cut(s) 25, 138
PleI GAGTC 2 cut(s) 177, 558
PpsI GAGTC 2 cut(s) 177, 558
Psp124BI GAGCTC 2 cut(s) 107, 152
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 3 cut(s) 232, 330, 613
RsaNI GTAC 3 cut(s) 231, 329, 612
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 2 cut(s) 107, 152
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 122, 311, 348, 546
SatI GCNGC 2 cut(s) 24, 137
Sau3AI GATC 2 cut(s) 36, 637
SchI GAGTC 2 cut(s) 178, 559
SduI GDGCHC 2 cut(s) 107, 152
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 5 cut(s) 108, 158, 305, 347, 473
SmoI CTYRAG 5 cut(s) 108, 158, 305, 347, 473
Sse9I AATT 4 cut(s) 141, 215, 323, 593
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 2 cut(s) 107, 152
TaaI ACNGT 3 cut(s) 268, 362, 442
TaqI TCGA 2 cut(s) 109, 653
TasI AATT 4 cut(s) 141, 215, 323, 593
TatI WGTACW 2 cut(s) 230, 611
TfiI GAWTC 5 cut(s) 256, 278, 451, 458, 647
Tru1I TTAA 4 cut(s) 122, 311, 348, 546
Tru9I TTAA 4 cut(s) 122, 311, 348, 546
TscAI CASTG 1 cut(s) 367
TseI GCWGC 2 cut(s) 23, 136
TspDTI ATGAA 2 cut(s) 420, 639
TspRI CASTG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 347
XapI RAATTY 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 108
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.