Rorug02G0644900

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000126
Physical Location & Seq
Forward (+)
75534327 .. 75535838
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0644900.1

Sequence Viewer

Length: 594 bp
ATGGCGGTCGCGTCTATGAGTTTCAACCTAGTCGGAGCATTCAGAGGTATGGCTCTGAGCTCAAGCTCTTCCTCTTCCTCCTCTTTCTTCAGAGGTGATTTGGGCTCCGTCCAATTGGGCCCAAAGCTATCCTTGTCTACTACTAGCCAACGCAGATTGCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGTAGTACCAAGAACGGTCGCGATTCCAAAGGCCAAAGGCTCGGGGTTAAGATTTACGGTGACCAGGTCGCCAAGCCCGGCTCCATCATCATACGTCAGCGGGGCACCAAGTTCCATGCGGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCTCTGATTGATGGGTTGGTTAAGTTTGAGAAGTATGGACCTGACAGGAAGAAGGTGAGTGTTTACCCTCGGGAGATACAGCCTGAAAATCCCAACAGCTACAGGGTTAGGAAGAGGGAGAACTTCAAGCTACAACGCGAGAAAAAGAAAGCAAGAAAGGAAGGCTATATTCTTCAAAACAAACCACAACTGGTGCTTGCATCTGCTGATAATGGTGCAGAGACCAATCCTCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

10.48

Isoelectric Point (pI)

23.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L27 PF01016 60 - 139 8.6e-36 Ribosomal L27 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 137
AccII CGCG 4 cut(s) 11, 179, 216, 492
AciI CCGC 3 cut(s) 5, 295, 314
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 4 cut(s) 25, 173, 481, 530
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 6 cut(s) 60, 66, 127, 194, 453, 484
AluI AGCT 6 cut(s) 60, 66, 127, 194, 453, 484
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 569
Ama87I CYCGRG 2 cut(s) 236, 423
AoxI GGCC 2 cut(s) 118, 226
ApaI GGGCCC 1 cut(s) 122
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 4 cut(s) 118, 119, 340, 392
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 3 cut(s) 107, 266, 421
AvaI CYCGRG 2 cut(s) 236, 423
AvaII GGWCC 2 cut(s) 340, 392
BaeGI GKGCMC 2 cut(s) 122, 302
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 3 cut(s) 62, 107, 122
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 2 cut(s) 287, 359
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 29, 144
BfmI CTRYAG 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 260, 273
Bme18I GGWCC 2 cut(s) 340, 392
BmeT110I CYCGRG 2 cut(s) 236, 423
BmgT120I GGNCC 4 cut(s) 118, 119, 340, 392
BmiI GGNNCC 4 cut(s) 106, 120, 277, 301
BmrFI CCNGG 2 cut(s) 260, 273
BmsI GCATC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 2 cut(s) 122, 302
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 4 cut(s) 11, 179, 216, 492
Bsh1285I CGRYCG 2 cut(s) 9, 214
BshFI GGCC 2 cut(s) 120, 228
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 2 cut(s) 9, 214
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 2 cut(s) 236, 423
BsiSI CCGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 120, 228
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 2 cut(s) 236, 423
Bsp120I GGGCCC 1 cut(s) 118
Bsp1286I GDGCHC 4 cut(s) 62, 107, 122, 302
Bsp68I TCGCGA 1 cut(s) 216
BspACI CCGC 3 cut(s) 5, 295, 314
BspANI GGCC 2 cut(s) 120, 228
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 4 cut(s) 11, 179, 216, 492
BspLI GGNNCC 4 cut(s) 106, 120, 277, 301
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 212, 254
Bst6I CTCTTC 3 cut(s) 73, 79, 461
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 56
BstEII GGTNACC 1 cut(s) 254
BstFNI CGCG 4 cut(s) 11, 179, 216, 492
BstHHI GCGC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 569
BstMCI CGRYCG 2 cut(s) 9, 214
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 258, 271
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 2 cut(s) 122, 302
BstUI CGCG 4 cut(s) 11, 179, 216, 492
BsuRI GGCC 2 cut(s) 120, 228
BtuMI TCGCGA 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 552
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 4 cut(s) 118, 119, 340, 392
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 311
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 56
Eam1104I CTCTTC 3 cut(s) 73, 79, 461
EarI CTCTTC 3 cut(s) 73, 79, 461
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 3 cut(s) 62, 107, 122
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 340, 392
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 73
Eco88I CYCGRG 2 cut(s) 236, 423
Eco91I GGTNACC 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 60
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 258
EcoT38I GRGCYC 3 cut(s) 62, 107, 122
FaeI CATG 1 cut(s) 314
FaiI YATR 7 cut(s) 17, 50, 287, 312, 345, 390, 522
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 1 cut(s) 310
FauI CCCGC 2 cut(s) 288, 307
FblI GTMKAC 1 cut(s) 137
FriOI GRGCYC 3 cut(s) 62, 107, 122
FspBI CTAG 2 cut(s) 29, 144
GlaI GCGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 120, 228
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 169, 218
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 107, 266, 421
Hpy166II GTNNAC 2 cut(s) 138, 418
Hpy188I TCNGA 5 cut(s) 35, 44, 57, 92, 360
Hpy188III TCNNGA 2 cut(s) 215, 425
Hpy8I GTNNAC 2 cut(s) 138, 418
HpyAV CCTTC 2 cut(s) 400, 509
HpyCH4III ACNGT 2 cut(s) 212, 254
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 554, 572
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 4 cut(s) 35, 110, 191, 281
LpnPI CCDG 9 cut(s) 180, 245, 272, 286, 385, 408, 442, 450, 530
LweI GCATC 1 cut(s) 563
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 2 cut(s) 29, 144
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 7 cut(s) 60, 66, 79, 331, 415, 478, 518
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 4 cut(s) 62, 107, 122, 302
MluCI AATT 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 8 cut(s) 38, 82, 86, 88, 91, 432, 462, 594
MseI TTAA 2 cut(s) 243, 375
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 260, 273
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 4 cut(s) 11, 179, 216, 492
NciI CCSGG 1 cut(s) 273
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 4 cut(s) 106, 120, 277, 301
NmuCI GTSAC 1 cut(s) 254
NruI TCGCGA 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 73
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 169, 218
PflFI GACNNNGTC 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 4 cut(s) 106, 120, 277, 301
PspOMI GGGCCC 1 cut(s) 118
PspPI GGNCC 4 cut(s) 118, 119, 340, 392
PsyI GACNNNGTC 1 cut(s) 260
RruI TCGCGA 1 cut(s) 216
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 243, 375
Sau96I GGNCC 4 cut(s) 118, 119, 340, 392
ScrFI CCNGG 2 cut(s) 260, 273
SduI GDGCHC 4 cut(s) 62, 107, 122, 302
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 1 cut(s) 563
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 2 cut(s) 340, 392
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 113
SsiI CCGC 3 cut(s) 5, 295, 314
SspMI CTAG 2 cut(s) 29, 144
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 258, 271
TaaI ACNGT 2 cut(s) 212, 254
TaiI ACGT 1 cut(s) 292
TasI AATT 1 cut(s) 113
TfiI GAWTC 2 cut(s) 169, 218
Tru1I TTAA 2 cut(s) 243, 375
Tru9I TTAA 2 cut(s) 243, 375
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 340, 392
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 2 cut(s) 29, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.