RchiOBHm_Chr2g0124181

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000126
Physical Location & Seq
Reverse (-)
37527645 .. 37528944
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49641

Sequence Viewer

Length: 591 bp
ATGGGACTTTCAACACATGTTGGACCTCATCTGAAAGAAAATGCAAAAAATCTAGCATCCCAGTGGAAAGAAAAGTTGAGAGGTGATACTGAAAATTCATTGGAGAGTTTGGGGTGTTTGCTGTTTATAGCTGTGTATGAATTGCTTGGAACCTTACATGAAGATGAGATTGTAATGCTTCTTAGAAGGGTTTCGCAGCATAAACAGTCTCTAGAGTTATGTCAGACACATGGTTTTGCAGATTATATCCCTGATTTTATACGGAAGCTTATTGAAAAGAAGCCACTGATGGAGGCTGTTAGATCTATTTGTGCCTTCAAATTATTTGACAAGCTCCCCCCAGTGCCACTCTTAAAAGAATATGTGGATGATGTAATGATGTGTTCCGAAGTAATTTGCGGGTCACAGATGATACCTGATGAAAAGGATAAGGCTCTGAATGGTAAAATAGCTGATCTGAGAGCTGCCATTCAATGCATCAAAAATTACGACCTCGAGTCTGAATACCCGTCCAAGACTGTTGAATTGCAAATAATTCAGCTTGAAATGCTGAAGGAAAAATGGAGGAGTTTGGCTAGTACCCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

196

Amino Acids

22.35

Weight (kDa)

5.78

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 6 - 187 9.1e-43 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 6 cut(s) 12, 275, 319, 473, 524, 545
AhdI GACNNNNNGTC 1 cut(s) 496
AluBI AGCT 6 cut(s) 131, 268, 334, 452, 464, 541
AluI AGCT 6 cut(s) 131, 268, 334, 452, 464, 541
Alw26I GTCTC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 196, 464
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 208, 451
BccI CCATC 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 3 cut(s) 53, 212, 576
BglII AGATCT 1 cut(s) 302
BisI GCNGC 2 cut(s) 197, 465
BlsI GCNGC 2 cut(s) 198, 466
Bme18I GGWCC 1 cut(s) 23
BmeRI GACNNNNNGTC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 151
BmrI ACTGGG 2 cut(s) 55, 335
BmsI GCATC 2 cut(s) 65, 486
BmuI ACTGGG 2 cut(s) 55, 335
Bse1I ACTGG 2 cut(s) 61, 341
BseGI GGATG 2 cut(s) 56, 373
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 2 cut(s) 61, 341
BseRI GAGGAG 1 cut(s) 580
BseXI GCAGC 2 cut(s) 208, 451
BsiHKCI CYCGRG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 2 cut(s) 302, 454
BspACI CCGC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 151
BsrI ACTGG 2 cut(s) 61, 341
BssMI GATC 2 cut(s) 302, 454
Bst4CI ACNGT 2 cut(s) 207, 520
BstDEI CTNAG 2 cut(s) 182, 458
BstF5I GGATG 2 cut(s) 56, 373
BstKTI GATC 2 cut(s) 305, 457
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 302, 454
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 208, 451
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 2 cut(s) 56, 373
BtsIMutI CAGTG 3 cut(s) 68, 284, 348
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 579
CviAII CATG 3 cut(s) 17, 158, 230
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 182, 458
DpnI GATC 2 cut(s) 304, 456
DpnII GATC 2 cut(s) 302, 454
DriI GACNNNNNGTC 1 cut(s) 496
Eam1105I GACNNNNNGTC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 494
EcoT22I ATGCAT 1 cut(s) 479
FaeI CATG 3 cut(s) 20, 161, 233
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 16, 157, 229
FauI CCCGC 1 cut(s) 392
Fnu4HI GCNGC 2 cut(s) 197, 465
FokI GGATG 2 cut(s) 43, 380
Fsp4HI GCNGC 2 cut(s) 197, 465
FspBI CTAG 3 cut(s) 53, 212, 576
GluI GCNGC 2 cut(s) 197, 465
Hin1II CATG 3 cut(s) 20, 161, 233
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 497
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 6 cut(s) 33, 225, 388, 438, 459, 502
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 180, 325, 547
HpyCH4III ACNGT 2 cut(s) 207, 520
HpyCH4V TGCA 4 cut(s) 44, 239, 477, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 2 cut(s) 182, 458
Hsp92II CATG 3 cut(s) 20, 161, 233
Kzo9I GATC 2 cut(s) 302, 454
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 4 cut(s) 74, 264, 354, 429
Lsp1109I GCAGC 2 cut(s) 208, 451
LweI GCATC 2 cut(s) 65, 486
MaeI CTAG 3 cut(s) 53, 212, 576
MaeIII GTNAC 1 cut(s) 402
MalI GATC 2 cut(s) 304, 456
MboI GATC 2 cut(s) 302, 454
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 302
MluCI AATT 7 cut(s) 94, 140, 320, 393, 484, 524, 534
MlyI GAGTC 1 cut(s) 506
MnlI CCTC 5 cut(s) 36, 74, 286, 503, 558
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 61, 162
MwoI GCNNNNNNNGC 1 cut(s) 547
NdeII GATC 2 cut(s) 302, 454
NlaIII CATG 3 cut(s) 20, 161, 233
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 402
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 494
PciI ACATGT 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 198, 466
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PscI ACATGT 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 494
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 2 cut(s) 61, 162
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 2 cut(s) 197, 465
Sau3AI GATC 2 cut(s) 302, 454
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 506
SfaNI GCATC 2 cut(s) 65, 486
Sfr274I CTCGAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 61, 162
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 7 cut(s) 94, 140, 320, 393, 484, 524, 534
SsiI CCGC 1 cut(s) 399
SspMI CTAG 3 cut(s) 53, 212, 576
TaaI ACNGT 2 cut(s) 207, 520
TaqI TCGA 1 cut(s) 495
TasI AATT 7 cut(s) 94, 140, 320, 393, 484, 524, 534
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 3 cut(s) 68, 291, 348
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 2 cut(s) 196, 464
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 4 cut(s) 87, 153, 174, 435
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 3 cut(s) 68, 291, 348
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 3 cut(s) 53, 212, 576
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.