Rmu_sc0005888.1_g000012

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0000126
Physical Location & Seq
Reverse (-)
58505 .. 59671
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005888.1_g000012.1.cds

Sequence Viewer

Length: 1047 bp
atgaaaattgaaaaaacaaaatctccagtagcccaaaatgaagcaaccatctcttctccaaatcttcagcaagctgccaccactattgacgcaaggaacttgcaggggtttcaaaatgagcagtttcgtgaagcctgtgattctgctgattctgctttgaaaagtattatttatgatcttattggaaagaagagactgattgcggctgttgggttgatttacaccatgaagttatttgacaagtttcccccagtacaaatcttaaaagaatatgttgataacggaaagaggtgctgcaggaatagaaccaagagaaagaaatcgctggatgaaaaggatatgattacagaccagcatatagcagatctacgagttgttattcaatgtatcaaagattacaacctcgagtctgaatgtccacctgaagaaattgaatcacaaattgctgcgcttgaaattgttaaggagcggagacgtttagcgtcatcttctcttgttttgaaggttgaacaacagctaaaggtgctgaaaaatgttgaagtacaagaacaacaagagcagaaagcctccaagggtgaacaacaagaacagcaaaaagaacagaaaacctctgaggctaaactacaagaaaaagtacagcagaaagcctccaataaggttgaagaacaacaacagcaacaagagaaaaacgcctccaaggttaaacagcaagaacaacaagagcagaaagccttcaaagttaaacaattgcagaaaaaagggaataaacgtccaaacagcacatttgcccccaggtttgatcaccaacagcagtgtaaaaataaatttcaaagaacatctatattagctgatagacacccggaccaccctgactatccgaatccaagttcatcaacttggacacatgaaagtaatggataccgtgaacagtttggtactgccgtcaacaagtatgaagttcatgctaattatggatatcctgtgcagtttggtactcctgccgatggtagcgctatttatgcatacggtggacaaatctcggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

348

Amino Acids

39.85

Weight (kDa)

8.96

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 469
AciI CCGC 2 cut(s) 203, 469
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 2 cut(s) 50, 444
AfaI GTAC 5 cut(s) 255, 543, 636, 937, 994
AfeI AGCGCT 1 cut(s) 1012
AfiI CCNNNNNNNGG 1 cut(s) 1004
AjnI CCWGG 1 cut(s) 791
AluBI AGCT 3 cut(s) 74, 517, 848
AluI AGCT 3 cut(s) 74, 517, 848
Alw26I GTCTC 2 cut(s) 187, 466
Ama87I CYCGRG 1 cut(s) 404
Aor51HI AGCGCT 1 cut(s) 1012
ApeKI GCWGC 3 cut(s) 74, 294, 446
ApoI RAATTY 1 cut(s) 824
Asp700I GAANNNNTTC 1 cut(s) 731
AspLEI GCGC 2 cut(s) 451, 1013
AspS9I GGNCC 1 cut(s) 862
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 2 cut(s) 587, 794
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BbvI GCAGC 3 cut(s) 61, 281, 433
BccI CCATC 2 cut(s) 56, 998
BceAI ACGGC 1 cut(s) 926
BciT130I CCWGG 1 cut(s) 793
BciVI GTATCC 1 cut(s) 911
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 2 cut(s) 187, 466
BfmI CTRYAG 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 1014
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 364
BisI GCNGC 4 cut(s) 75, 204, 295, 447
BlsI GCNGC 4 cut(s) 76, 205, 296, 448
Bme1390I CCNGG 2 cut(s) 793, 860
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 862
BmrFI CCNGG 2 cut(s) 793, 860
BmrI ACTGGG 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 860
BsaJI CCNNGG 3 cut(s) 570, 696, 791
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 1004
Bse1I ACTGG 2 cut(s) 26, 251
BseBI CCWGG 1 cut(s) 793
BseDI CCNNGG 3 cut(s) 570, 696, 791
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 1004
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 2 cut(s) 26, 251
BseXI GCAGC 3 cut(s) 61, 281, 433
BsgI GTGCAG 1 cut(s) 1004
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 860
BslI CCNNNNNNNGG 1 cut(s) 1004
BsmAI GTCTC 2 cut(s) 187, 466
BsmBI CGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 404
Bsp143I GATC 3 cut(s) 175, 364, 799
BspACI CCGC 2 cut(s) 203, 469
BspCNI CTCAG 1 cut(s) 604
BspMAI CTGCAG 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 2 cut(s) 26, 251
BssECI CCNNGG 3 cut(s) 570, 696, 791
BssMI GATC 3 cut(s) 175, 364, 799
BssT1I CCWWGG 2 cut(s) 570, 696
Bst2UI CCWGG 1 cut(s) 793
Bst4CI ACNGT 3 cut(s) 923, 930, 1028
Bst6I CTCTTC 2 cut(s) 58, 185
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 2 cut(s) 451, 1013
BstKTI GATC 3 cut(s) 178, 367, 802
BstMAI GTCTC 2 cut(s) 187, 466
BstMBI GATC 3 cut(s) 175, 364, 799
BstMWI GCNNNNNNNGC 3 cut(s) 152, 523, 1019
BstNI CCWGG 1 cut(s) 793
BstSCI CCNGG 2 cut(s) 791, 858
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 61, 281, 433
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 911
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 2 cut(s) 451, 1013
Cfr13I GGNCC 1 cut(s) 862
CseI GACGC 2 cut(s) 98, 471
Csp6I GTAC 5 cut(s) 254, 542, 635, 936, 993
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 226, 905, 962
CviQI GTAC 5 cut(s) 254, 542, 635, 936, 993
DdeI CTNAG 1 cut(s) 612
DpnI GATC 3 cut(s) 177, 366, 801
DpnII GATC 3 cut(s) 175, 364, 799
Eam1104I CTCTTC 2 cut(s) 58, 185
EarI CTCTTC 2 cut(s) 58, 185
Eco130I CCWWGG 2 cut(s) 570, 696
Eco32I GATATC 1 cut(s) 977
Eco47I GGWCC 1 cut(s) 862
Eco47III AGCGCT 1 cut(s) 1012
Eco57I CTGAAG 2 cut(s) 50, 444
Eco88I CYCGRG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 791
EcoRV GATATC 1 cut(s) 977
EcoT14I CCWWGG 2 cut(s) 570, 696
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 2 cut(s) 570, 696
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 3 cut(s) 229, 908, 965
FatI CATG 3 cut(s) 225, 904, 961
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 75, 204, 295, 447
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 75, 204, 295, 447
GlaI GCGC 2 cut(s) 450, 1012
GluI GCNGC 4 cut(s) 75, 204, 295, 447
GsuI CTGGAG 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 1014
HapII CCGG 1 cut(s) 860
HgaI GACGC 2 cut(s) 98, 471
HhaI GCGC 2 cut(s) 451, 1013
Hin1II CATG 3 cut(s) 229, 908, 965
Hin6I GCGC 2 cut(s) 449, 1011
HinP1I GCGC 2 cut(s) 449, 1011
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 5 cut(s) 140, 149, 407, 434, 880
HpaII CCGG 1 cut(s) 860
HphI GGTGA 2 cut(s) 587, 794
Hpy166II GTNNAC 5 cut(s) 419, 578, 926, 946, 1031
Hpy188I TCNGA 4 cut(s) 412, 613, 879, 1042
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 5 cut(s) 419, 578, 926, 946, 1031
HpyAV CCTTC 2 cut(s) 496, 742
HpyCH4III ACNGT 3 cut(s) 923, 930, 1028
HpyCH4IV ACGT 2 cut(s) 475, 769
HpyCH4V TGCA 5 cut(s) 103, 297, 751, 985, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 523, 1019
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 2 cut(s) 475, 769
Hsp92II CATG 3 cut(s) 229, 908, 965
HspAI GCGC 2 cut(s) 449, 1011
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 3 cut(s) 175, 364, 799
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 61, 281, 433
MaeII ACGT 2 cut(s) 475, 769
MalI GATC 3 cut(s) 177, 366, 801
MbiI CCGCTC 1 cut(s) 469
MboI GATC 3 cut(s) 175, 364, 799
MboII GAAGA 6 cut(s) 45, 56, 202, 437, 480, 674
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 1 cut(s) 364
MluCI AATT 7 cut(s) 6, 429, 441, 456, 746, 824, 967
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 7 cut(s) 282, 413, 577, 607, 619, 658, 703
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 4 cut(s) 263, 462, 702, 741
MspI CCGG 1 cut(s) 860
MspR9I CCNGG 2 cut(s) 793, 860
MunI CAATTG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 793
MwoI GCNNNNNNNGC 3 cut(s) 152, 523, 1019
NciI CCSGG 1 cut(s) 860
NdeII GATC 3 cut(s) 175, 364, 799
NlaIII CATG 3 cut(s) 229, 908, 965
NsiI ATGCAT 1 cut(s) 1024
PaeR7I CTCGAG 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 731
PfeI GAWTC 4 cut(s) 140, 149, 434, 880
PkrI GCNGC 4 cut(s) 76, 205, 296, 448
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 791
PspGI CCWGG 1 cut(s) 791
PspPI GGNCC 1 cut(s) 862
PspXI VCTCGAGB 1 cut(s) 404
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 5 cut(s) 255, 543, 636, 937, 994
RsaNI GTAC 5 cut(s) 254, 542, 635, 936, 993
SaqAI TTAA 4 cut(s) 263, 462, 702, 741
SatI GCNGC 4 cut(s) 75, 204, 295, 447
Sau3AI GATC 3 cut(s) 175, 364, 799
Sau96I GGNCC 1 cut(s) 862
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 793, 860
SfcI CTRYAG 1 cut(s) 295
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 7 cut(s) 6, 429, 441, 456, 746, 824, 967
SsiI CCGC 2 cut(s) 203, 469
StyD4I CCNGG 2 cut(s) 791, 858
StyI CCWWGG 2 cut(s) 570, 696
TaaI ACNGT 3 cut(s) 923, 930, 1028
TaiI ACGT 2 cut(s) 478, 772
TaqI TCGA 1 cut(s) 405
TasI AATT 7 cut(s) 6, 429, 441, 456, 746, 824, 967
TatI WGTACW 3 cut(s) 253, 541, 634
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 4 cut(s) 140, 149, 434, 880
Tru1I TTAA 4 cut(s) 263, 462, 702, 741
Tru9I TTAA 4 cut(s) 263, 462, 702, 741
TscAI CASTG 1 cut(s) 818
TseI GCWGC 3 cut(s) 74, 294, 446
TspDTI ATGAA 8 cut(s) 17, 54, 242, 345, 879, 921, 950, 969
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 1 cut(s) 824
XhoI CTCGAG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 731
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.