Rh3BG049900

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000126
Physical Location & Seq
Forward (+)
3343464 .. 3347052
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG049900.1

Sequence Viewer

Length: 2196 bp
ATGGAGAAGATGGACTCCGATTTGAAGGAATTTGAGTCGAAAGAGAGGAGTGTACGCAAACAACTGGAGACTTTACAGTCTCAATCTTCGTCTATGCTTCGGTTTTCTCTGCAGTGGAAGGAATTACAGGACCGTTTGAAGTCGACACAGGCCCAAATCCAGACCCAGTTGGAGGAGGTAAAGAGGTGCGAGGCTGAGAATGTGAGGCTGACGACGGAGGTGGAGACAAAAGCCAAGGAGTTGCGGAAAGTGGAGGAGTTGATTGATCAAGGTCATGAGGTTGGTGAATGTGGTGAAAAAGATAAGGATAGGGATAGGGAGTTGAGTGTGGAGGAAGATAGGGTTGAGGACGGTGGGAATATAATTGATTTGGTGATGAAGAGGTTGAAGGAGGCTGGGTTTGACGAGGTGAGCGAAGTGGAAGTGGCGAAGGGAGTGTTGGATAATTATTGTGGCGAAATCGAGTCGAAGAAGAGGGAGTTGAGTGTGATTTTGGGGGAGATTGAGGAGAAGAGGGAGGAGTTGGGTTTGCAAGAAGAGCAAATTAGGGTGGTGAAGAGTGTTGTTGAAGGATGTGAGAAGGAAATGAAGCAGAAAGAGGAGAAGATGAATTTGATTCAGAAATCGATAGAGGAATGCGCGAATGTGTTGGAAGAGAAGAGGGAGATTGTTAGGGAAATGAGTGAGGAAGTGGAGGAATTTCGTGTGCGTAGGAAGGAAATGGATGAGTTGAAATGTAAACTTGAGGCGAAGAAGAGTGAGCTGGAGAGATGGGCTGTGGCCCTTGCATTGAAAGAGAAACAAGTTAAATCGAAAAGTAAGGAACTTAGTTTGACTGAAAAGAGGGTCGTGGAAAGCCTCAGTGAGGTTCAGATGAAAGAAAAGGGTTTTGATGAGCAGAAAAAATTGATAGAAGAAGGTAGAAAGCATTTGGATGTAGTCTCCAATAAACTACAAATGAAAGAGTGGAGACTTCGTAAACAAGGAAAAGACCTTAAATTGGAAAAACAAGTATTGGAGTCGAATAAAAAATCCACTAAAGAACACAAACAGGGTCCGAAATCGCAAGAGGAGCCTAACGCCCTCCATTCTGAATCTGAAATAACTTGGGATGGAATAGGCTTGCAGAGATTCATGAGTGGGCAGTTGCTGAGAATAGATTTAATGGGTAGCAAAATGTCAGCTGTTCTTAAAGGCTCATCAGACCTGACTAAATTAGTGTTGGCTGCAATGCAAGGATTTCACAGGTCAAATTCAAATACGGACAGCAGGGAGATTGAATTTGATTTGGAAATTACTAGAAGGAGTTGCATTCTTTTGCTGGAGGAGCTGAAGAGTATGTCAGCACAAATTAGTCCTCCAGTGAAACAAGAAGCCATGAAGTTGGCCACTGAGTGGAAGTCTAAGATAGCAGAGACGACTAATAATAGATTAGAGATATTGGGGTTTCTGCAGCTTGTTACTACGTATGAGTTAACCTCTCTTTATGATGCAAAGGAACTTCAAAGTCTTTTAGCTTTAATTGCTCCGCTTAAACAAGCAACTGAATGCCAGGCCCTTGCTATCTCTGATAAGCCATCTGGAATCAGTATGTGTCCTCCTGTGAAAGATGAGGAACAAGAATCTTCACTGGCCAGAATTGCAGTAACTTCTTCGAATCTTCAACCAAGTGCCAACTTACATGGCAGGAATTCTCCAGGGTTCGTAAATGATCAATTGGCTTGGAAACATTCAATACTGAACACAAATTTTGTTGCTCTTGAAAAGTCATCAAATTTAAACCCAGCAAAACTTTTGTTGGATTTGATGCAAGTATCCTATGCTGGATACTGGACACAAGGAAATGCTGGTTTTGAAGCAACTGCCATGAAGAGCTTCATTTCCCTATTGGAGACTGTAAGAAGAGCCCAACCGCATGTTGGAACTCAGTTGAAAGAGGATGCAGCACAGTTAGCTATACAATGGAAAAAGAAACTGACTGATGCTGAAAATCCCCTAGATATCTTGGGTTTCTTGTTGTTTATAGCTACGTATGGGTTACTTTCTACGTTCACGACAGATGAGCTTGCAAAGCTTTTTGGGCTGATTTCTCGGCATACACATGCTTTAGAACTATGTCAGACAATTGGTTATGCACAGAAATTCCCTGGTAAGCTATTTGTGCCGACCACCATTACTATTATGATTATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

731

Amino Acids

83.22

Weight (kDa)

5.61

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 371 - 524 2e-27 Frigida-like protein
Frigida PF07899 567 - 717 3.5e-22 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 1395
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 641
AciI CCGC 3 cut(s) 244, 1529, 1913
AcoI YGGCCR 2 cut(s) 1386, 1632
AcsI RAATTY 9 cut(s) 29, 610, 698, 1252, 1280, 1690, 1747, 1774, 2141
AcuI CTGAAG 1 cut(s) 1352
AdeI CACNNNGTG 1 cut(s) 1395
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 5 cut(s) 172, 865, 1000, 1395, 1919
AjnI CCWGG 3 cut(s) 1551, 1696, 2146
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
Alw26I GTCTC 7 cut(s) 62, 84, 218, 946, 964, 1409, 1886
AlwNI CAGNNNCTG 1 cut(s) 1150
AoxI GGCC 5 cut(s) 150, 780, 1386, 1554, 1632
ApeKI GCWGC 3 cut(s) 1226, 1453, 1943
ApoI RAATTY 9 cut(s) 29, 610, 698, 1252, 1280, 1690, 1747, 1774, 2141
Asp700I GAANNNNTTC 1 cut(s) 1874
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 5 cut(s) 130, 151, 781, 1055, 1555
AsuHPI GGTGA 5 cut(s) 296, 305, 385, 421, 565
AsuII TTCGAA 1 cut(s) 1655
AvaII GGWCC 2 cut(s) 130, 1055
BalI TGGCCA 2 cut(s) 1388, 1634
BanII GRGCYC 1 cut(s) 1909
BbvI GCAGC 3 cut(s) 1213, 1465, 1955
BccI CCATC 4 cut(s) 4, 765, 1106, 1585
BciT130I CCWGG 3 cut(s) 1553, 1698, 2148
BciVI GTATCC 2 cut(s) 1820, 1825
BclI TGATCA 2 cut(s) 265, 1711
BcoDI GTCTC 7 cut(s) 62, 84, 218, 946, 964, 1409, 1886
BfaI CTAG 3 cut(s) 1299, 1997, 2194
BfmI CTRYAG 2 cut(s) 110, 1451
BfuI GTATCC 2 cut(s) 1820, 1825
BisI GCNGC 3 cut(s) 1227, 1454, 1944
BlsI GCNGC 3 cut(s) 1228, 1455, 1945
Bme1390I CCNGG 3 cut(s) 1553, 1698, 2148
Bme18I GGWCC 2 cut(s) 130, 1055
BmgT120I GGNCC 5 cut(s) 130, 151, 781, 1055, 1555
BmiI GGNNCC 2 cut(s) 1056, 1074
BmrFI CCNGG 3 cut(s) 1553, 1698, 2148
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 4 cut(s) 1480, 1797, 1930, 1972
BmuI ACTGGG 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 1463, 1495
BpmI CTGGAG 5 cut(s) 86, 785, 1343, 1344, 1680
Bpu14I TTCGAA 1 cut(s) 1655
BpuEI CTTGAG 1 cut(s) 764
Bsa29I ATCGAT 1 cut(s) 626
BsaAI YACGTR 2 cut(s) 1467, 2031
BsaJI CCNNGG 3 cut(s) 234, 1697, 2146
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 961, 991
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 865, 1000, 1395, 1919
Bse1I ACTGG 5 cut(s) 69, 166, 1361, 1635, 1835
Bse3DI GCAATG 1 cut(s) 1236
BseBI CCWGG 3 cut(s) 1553, 1698, 2148
BseCI ATCGAT 1 cut(s) 626
BseDI CCNNGG 3 cut(s) 234, 1697, 2146
BseGI GGATG 5 cut(s) 578, 730, 940, 1117, 1945
BseLI CCNNNNNNNGG 5 cut(s) 172, 865, 1000, 1395, 1919
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 5 cut(s) 186, 874, 1142, 1383, 1940
BseNI ACTGG 5 cut(s) 69, 166, 1361, 1635, 1835
BseRI GAGGAG 8 cut(s) 61, 188, 269, 521, 533, 614, 1085, 1340
BseXI GCAGC 3 cut(s) 1213, 1465, 1955
BseYI CCCAGC 2 cut(s) 395, 1783
Bsh1236I CGCG 1 cut(s) 641
BshFI GGCC 5 cut(s) 152, 782, 1388, 1556, 1634
BshVI ATCGAT 1 cut(s) 626
BslI CCNNNNNNNGG 5 cut(s) 172, 865, 1000, 1395, 1919
BsmAI GTCTC 7 cut(s) 62, 84, 218, 946, 964, 1409, 1886
BsmBI CGTCTC 1 cut(s) 1409
BsmI GAATGC 3 cut(s) 641, 1311, 1553
BsnI GGCC 5 cut(s) 152, 782, 1388, 1556, 1634
Bsp119I TTCGAA 1 cut(s) 1655
Bsp1286I GDGCHC 1 cut(s) 1909
Bsp143I GATC 2 cut(s) 265, 1711
BspACI CCGC 3 cut(s) 244, 1529, 1913
BspANI GGCC 5 cut(s) 152, 782, 1388, 1556, 1634
BspCNI CTCAG 5 cut(s) 187, 873, 1143, 1384, 1939
BspDI ATCGAT 1 cut(s) 626
BspFNI CGCG 1 cut(s) 641
BspHI TCATGA 2 cut(s) 274, 1134
BspLI GGNNCC 2 cut(s) 1056, 1074
BspMAI CTGCAG 2 cut(s) 114, 1455
BspQI GCTCTTC 3 cut(s) 531, 1865, 1897
BspT104I TTCGAA 1 cut(s) 1655
BsrDI GCAATG 1 cut(s) 1236
BsrI ACTGG 5 cut(s) 69, 166, 1361, 1635, 1835
BssECI CCNNGG 3 cut(s) 234, 1697, 2146
BssMI GATC 2 cut(s) 265, 1711
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 3 cut(s) 1553, 1698, 2148
Bst4CI ACNGT 5 cut(s) 78, 134, 353, 1897, 1950
BstBAI YACGTR 2 cut(s) 1467, 2031
BstBI TTCGAA 1 cut(s) 1655
BstC8I GCNNGC 2 cut(s) 1124, 2067
BstDEI CTNAG 7 cut(s) 195, 827, 860, 1151, 1392, 1404, 1926
BstENI CCTNNNNNAGG 1 cut(s) 863
BstF5I GGATG 5 cut(s) 578, 730, 940, 1117, 1945
BstFNI CGCG 1 cut(s) 641
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 2 cut(s) 268, 1714
BstMAI GTCTC 7 cut(s) 62, 84, 218, 946, 964, 1409, 1886
BstMBI GATC 2 cut(s) 265, 1711
BstMWI GCNNNNNNNGC 9 cut(s) 538, 1072, 1327, 1523, 1640, 1952, 2071, 2080, 2161
BstNI CCWGG 3 cut(s) 1553, 1698, 2148
BstNSI RCATGY 2 cut(s) 1919, 2105
BstSCI CCNGG 3 cut(s) 1551, 1696, 2146
BstSFI CTRYAG 2 cut(s) 110, 1451
BstSNI TACGTA 2 cut(s) 1467, 2031
BstUI CGCG 1 cut(s) 641
BstV1I GCAGC 3 cut(s) 1213, 1465, 1955
BstXI CCANNNNNNTGG 1 cut(s) 1384
Bsu15I ATCGAT 1 cut(s) 626
BsuI GTATCC 2 cut(s) 1820, 1825
BsuRI GGCC 5 cut(s) 152, 782, 1388, 1556, 1634
BsuTUI ATCGAT 1 cut(s) 626
BtsCI GGATG 5 cut(s) 578, 730, 940, 1117, 1945
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 5 cut(s) 119, 868, 1368, 1389, 1628
Cac8I GCNNGC 2 cut(s) 1124, 2067
CaiI CAGNNNCTG 1 cut(s) 1150
CciI TCATGA 2 cut(s) 274, 1134
CfoI GCGC 1 cut(s) 641
Cfr13I GGNCC 5 cut(s) 130, 151, 781, 1055, 1555
ClaI ATCGAT 1 cut(s) 626
Csp6I GTAC 1 cut(s) 53
CviAII CATG 7 cut(s) 275, 1135, 1378, 1682, 1867, 1916, 2102
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 7 cut(s) 195, 827, 860, 1151, 1392, 1404, 1926
DpnI GATC 2 cut(s) 267, 1713
DpnII GATC 2 cut(s) 265, 1711
DraI TTTAAA 1 cut(s) 1779
DraIII CACNNNGTG 1 cut(s) 1395
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 1386, 1632
Eco105I TACGTA 2 cut(s) 1467, 2031
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 1909
Eco32I GATATC 1 cut(s) 2002
Eco47I GGWCC 2 cut(s) 130, 1055
Eco57I CTGAAG 1 cut(s) 1352
EcoNI CCTNNNNNAGG 1 cut(s) 863
EcoO109I RGGNCCY 1 cut(s) 1555
EcoRI GAATTC 1 cut(s) 1690
EcoRII CCWGG 3 cut(s) 1551, 1696, 2146
EcoRV GATATC 1 cut(s) 2002
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 1909
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 1409
FaeI CATG 7 cut(s) 278, 1138, 1381, 1685, 1870, 1919, 2105
FatI CATG 7 cut(s) 274, 1134, 1377, 1681, 1866, 1915, 2101
FbaI TGATCA 2 cut(s) 265, 1711
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 3 cut(s) 1227, 1454, 1944
FokI GGATG 5 cut(s) 585, 737, 947, 1124, 1952
FriOI GRGCYC 1 cut(s) 1909
Fsp4HI GCNGC 3 cut(s) 1227, 1454, 1944
FspBI CTAG 3 cut(s) 1299, 1997, 2194
GlaI GCGC 1 cut(s) 640
GluI GCNGC 3 cut(s) 1227, 1454, 1944
GsaI CCCAGC 2 cut(s) 399, 1787
GsuI CTGGAG 5 cut(s) 86, 785, 1343, 1344, 1680
HaeIII GGCC 5 cut(s) 152, 782, 1388, 1556, 1634
HhaI GCGC 1 cut(s) 641
Hin1II CATG 7 cut(s) 278, 1138, 1381, 1685, 1870, 1919, 2105
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HincII GTYRAC 2 cut(s) 144, 1476
HindII GTYRAC 2 cut(s) 144, 1476
HindIII AAGCTT 1 cut(s) 2072
HpaI GTTAAC 1 cut(s) 1476
HphI GGTGA 5 cut(s) 296, 305, 385, 421, 565
Hpy166II GTNNAC 6 cut(s) 53, 144, 740, 980, 1476, 2052
Hpy188I TCNGA 9 cut(s) 19, 621, 873, 1059, 1093, 1099, 1204, 1570, 2121
Hpy188III TCNNGA 6 cut(s) 160, 275, 1135, 1581, 1760, 2053
Hpy8I GTNNAC 6 cut(s) 53, 144, 740, 980, 1476, 2052
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 9 cut(s) 19, 112, 382, 424, 563, 574, 709, 911, 1296
HpyCH4III ACNGT 5 cut(s) 78, 134, 353, 1897, 1950
HpyCH4IV ACGT 3 cut(s) 1466, 2030, 2048
HpyF10VI GCNNNNNNNGC 9 cut(s) 538, 1072, 1327, 1523, 1640, 1952, 2071, 2080, 2161
HpyF3I CTNAG 7 cut(s) 195, 827, 860, 1151, 1392, 1404, 1926
HpySE526I ACGT 3 cut(s) 1466, 2030, 2048
Hsp92II CATG 7 cut(s) 278, 1138, 1381, 1685, 1870, 1919, 2105
HspAI GCGC 1 cut(s) 639
Ksp22I TGATCA 2 cut(s) 265, 1711
KspAI GTTAAC 1 cut(s) 1476
Kzo9I GATC 2 cut(s) 265, 1711
LguI GCTCTTC 3 cut(s) 531, 1865, 1897
LmnI GCTCC 3 cut(s) 1072, 1327, 1531
Lsp1109I GCAGC 3 cut(s) 1213, 1465, 1955
LweI GCATC 4 cut(s) 1480, 1797, 1930, 1972
MaeI CTAG 3 cut(s) 1299, 1997, 2194
MaeII ACGT 3 cut(s) 1466, 2030, 2048
MaeIII GTNAC 3 cut(s) 1459, 1645, 2037
MalI GATC 2 cut(s) 267, 1713
MboI GATC 2 cut(s) 265, 1711
MfeI CAATTG 2 cut(s) 1715, 2124
MhlI GDGCHC 1 cut(s) 1909
MlsI TGGCCA 2 cut(s) 1388, 1634
MluNI TGGCCA 2 cut(s) 1388, 1634
MlyI GAGTC 4 cut(s) 8, 44, 473, 1028
MmeI TCCRAC 5 cut(s) 150, 420, 630, 1779, 1900
Mox20I TGGCCA 2 cut(s) 1388, 1634
MroXI GAANNNNTTC 1 cut(s) 1874
MscI TGGCCA 2 cut(s) 1388, 1634
MseI TTAA 8 cut(s) 807, 996, 1163, 1191, 1475, 1520, 1533, 1778
MslI CAYNNNNRTG 2 cut(s) 933, 2100
Msp20I TGGCCA 2 cut(s) 1388, 1634
MspA1I CMGCKG 1 cut(s) 1184
MspR9I CCNGG 3 cut(s) 1553, 1698, 2148
MunI CAATTG 2 cut(s) 1715, 2124
Mva1269I GAATGC 3 cut(s) 641, 1311, 1553
MvaI CCWGG 3 cut(s) 1553, 1698, 2148
MvnI CGCG 1 cut(s) 641
MwoI GCNNNNNNNGC 9 cut(s) 538, 1072, 1327, 1523, 1640, 1952, 2071, 2080, 2161
NdeII GATC 2 cut(s) 265, 1711
NlaIII CATG 7 cut(s) 278, 1138, 1381, 1685, 1870, 1919, 2105
NlaIV GGNNCC 2 cut(s) 1056, 1074
NmeAIII GCCGAG 1 cut(s) 2071
NspI RCATGY 2 cut(s) 1919, 2105
NspV TTCGAA 1 cut(s) 1655
PagI TCATGA 2 cut(s) 274, 1134
PciSI GCTCTTC 3 cut(s) 531, 1865, 1897
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PctI GAATGC 3 cut(s) 641, 1311, 1553
PdmI GAANNNNTTC 1 cut(s) 1874
PfeI GAWTC 6 cut(s) 616, 1094, 1131, 1584, 1622, 1657
PflMI CCANNNNNTGG 1 cut(s) 1395
PkrI GCNGC 3 cut(s) 1228, 1455, 1945
PleI GAGTC 4 cut(s) 8, 43, 472, 1027
PpsI GAGTC 4 cut(s) 8, 43, 472, 1027
Ppu21I YACGTR 2 cut(s) 1467, 2031
Psp6I CCWGG 3 cut(s) 1551, 1696, 2146
PspFI CCCAGC 2 cut(s) 395, 1783
PspGI CCWGG 3 cut(s) 1551, 1696, 2146
PspN4I GGNNCC 2 cut(s) 1056, 1074
PspPI GGNCC 5 cut(s) 130, 151, 781, 1055, 1555
PstI CTGCAG 2 cut(s) 114, 1455
PstNI CAGNNNCTG 1 cut(s) 1150
PvuII CAGCTG 1 cut(s) 1184
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 933, 2100
SalI GTCGAC 1 cut(s) 142
SapI GCTCTTC 3 cut(s) 531, 1865, 1897
SaqAI TTAA 8 cut(s) 807, 996, 1163, 1191, 1475, 1520, 1533, 1778
SatI GCNGC 3 cut(s) 1227, 1454, 1944
Sau3AI GATC 2 cut(s) 265, 1711
Sau96I GGNCC 5 cut(s) 130, 151, 781, 1055, 1555
SchI GAGTC 4 cut(s) 8, 44, 473, 1028
ScrFI CCNGG 3 cut(s) 1553, 1698, 2148
SduI GDGCHC 1 cut(s) 1909
SfaNI GCATC 4 cut(s) 1480, 1797, 1930, 1972
SfcI CTRYAG 2 cut(s) 110, 1451
SfuI TTCGAA 1 cut(s) 1655
SinI GGWCC 2 cut(s) 130, 1055
SmiMI CAYNNNNRTG 2 cut(s) 933, 2100
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SnaBI TACGTA 2 cut(s) 1467, 2031
SsiI CCGC 3 cut(s) 244, 1529, 1913
SspMI CTAG 3 cut(s) 1299, 1997, 2194
StyD4I CCNGG 3 cut(s) 1551, 1696, 2146
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 5 cut(s) 78, 134, 353, 1897, 1950
TaiI ACGT 3 cut(s) 1469, 2033, 2051
TaqI TCGA 8 cut(s) 38, 143, 462, 467, 626, 812, 1022, 1655
TfiI GAWTC 6 cut(s) 616, 1094, 1131, 1584, 1622, 1657
Tru1I TTAA 8 cut(s) 807, 996, 1163, 1191, 1475, 1520, 1533, 1778
Tru9I TTAA 8 cut(s) 807, 996, 1163, 1191, 1475, 1520, 1533, 1778
TscAI CASTG 5 cut(s) 119, 868, 1368, 1396, 1635
TseI GCWGC 3 cut(s) 1226, 1453, 1943
TspDTI ATGAA 9 cut(s) 392, 602, 623, 890, 974, 1123, 1394, 1867, 1883
TspGWI ACGGA 2 cut(s) 230, 1277
TspRI CASTG 5 cut(s) 119, 868, 1368, 1396, 1635
Van91I CCANNNNNTGG 1 cut(s) 1395
VpaK11BI GGWCC 2 cut(s) 130, 1055
XagI CCTNNNNNAGG 1 cut(s) 863
XapI RAATTY 9 cut(s) 29, 610, 698, 1252, 1280, 1690, 1747, 1774, 2141
XceI RCATGY 2 cut(s) 1919, 2105
XcmI CCANNNNNNNNNTGG 1 cut(s) 1916
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 1874
XspI CTAG 3 cut(s) 1299, 1997, 2194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.