RchiOBHm_Chr4g0411451

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000126
Physical Location & Seq
Reverse (-)
35319504 .. 35320929
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38225

Sequence Viewer

Length: 840 bp
ATGCTAGGTTCAAATGTATTCATTGTACTAACATATATATATATATATATATATATATATATTGTGCATTTTGTTGCTTCTTATTGCAATTTCACAGCAAGTAATGTCATTTCTTCCCTTATCGAAGTTGAGGAACCAGAATCTTTACTAGCCAAAAAAGTAGCAGTTTCATCTTCTTCAAATCCTCAATTAAGTGACTCCTTAAAGGCAAGGAATTTGCATGGACAAGTGACTGGGAATGATTTGCTTGAGAACCAATTTTTTGATAATCTGCAAAGTTCATTAGACCCTGCAAAACTTGTGTTGGATTGGATGCAAACTTATCTCTCACAATATTGGACAAAAGGTGATGTTGGTTTTGAAGTAACTTCGATCAAAACCTACATTTCCCTATTAGAGCAGCTACTGAGACTCTCACCACATGCCGGAGCTCGGGTGAAAGGGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAATATGAGAGCTGATACAGAGAATTCCTTGGAAATTTTGGGATTTTTGCACTTCCTAGCTACATTTGGGTTGCTTTATACTCTAAATGTAGATGAAATTGTAAAGCTTCTTGGGATGATTTCTCAGCATAAAGAGGCCCTAGAATTATGTCAGACACTTGATTTTGCAGATGAAATCCCTGAGTTTATCGGGACTCTTGTTGAAAGGAAGCAGCTGATGGAAGCCGTTGGACTGATTTGTACCTTCAAGTTAAGTGACAAGTTTCCTCCCGGACCACTCCTAAAAGAATACATGGAGGAACAAATAAAGTGTTGCAGAAATGCTTACAAGAGAACCAAGTTACATAACGAAAAGGTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

279

Amino Acids

31.64

Weight (kDa)

5.58

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 63 - 270 2.3e-42 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 214, 499, 510
AfaI GTAC 2 cut(s) 27, 718
AfiI CCNNNNNNNGG 2 cut(s) 425, 432
AgsI TTSAA 5 cut(s) 12, 180, 362, 680, 724
AluBI AGCT 6 cut(s) 403, 431, 488, 536, 583, 691
AluI AGCT 6 cut(s) 403, 431, 488, 536, 583, 691
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 2 cut(s) 400, 688
ApoI RAATTY 3 cut(s) 214, 499, 510
AspS9I GGNCC 3 cut(s) 613, 749, 832
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 3 cut(s) 359, 408, 448
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 2 cut(s) 749, 832
BanII GRGCYC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 412, 700
BccI CCATC 1 cut(s) 688
BceAI ACGGC 1 cut(s) 686
BcnI CCSGG 1 cut(s) 747
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 5 cut(s) 5, 149, 533, 617, 838
BisI GCNGC 2 cut(s) 401, 689
BlsI GCNGC 2 cut(s) 402, 690
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 2 cut(s) 749, 832
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 3 cut(s) 613, 749, 832
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 747
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 2 cut(s) 303, 436
BmuI ACTGGG 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 747
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 432
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 3 cut(s) 318, 451, 597
BseLI CCNNNNNNNGG 2 cut(s) 425, 432
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 398, 614, 648
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 412, 700
BshFI GGCC 1 cut(s) 614
BsiHKAI GWGCWC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 2 cut(s) 426, 747
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 2 cut(s) 425, 432
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 682
BsnI GGCC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 1 cut(s) 372
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 3 cut(s) 399, 613, 649
BspLI GGNNCC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 504
BstDEI CTNAG 3 cut(s) 407, 600, 657
BstF5I GGATG 3 cut(s) 318, 451, 597
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 412, 700
BsuRI GGCC 1 cut(s) 614
BtsCI GGATG 3 cut(s) 318, 451, 597
CaiI CAGNNNCTG 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 613, 749, 832
Csp6I GTAC 2 cut(s) 26, 717
CviAII CATG 3 cut(s) 221, 422, 769
CviJI RGCY 9 cut(s) 152, 403, 431, 488, 536, 583, 614, 691, 701
CviKI_1 RGCY 9 cut(s) 152, 403, 431, 488, 536, 583, 614, 691, 701
CviQI GTAC 2 cut(s) 26, 717
DdeI CTNAG 3 cut(s) 407, 600, 657
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 749, 832
Eco53kI GAGCTC 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 431
EcoO109I RGGNCCY 2 cut(s) 613, 832
EcoRI GAATTC 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 3 cut(s) 224, 425, 772
FaqI GGGAC 1 cut(s) 682
FatI CATG 3 cut(s) 220, 421, 768
Fnu4HI GCNGC 2 cut(s) 401, 689
FokI GGATG 3 cut(s) 325, 458, 604
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 401, 689
FspBI CTAG 5 cut(s) 5, 149, 533, 617, 838
GluI GCNGC 2 cut(s) 401, 689
HaeIII GGCC 1 cut(s) 614
HapII CCGG 2 cut(s) 426, 747
Hin1II CATG 3 cut(s) 224, 425, 772
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 4 cut(s) 140, 197, 411, 670
HpaII CCGG 2 cut(s) 426, 747
HphI GGTGA 3 cut(s) 359, 408, 448
Hpy188I TCNGA 1 cut(s) 630
Hpy188III TCNNGA 1 cut(s) 667
HpyAV CCTTC 1 cut(s) 730
HpyF3I CTNAG 3 cut(s) 407, 600, 657
Hsp92II CATG 3 cut(s) 224, 425, 772
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 6 cut(s) 150, 219, 303, 439, 669, 760
Lsp1109I GCAGC 2 cut(s) 412, 700
LweI GCATC 2 cut(s) 303, 436
MaeI CTAG 5 cut(s) 5, 149, 533, 617, 838
MaeIII GTNAC 5 cut(s) 194, 229, 364, 731, 816
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 3 cut(s) 105, 165, 168
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 8 cut(s) 88, 188, 214, 257, 499, 510, 573, 620
MlyI GAGTC 3 cut(s) 191, 405, 664
MmeI TCCRAC 2 cut(s) 285, 685
MnlI CCTC 5 cut(s) 124, 195, 604, 753, 766
MseI TTAA 3 cut(s) 191, 203, 728
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 2 cut(s) 426, 747
MspR9I CCNGG 1 cut(s) 747
NciI CCSGG 1 cut(s) 747
NdeII GATC 1 cut(s) 372
NlaIII CATG 3 cut(s) 224, 425, 772
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 3 cut(s) 194, 229, 731
NspI RCATGY 1 cut(s) 425
PfeI GAWTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 2 cut(s) 402, 690
PleI GAGTC 3 cut(s) 191, 405, 664
PpsI GAGTC 3 cut(s) 191, 405, 664
PpuMI RGGWCCY 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 3 cut(s) 613, 749, 832
PspPPI RGGWCCY 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 27, 718
RsaNI GTAC 2 cut(s) 26, 717
SacI GAGCTC 1 cut(s) 433
SaqAI TTAA 3 cut(s) 191, 203, 728
SatI GCNGC 2 cut(s) 401, 689
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 3 cut(s) 613, 749, 832
SchI GAGTC 3 cut(s) 191, 405, 664
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 2 cut(s) 303, 436
SinI GGWCC 2 cut(s) 749, 832
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 8 cut(s) 88, 188, 214, 257, 499, 510, 573, 620
SspI AATATT 1 cut(s) 335
SspMI CTAG 5 cut(s) 5, 149, 533, 617, 838
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 1 cut(s) 504
TaqI TCGA 2 cut(s) 123, 371
TasI AATT 8 cut(s) 88, 188, 214, 257, 499, 510, 573, 620
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 191, 203, 728
Tru9I TTAA 3 cut(s) 191, 203, 728
TseFI GTSAC 3 cut(s) 194, 229, 731
TseI GCWGC 2 cut(s) 400, 688
Tsp45I GTSAC 3 cut(s) 194, 229, 731
TspDTI ATGAA 6 cut(s) 10, 159, 270, 467, 585, 663
VpaK11BI GGWCC 2 cut(s) 749, 832
XapI RAATTY 3 cut(s) 214, 499, 510
XceI RCATGY 1 cut(s) 425
XspI CTAG 5 cut(s) 5, 149, 533, 617, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.