Rroxscaffold_6G00430160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000126
Physical Location & Seq
Forward (+)
50362890 .. 50367354
4465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430160.1

Sequence Viewer

Length: 2919 bp
ATGACGGAAGCCGGAGCGGGTTTTAACCGGGTCCGGGCCGGGTTCCGGGGGCTAATAGAGCTGGCGAAGGAGCTGGAACGTGAAGAGATGAAGCTGCGGCGTGATTCGGAAGCGAAAGCGATGGAGATTGAAGAAGGTAAGAGCCAGCTGAACTTGCTTAAATTAAAGATTGAGGAAAAGAATAGAGAGGTTTGTGATAGAGAGAAGCGAATAGATGAGCTTGAGAAGATGGTTAGGGTGAATGATGATGTGAAGTTGAGAGAGGAGGAGTTGAAGCGTTTAGAGGAGTTGATTGCGAAATGTGATGAGGAGGTGAGGTTGAAGAAGGGGAGCATTAGTTTGATTCAGAAATCGATGATGCAATGCTCGTATACGTTGGAAGCGAGGGAGGAGGAGATCAGGGAGAGTAATGTGGCTTTTGGTTTGGTGAAGAAGGCTATGGAGGAGTGGTGCTGTAAAGTTGAGATGAAGGAGAGGGAGCTGGAGAGGTGTGTGGCGAAACTGGAATTGAAAGAAGAACAAGTGGAGAAGAAAATTGAGGAACTTGAGTTGATTGAGAAGAGGGTCAAGGATTGCCTTGATGATGTGGAGTTGAAAGTAGAGCATTTTGATTCAGTTGAAAAATCGATACAGGAAGAGAGACAGCAGTTGGATGCACTGCAAGAGTCGGTGCGTGAGGGCGAAAGGAATTTGGATTCAGTTCGAAACGCAGCAGAGGAGCGTGAGAAGGTTTTGGACTCGGTAGGCCAGGGACTTGAAATGAAAGAGAGGGAACTCGAAGAGCAGGCCAGTGAGCTTGAGTTTAAAGAGAGACTAGTTGAATTGAGAGTTGAGGAACTTAATTCAAAGGATAAGAGGGTCAATGAACGCCTCAATGAGTTGGCAGCAGAGCGTGAAAAGCAGTTAGATTCACTCCAAACATCGGTGCAAGATCGTGAAAATAATTTGTTTTCACTTCAAAAATCGGTACAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTGATTCTCAAAGTAAGGCTAAGCATTTGGAACCTAACCCTGCTGCTAAAAATGCTAGTGTTGTTTCATCTACAAGTGATCAATCCTGGATCAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACCCCGCAAAATTGGTTTTGGATGCAATGCAAGGGTTTTATCCGTCAAATCTTACTGGGGAAAACAGAGAGTTTGAGTCACATTTGAGGGTTGTAAGAAAGAGTTGTATTCTTTTGCTACAGGAGTTAAAGAGAATGTCACCACTAATTAATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGCTGATTGGAAAGAGAAGATGGCAGTTACCGCTGATATTAGTTGGGAGGCTTTGGGCTTTTTGCGGCTTATCACTACGTATGAATTGACAAGTATTTATGATTTGAGGGAGCTTCGAAGTCTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCACAGATAAGGCACCTGATTCTGAATGGACATGTCTGGTGGTGCCTCCTGTGCTCTTCTTAGCATTCCATATCATTGTAGGGACGAATGTTGTTTCTTCCATTGTCAAGACTGAGCGATCAGAATCTTCGCTGGCTAGAAATGAAGCAACTCTTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTGTTCCTTCCATTGCCAAGACTGAGGGATCCAAATCTTTTGGGGCTAGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGAATCTTTGCTGGCTAGAAATGAAGCAACTCTTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGAGGGACCCAAATCTTTTGGGGCTAGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGGATCTTCTCTCGCTAGAAATGCAGCAACTCTATCTTCACCGAATAATGCTTTACAGAAAAATCTGTTGGTCACTCTTAAATCATCATCAGACCCTGCAAAACTTGTGTTGGATTCGATGCAAGGGTCTTTGATGTATTACTGGACAAATGGAGATATTAGTTCCAAAGAAAAGGTTGTATCTGGTAACATTACTCTATTGAAGATTCTAATGGGAATATCAACACATTTTGGACCTCATCTGAAAGAAAATGCTACAAATCTAGCATCCCAGTGGAAAGAAAAGTTGAGAGCTGATACTGAAGATTCATTGGAGAGTTTGGGATATTTGCTGTTTATAGCTATGTATGGATTGCTTGGAACCTTACATGAAGATGAGATTGTAATGCTTCTTAGAAGGGTTTCGCAGCATAAGCGGTCTCTGGAGTTATGTCAGACACATGGTTTTGCAGATTATATCCCTGCTCCCCCAGTGCCACTCTTAAAAGAACATGTGGATGATGTAATGATGTGTTCCGAAGTAATTTGCAGGTCACAGATGATACCTGATGAAAAGGATAAGGCTCTGGATGGTAAAAGAGCTGATCTCAGAGCTGCCATTCAATGCATCAAAGATTACAACCTCGAGTCTGAATACCCGTCCAAGACTGTTGAATTGCAAATAGTTCAATTTGATGAAATGCGCGAGGAAAAATGGAGAAGTTTGGAACCATCTCTGGTACCCAAAGTTGAACAAGAAGAGAGAAAAAGGAAGAAGCCTTGTAGTAGCTCTTCTGCCTCAAAGTTACAACCAGGAAAGGTGCCAAAAATAAAATTCGTCTTCAGTGGTTCGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

972

Amino Acids

110.17

Weight (kDa)

5.47

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 384 - 549 1.8e-34 Frigida-like protein
Frigida PF07899 708 - 847 2.2e-21 Frigida-like protein
Frigida PF07899 849 - 927 1.9e-08 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2598
Acc65I GGTACC 1 cut(s) 2797
AccB1I GGYRCC 4 cut(s) 1639, 1669, 2797, 2878
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 371
AccII CGCG 1 cut(s) 2763
AciI CCGC 6 cut(s) 17, 97, 1269, 1479, 1513, 2494
AclWI GGATC 4 cut(s) 1169, 1845, 1858, 2089
AcsI RAATTY 2 cut(s) 688, 2891
AcuI CTGAAG 2 cut(s) 2400, 2884
AfaI GTAC 2 cut(s) 969, 2799
AfiI CCNNNNNNNGG 3 cut(s) 34, 45, 922
AflIII ACRYGT 2 cut(s) 1658, 2569
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 4 cut(s) 747, 1157, 2077, 2869
AjuI GAANNNNNNNTTGG 2 cut(s) 2129, 2161
Alw21I GWGCWC 1 cut(s) 1683
Alw26I GTCTC 4 cut(s) 634, 805, 2502, 2905
AlwI GGATC 4 cut(s) 1169, 1845, 1858, 2089
AlwNI CAGNNNCTG 1 cut(s) 2174
Ama87I CYCGRG 1 cut(s) 2702
AoxI GGCC 4 cut(s) 36, 745, 786, 1041
ApoI RAATTY 2 cut(s) 688, 2891
AseI ATTAAT 1 cut(s) 1413
Asp700I GAANNNNTTC 1 cut(s) 2479
Asp718I GGTACC 1 cut(s) 2797
AspLEI GCGC 1 cut(s) 2763
AspS9I GGNCC 6 cut(s) 31, 36, 1910, 2015, 2075, 2312
AsuC2I CCSGG 4 cut(s) 29, 35, 40, 47
AsuHPI GGTGA 8 cut(s) 250, 325, 439, 1395, 1435, 1884, 2049, 2109
AsuII TTCGAA 2 cut(s) 703, 1564
AvaI CYCGRG 1 cut(s) 2702
AvaII GGWCC 5 cut(s) 31, 1910, 2015, 2075, 2312
AxyI CCTNAGG 1 cut(s) 1419
BaeGI GKGCMC 1 cut(s) 1621
BamHI GGATCC 1 cut(s) 1850
BanI GGYRCC 4 cut(s) 1639, 1669, 2797, 2878
BarI GAAGNNNNNNTAC 2 cut(s) 2833, 2865
BbsI GAAGAC 2 cut(s) 1562, 2890
Bbv12I GWGCWC 1 cut(s) 1683
BbvCI CCTCAGC 2 cut(s) 1905, 2070
BccI CCATC 7 cut(s) 115, 223, 998, 1166, 1462, 2642, 2797
BciT130I CCWGG 4 cut(s) 749, 1159, 2079, 2871
BclI TGATCA 1 cut(s) 1150
BcnI CCSGG 4 cut(s) 29, 35, 40, 47
BcoDI GTCTC 4 cut(s) 634, 805, 2502, 2905
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 8 cut(s) 815, 1128, 1764, 1869, 1929, 2034, 2094, 2342
BfmI CTRYAG 1 cut(s) 1382
BfuAI ACCTGC 1 cut(s) 2598
BlpI GCTNAGC 1 cut(s) 1092
Bme1390I CCNGG 8 cut(s) 29, 35, 40, 47, 749, 1159, 2079, 2871
Bme18I GGWCC 5 cut(s) 31, 1910, 2015, 2075, 2312
BmeT110I CYCGRG 1 cut(s) 2702
BmgT120I GGNCC 6 cut(s) 31, 36, 1910, 2015, 2075, 2312
BmrFI CCNGG 8 cut(s) 29, 35, 40, 47, 749, 1159, 2079, 2871
BmrI ACTGGG 3 cut(s) 1329, 2344, 2543
BmsI GCATC 7 cut(s) 348, 643, 1265, 1276, 2187, 2354, 2694
BmuI ACTGGG 3 cut(s) 1329, 2344, 2543
BpiI GAAGAC 2 cut(s) 1562, 2890
BplI GAGNNNNNCTC 2 cut(s) 2649, 2681
BpmI CTGGAG 2 cut(s) 503, 2522
Bpu10I CCTNAGC 2 cut(s) 1905, 2070
Bpu1102I GCTNAGC 1 cut(s) 1092
Bpu14I TTCGAA 2 cut(s) 703, 1564
BpuEI CTTGAG 3 cut(s) 242, 566, 818
BpuMI CCSGG 4 cut(s) 29, 35, 40, 47
Bsa29I ATCGAT 2 cut(s) 353, 626
BsaAI YACGTR 1 cut(s) 1527
BsaBI GATNNNNATC 2 cut(s) 1750, 1855
BsaI GGTCTC 2 cut(s) 2502, 2905
BsaJI CCNNGG 2 cut(s) 46, 748
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 45, 922
Bse1I ACTGG 6 cut(s) 507, 789, 1324, 2225, 2350, 2549
Bse21I CCTNAGG 1 cut(s) 1419
Bse3DI GCAATG 4 cut(s) 368, 1296, 1833, 1998
Bse8I GATNNNNATC 2 cut(s) 1750, 1855
BseBI CCWGG 4 cut(s) 749, 1159, 2079, 2871
BseCI ATCGAT 2 cut(s) 353, 626
BseDI CCNNGG 2 cut(s) 46, 748
BseGI GGATG 6 cut(s) 658, 1177, 1291, 2345, 2581, 2653
BseJI GATNNNNATC 2 cut(s) 1750, 1855
BseLI CCNNNNNNNGG 3 cut(s) 34, 45, 922
BseMI GCAATG 4 cut(s) 368, 1296, 1833, 1998
BseMII CTCAG 8 cut(s) 1433, 1601, 1731, 1836, 1896, 2001, 2061, 2680
BseNI ACTGG 6 cut(s) 507, 789, 1324, 2225, 2350, 2549
BseSI GKGCMC 1 cut(s) 1621
Bsh1236I CGCG 1 cut(s) 2763
BshFI GGCC 4 cut(s) 38, 747, 788, 1043
BshNI GGYRCC 4 cut(s) 1639, 1669, 2797, 2878
BshVI ATCGAT 2 cut(s) 353, 626
BsiHKAI GWGCWC 1 cut(s) 1683
BsiHKCI CYCGRG 1 cut(s) 2702
BsiSI CCGG 5 cut(s) 12, 28, 34, 39, 46
BslFI GGGAC 5 cut(s) 765, 1723, 1923, 2028, 2088
BslI CCNNNNNNNGG 3 cut(s) 34, 45, 922
BsmAI GTCTC 4 cut(s) 634, 805, 2502, 2905
BsmFI GGGAC 5 cut(s) 765, 1723, 1923, 2028, 2088
BsmI GAATGC 1 cut(s) 1691
BsnI GGCC 4 cut(s) 38, 747, 788, 1043
Bso31I GGTCTC 2 cut(s) 2502, 2905
BsoBI CYCGRG 1 cut(s) 2702
Bsp119I TTCGAA 2 cut(s) 703, 1564
Bsp1286I GDGCHC 2 cut(s) 1621, 1683
Bsp143I GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
Bsp1720I GCTNAGC 1 cut(s) 1092
BspACI CCGC 6 cut(s) 17, 97, 1269, 1479, 1513, 2494
BspANI GGCC 4 cut(s) 38, 747, 788, 1043
BspCNI CTCAG 8 cut(s) 1432, 1600, 1732, 1837, 1897, 2002, 2062, 2679
BspDI ATCGAT 2 cut(s) 353, 626
BspFNI CGCG 1 cut(s) 2763
BspHI TCATGA 1 cut(s) 1194
BspMI ACCTGC 1 cut(s) 2598
BspPI GGATC 4 cut(s) 1169, 1845, 1858, 2089
BspQI GCTCTTC 3 cut(s) 774, 1688, 2854
BspT104I TTCGAA 2 cut(s) 703, 1564
BspT107I GGYRCC 4 cut(s) 1639, 1669, 2797, 2878
BspTNI GGTCTC 2 cut(s) 2502, 2905
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 4 cut(s) 368, 1296, 1833, 1998
BsrI ACTGG 6 cut(s) 507, 789, 1324, 2225, 2350, 2549
BssECI CCNNGG 2 cut(s) 46, 748
BssMI GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
BssNAI GTATAC 1 cut(s) 372
Bst1107I GTATAC 1 cut(s) 372
Bst2UI CCWGG 4 cut(s) 749, 1159, 2079, 2871
Bst4CI ACNGT 2 cut(s) 1188, 2728
Bst6I CTCTTC 8 cut(s) 78, 554, 630, 774, 1688, 1995, 2811, 2854
BstBAI YACGTR 1 cut(s) 1527
BstBI TTCGAA 2 cut(s) 703, 1564
BstC8I GCNNGC 6 cut(s) 63, 146, 786, 1041, 1761, 1926
BstF5I GGATG 6 cut(s) 658, 1177, 1291, 2345, 2581, 2653
BstFNI CGCG 1 cut(s) 2763
BstHHI GCGC 1 cut(s) 2763
BstKTI GATC 8 cut(s) 399, 934, 1153, 1164, 1748, 1853, 2084, 2665
BstMAI GTCTC 4 cut(s) 634, 805, 2502, 2905
BstMBI GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
BstNI CCWGG 4 cut(s) 749, 1159, 2079, 2871
BstNSI RCATGY 2 cut(s) 1662, 2573
BstSCI CCNGG 8 cut(s) 27, 33, 38, 45, 747, 1157, 2077, 2869
BstSFI CTRYAG 1 cut(s) 1382
BstSLI GKGCMC 1 cut(s) 1621
BstSNI TACGTA 1 cut(s) 1527
BstUI CGCG 1 cut(s) 2763
BstV2I GAAGAC 2 cut(s) 1562, 2890
BstX2I RGATCY 2 cut(s) 1850, 2081
BstYI RGATCY 2 cut(s) 1850, 2081
BstZ17I GTATAC 1 cut(s) 372
Bsu15I ATCGAT 2 cut(s) 353, 626
Bsu36I CCTNAGG 1 cut(s) 1419
BsuRI GGCC 4 cut(s) 38, 747, 788, 1043
BsuTUI ATCGAT 2 cut(s) 353, 626
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 6 cut(s) 658, 1177, 1291, 2345, 2581, 2653
BtsI GCAGTG 2 cut(s) 656, 1443
BtsIMutI CAGTG 6 cut(s) 656, 796, 1443, 2357, 2556, 2908
BveI ACCTGC 1 cut(s) 2598
Cac8I GCNNGC 6 cut(s) 63, 146, 786, 1041, 1761, 1926
CaiI CAGNNNCTG 1 cut(s) 2174
CciI TCATGA 1 cut(s) 1194
CfoI GCGC 1 cut(s) 2763
Cfr13I GGNCC 6 cut(s) 31, 36, 1910, 2015, 2075, 2312
ClaI ATCGAT 2 cut(s) 353, 626
Csp6I GTAC 2 cut(s) 968, 2798
CviAII CATG 6 cut(s) 1168, 1195, 1659, 2447, 2519, 2570
CviQI GTAC 2 cut(s) 968, 2798
DpnI GATC 8 cut(s) 398, 933, 1152, 1163, 1747, 1852, 2083, 2664
DpnII GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
DraI TTTAAA 1 cut(s) 805
Eam1104I CTCTTC 8 cut(s) 78, 554, 630, 774, 1688, 1995, 2811, 2854
EarI CTCTTC 8 cut(s) 78, 554, 630, 774, 1688, 1995, 2811, 2854
Eco105I TACGTA 1 cut(s) 1527
Eco31I GGTCTC 2 cut(s) 2502, 2905
Eco47I GGWCC 5 cut(s) 31, 1910, 2015, 2075, 2312
Eco57I CTGAAG 2 cut(s) 2400, 2884
Eco81I CCTNAGG 1 cut(s) 1419
Eco88I CYCGRG 1 cut(s) 2702
EcoO109I RGGNCCY 1 cut(s) 2015
EcoRII CCWGG 4 cut(s) 747, 1157, 2077, 2869
EcoT22I ATGCAT 1 cut(s) 2687
FaeI CATG 6 cut(s) 1171, 1198, 1662, 2450, 2522, 2573
FalI AAGNNNNNCTT 4 cut(s) 1764, 1796, 1929, 1961
FaqI GGGAC 5 cut(s) 765, 1723, 1923, 2028, 2088
FatI CATG 6 cut(s) 1167, 1194, 1658, 2446, 2518, 2569
FauI CCCGC 2 cut(s) 10, 1276
FbaI TGATCA 1 cut(s) 1150
FblI GTMKAC 1 cut(s) 371
FokI GGATG 6 cut(s) 665, 1184, 1298, 2332, 2588, 2660
FspBI CTAG 8 cut(s) 815, 1128, 1764, 1869, 1929, 2034, 2094, 2342
GlaI GCGC 1 cut(s) 2762
GsuI CTGGAG 2 cut(s) 503, 2522
HaeIII GGCC 4 cut(s) 38, 747, 788, 1043
HapII CCGG 5 cut(s) 12, 28, 34, 39, 46
HhaI GCGC 1 cut(s) 2763
Hin1II CATG 6 cut(s) 1171, 1198, 1662, 2450, 2522, 2573
Hin6I GCGC 1 cut(s) 2761
HinP1I GCGC 1 cut(s) 2761
HindIII AAGCTT 1 cut(s) 1180
HpaII CCGG 5 cut(s) 12, 28, 34, 39, 46
HphI GGTGA 8 cut(s) 250, 325, 439, 1395, 1435, 1884, 2049, 2109
Hpy166II GTNNAC 1 cut(s) 372
Hpy188III TCNNGA 6 cut(s) 935, 1195, 1735, 2501, 2645, 2910
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 9 cut(s) 61, 128, 319, 427, 463, 721, 1839, 2004, 2469
HpyCH4III ACNGT 2 cut(s) 1188, 2728
HpyCH4IV ACGT 3 cut(s) 79, 374, 1526
HpySE526I ACGT 3 cut(s) 79, 374, 1526
Hsp92II CATG 6 cut(s) 1171, 1198, 1662, 2450, 2522, 2573
HspAI GCGC 1 cut(s) 2761
KflI GGGWCCC 1 cut(s) 2015
KpnI GGTACC 1 cut(s) 2801
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
LguI GCTCTTC 3 cut(s) 774, 1688, 2854
LmnI GCTCC 7 cut(s) 14, 70, 330, 478, 718, 1558, 2548
LweI GCATC 7 cut(s) 348, 643, 1265, 1276, 2187, 2354, 2694
MaeI CTAG 8 cut(s) 815, 1128, 1764, 1869, 1929, 2034, 2094, 2342
MaeII ACGT 3 cut(s) 79, 374, 1526
MaeIII GTNAC 7 cut(s) 1341, 1401, 1474, 2149, 2264, 2610, 2862
MalI GATC 8 cut(s) 398, 933, 1152, 1163, 1747, 1852, 2083, 2664
MbiI CCGCTC 1 cut(s) 17
MboI GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
MflI RGATCY 2 cut(s) 1850, 2081
MhlI GDGCHC 2 cut(s) 1621, 1683
MlyI GAGTC 4 cut(s) 674, 731, 1349, 2714
MmeI TCCRAC 4 cut(s) 357, 630, 969, 2169
Mph1103I ATGCAT 1 cut(s) 2687
MroXI GAANNNNTTC 1 cut(s) 2479
MslI CAYNNNNRTG 3 cut(s) 2350, 2451, 2574
MspA1I CMGCKG 4 cut(s) 148, 1244, 1451, 1481
MspI CCGG 5 cut(s) 12, 28, 34, 39, 46
MspR9I CCNGG 8 cut(s) 29, 35, 40, 47, 749, 1159, 2079, 2871
Mva1269I GAATGC 1 cut(s) 1691
MvaI CCWGG 4 cut(s) 749, 1159, 2079, 2871
MvnI CGCG 1 cut(s) 2763
NciI CCSGG 4 cut(s) 29, 35, 40, 47
NdeII GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
NlaIII CATG 6 cut(s) 1171, 1198, 1662, 2450, 2522, 2573
NmuCI GTSAC 4 cut(s) 1341, 1401, 2149, 2610
NsiI ATGCAT 1 cut(s) 2687
NspI RCATGY 2 cut(s) 1662, 2573
NspV TTCGAA 2 cut(s) 703, 1564
PaeR7I CTCGAG 1 cut(s) 2702
PagI TCATGA 1 cut(s) 1194
PciI ACATGT 2 cut(s) 1658, 2569
PciSI GCTCTTC 3 cut(s) 774, 1688, 2854
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 1691
PdmI GAANNNNTTC 1 cut(s) 2479
PfoI TCCNGGA 1 cut(s) 1157
PleI GAGTC 4 cut(s) 673, 731, 1348, 2713
PpsI GAGTC 4 cut(s) 673, 731, 1348, 2713
Ppu21I YACGTR 1 cut(s) 1527
PpuMI RGGWCCY 1 cut(s) 2015
PscI ACATGT 2 cut(s) 1658, 2569
PshBI ATTAAT 1 cut(s) 1413
Psp5II RGGWCCY 1 cut(s) 2015
Psp6I CCWGG 4 cut(s) 747, 1157, 2077, 2869
PspGI CCWGG 4 cut(s) 747, 1157, 2077, 2869
PspPI GGNCC 6 cut(s) 31, 36, 1910, 2015, 2075, 2312
PspPPI RGGWCCY 1 cut(s) 2015
PspXI VCTCGAGB 1 cut(s) 2702
PstNI CAGNNNCTG 1 cut(s) 2174
PsuI RGATCY 2 cut(s) 1850, 2081
PvuII CAGCTG 3 cut(s) 148, 1244, 1451
RsaI GTAC 2 cut(s) 969, 2799
RsaNI GTAC 2 cut(s) 968, 2798
RseI CAYNNNNRTG 3 cut(s) 2350, 2451, 2574
SapI GCTCTTC 3 cut(s) 774, 1688, 2854
Sau3AI GATC 8 cut(s) 396, 931, 1150, 1161, 1745, 1850, 2081, 2662
Sau96I GGNCC 6 cut(s) 31, 36, 1910, 2015, 2075, 2312
SchI GAGTC 4 cut(s) 674, 731, 1349, 2714
ScrFI CCNGG 8 cut(s) 29, 35, 40, 47, 749, 1159, 2079, 2871
SduI GDGCHC 2 cut(s) 1621, 1683
SfaNI GCATC 7 cut(s) 348, 643, 1265, 1276, 2187, 2354, 2694
SfcI CTRYAG 1 cut(s) 1382
Sfr274I CTCGAG 1 cut(s) 2702
SfuI TTCGAA 2 cut(s) 703, 1564
SinI GGWCC 5 cut(s) 31, 1910, 2015, 2075, 2312
SlaI CTCGAG 1 cut(s) 2702
SmiMI CAYNNNNRTG 3 cut(s) 2350, 2451, 2574
SmlI CTYRAG 4 cut(s) 221, 545, 797, 2702
SmoI CTYRAG 4 cut(s) 221, 545, 797, 2702
SnaBI TACGTA 1 cut(s) 1527
SpeI ACTAGT 1 cut(s) 814
SsiI CCGC 6 cut(s) 17, 97, 1269, 1479, 1513, 2494
SspI AATATT 2 cut(s) 1799, 1964
SspMI CTAG 8 cut(s) 815, 1128, 1764, 1869, 1929, 2034, 2094, 2342
StyD4I CCNGG 8 cut(s) 27, 33, 38, 45, 747, 1157, 2077, 2869
TaaI ACNGT 2 cut(s) 1188, 2728
TaiI ACGT 3 cut(s) 82, 377, 1529
TaqI TCGA 8 cut(s) 353, 626, 703, 777, 1564, 2195, 2703, 2909
TauI GCSGC 2 cut(s) 100, 1516
TscAI CASTG 6 cut(s) 663, 796, 1443, 2357, 2556, 2908
TseFI GTSAC 4 cut(s) 1341, 1401, 2149, 2610
Tsp45I GTSAC 4 cut(s) 1341, 1401, 2149, 2610
TspGWI ACGGA 2 cut(s) 20, 1296
TspRI CASTG 6 cut(s) 663, 796, 1443, 2357, 2556, 2908
VpaK11BI GGWCC 5 cut(s) 31, 1910, 2015, 2075, 2312
VspI ATTAAT 1 cut(s) 1413
XapI RAATTY 2 cut(s) 688, 2891
XceI RCATGY 2 cut(s) 1662, 2573
XhoI CTCGAG 1 cut(s) 2702
XmiI GTMKAC 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 2479
XspI CTAG 8 cut(s) 815, 1128, 1764, 1869, 1929, 2034, 2094, 2342
Zsp2I ATGCAT 1 cut(s) 2687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.