Rh3DG049100

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000126
Physical Location & Seq
Forward (+)
3295820 .. 3298895
3076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG049100.1

Sequence Viewer

Length: 1440 bp
ATGGAGGAATTTAAAAAATGGGTTGAAGAACGAGGAAAGGATTTGAATTCACTCTCCTCGGAACTGAAAGTTAAAGAGTGTCAACTTGAACAGGCGGCCAAAGAGCTTGAGTTGACTAAGAAACAATGTGGTGGTGTTGCTCAAGTGAAGATTGGGCCATTGGAAAAGACTCCAGAGAACAATATTACCGACGGTAGAAGTTTGCAGTTGTTCATGTATGAGCATATGAAGAGAAATGATTCAATAAGCAACAAGATCTCATCCTTTCTCCAACAAAAGTCATCAGAACCAGGAAAATTGGTTTTGGATGCAATGCAAGGGTTTTACACTTCAAATTTGACTCTCGAGAACAAGGAGTTTGATTTGGTGCTTATTAGAAGGACATGCATTATTTTGTTGGAAGAATTAAAGAGAGTCTCACCCCAAACTAATCCAGAGGTCAGAGAAGAAGCAATGAAGTTGGCCACTGAGTGGAAGGCTAAGATGAAAGTGGGGAGTGAGAACTGGTTGGAGATTTTGGGTTTTTTGCGGCTTGTTACTACTTATGGATTGACCTCTGCTTATAATGTGAAGGAGCTTCACAGTCTTCTTGATATAGTTGCTCAGCATGAACAAGCAACAGAATTATCATGGGCCCTTGCTACCACAGATAAGGCACATGTAGCCCAAAATGAAGCAACCATCTCTTCTCCAAATCTTCAGCAAGCTGCCACCACTATTGACGCAAGATATGATTACAGACCAGCATATAGCAGATCTACGCGAGTTGTTATTCAATGTATCAAAGATTACAACCTCGAGTCTGAATGTCCACCTGAAGAAATTGAATCACAAATTGCTGCGCTTGAAATTGTTAAGGAGCGGAGACGTTTAGCGTCATCTTCTCTTGTTTTGAAGGTTGAACAACAGCAAAAAGTGCTAAAAAATGTTGAAGTACAAGAACAACAAGAGCAGAAAGCCTCCAAGGGTGAACAACAAGAACAGCAAAAAGAACAGAAAACCTCTGAGGCTAAACTACAAGAAAAAGTACAGCAGAAAGCCTCCAATAAGGTTGAAGAACAACAACAGCAACAAGAGAAAAACGCCTCCAAGGTTAAACAGCAAGAACAACAAGAGCAGAAAGCCTCCAAAGTTAAACAATTGCAGAAAAAAGGGAATAAACGTCCAAACAGCACATTTGCCCCCAGGTTTGATCACCAACAGCAGTGTAAAAATAAATTTCAAAGAACATCTATATTAGCTGATAGACACCCGGACCACCCTGACTATCCGAATCCAAGTTCATCAACTTGGACACATGAAAGTAATGGATACCGTGAACAGTTTGGTACTGCCGTCAACAAGTATGAAGTTCATGCTAATTATGGACATCCTGTGCAGTTTGGTACTCCTGCCGATGGTAGCGCTATTTATGCATACGGTGGACAAATCTCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

479

Amino Acids

54.69

Weight (kDa)

7.15

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 64 - 214 2.5e-30 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 471
AccBSI CCGCTC 1 cut(s) 862
AccII CGCG 1 cut(s) 763
AciI CCGC 3 cut(s) 95, 529, 862
AcoI YGGCCR 2 cut(s) 96, 462
AcsI RAATTY 4 cut(s) 8, 46, 334, 1217
AcuI CTGAAG 2 cut(s) 683, 837
AdeI CACNNNGTG 1 cut(s) 471
AfaI GTAC 4 cut(s) 936, 1029, 1330, 1387
AfeI AGCGCT 1 cut(s) 1405
AfiI CCNNNNNNNGG 2 cut(s) 471, 1397
AflIII ACRYGT 1 cut(s) 658
AjnI CCWGG 2 cut(s) 289, 1184
AluBI AGCT 4 cut(s) 106, 577, 707, 1241
AluI AGCT 4 cut(s) 106, 577, 707, 1241
Alw26I GTCTC 2 cut(s) 421, 859
Ama87I CYCGRG 2 cut(s) 344, 797
Aor51HI AGCGCT 1 cut(s) 1405
AoxI GGCC 4 cut(s) 96, 155, 462, 633
ApaI GGGCCC 1 cut(s) 637
ApeKI GCWGC 2 cut(s) 707, 839
ApoI RAATTY 4 cut(s) 8, 46, 334, 1217
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 2 cut(s) 844, 1406
AspS9I GGNCC 4 cut(s) 155, 633, 634, 1255
AsuC2I CCSGG 1 cut(s) 1253
AsuHPI GGTGA 3 cut(s) 411, 980, 1187
AvaI CYCGRG 2 cut(s) 344, 797
AvaII GGWCC 1 cut(s) 1255
BaeGI GKGCMC 1 cut(s) 637
BaeI ACNNNNGTAYC 2 cut(s) 1320, 1353
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 694, 826
BccI CCATC 2 cut(s) 689, 1391
BceAI ACGGC 1 cut(s) 1319
BciT130I CCWGG 2 cut(s) 291, 1186
BciVI GTATCC 1 cut(s) 1304
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 1253
BcoDI GTCTC 2 cut(s) 421, 859
BfoI RGCGCY 1 cut(s) 1407
BfuI GTATCC 1 cut(s) 1304
BglII AGATCT 2 cut(s) 255, 755
BisI GCNGC 4 cut(s) 96, 530, 708, 840
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 4 cut(s) 97, 531, 709, 841
Bme1390I CCNGG 3 cut(s) 291, 1186, 1253
Bme18I GGWCC 1 cut(s) 1255
BmeT110I CYCGRG 2 cut(s) 344, 797
BmgT120I GGNCC 4 cut(s) 155, 633, 634, 1255
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 3 cut(s) 291, 1186, 1253
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 126, 128
BpuMI CCSGG 1 cut(s) 1253
BsaJI CCNNGG 4 cut(s) 57, 963, 1089, 1184
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 1397
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 2 cut(s) 318, 459
BseBI CCWGG 2 cut(s) 291, 1186
BseDI CCNNGG 4 cut(s) 57, 963, 1089, 1184
BseGI GGATG 3 cut(s) 260, 313, 1369
BseLI CCNNNNNNNGG 2 cut(s) 471, 1397
BseMI GCAATG 2 cut(s) 318, 459
BseMII CTCAG 3 cut(s) 459, 617, 996
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 2 cut(s) 694, 826
BsgI GTGCAG 1 cut(s) 1397
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 4 cut(s) 98, 157, 464, 635
BsiHKCI CYCGRG 2 cut(s) 344, 797
BsiSI CCGG 1 cut(s) 1253
BslI CCNNNNNNNGG 2 cut(s) 471, 1397
BsmAI GTCTC 2 cut(s) 421, 859
BsmBI CGTCTC 1 cut(s) 859
BsnI GGCC 4 cut(s) 98, 157, 464, 635
BsoBI CYCGRG 2 cut(s) 344, 797
Bsp120I GGGCCC 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 3 cut(s) 255, 755, 1192
Bsp1720I GCTNAGC 1 cut(s) 603
BspACI CCGC 3 cut(s) 95, 529, 862
BspANI GGCC 4 cut(s) 98, 157, 464, 635
BspCNI CTCAG 3 cut(s) 460, 616, 997
BspFNI CGCG 1 cut(s) 763
BspLI GGNNCC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 318, 459
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 4 cut(s) 57, 963, 1089, 1184
BssMI GATC 3 cut(s) 255, 755, 1192
BssT1I CCWWGG 2 cut(s) 963, 1089
Bst2UI CCWGG 2 cut(s) 291, 1186
Bst4CI ACNGT 5 cut(s) 194, 584, 1316, 1323, 1421
Bst6I CTCTTC 2 cut(s) 224, 691
BstAPI GCANNNNNTGC 1 cut(s) 916
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 5 cut(s) 117, 468, 480, 603, 1005
BstF5I GGATG 3 cut(s) 260, 313, 1369
BstFNI CGCG 1 cut(s) 763
BstH2I RGCGCY 1 cut(s) 1407
BstHHI GCGC 2 cut(s) 844, 1406
BstKTI GATC 3 cut(s) 258, 758, 1195
BstMAI GTCTC 2 cut(s) 421, 859
BstMBI GATC 3 cut(s) 255, 755, 1192
BstMWI GCNNNNNNNGC 3 cut(s) 662, 916, 1412
BstNI CCWGG 2 cut(s) 291, 1186
BstNSI RCATGY 2 cut(s) 387, 662
BstSCI CCNGG 3 cut(s) 289, 1184, 1251
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 694, 826
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 2 cut(s) 255, 755
BstYI RGATCY 2 cut(s) 255, 755
BsuI GTATCC 1 cut(s) 1304
BsuRI GGCC 4 cut(s) 98, 157, 464, 635
BtsCI GGATG 3 cut(s) 260, 313, 1369
BtsI GCAGTG 1 cut(s) 1211
BtsIMutI CAGTG 2 cut(s) 465, 1211
Cac8I GCNNGC 1 cut(s) 705
CfoI GCGC 2 cut(s) 844, 1406
Cfr13I GGNCC 4 cut(s) 155, 633, 634, 1255
CseI GACGC 2 cut(s) 731, 864
Csp6I GTAC 4 cut(s) 935, 1028, 1329, 1386
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 7 cut(s) 214, 384, 608, 630, 659, 1298, 1355
CviQI GTAC 4 cut(s) 935, 1028, 1329, 1386
DdeI CTNAG 5 cut(s) 117, 468, 480, 603, 1005
DpnI GATC 3 cut(s) 257, 757, 1194
DpnII GATC 3 cut(s) 255, 755, 1192
DraI TTTAAA 1 cut(s) 13
DraIII CACNNNGTG 1 cut(s) 471
EaeI YGGCCR 2 cut(s) 96, 462
Eam1104I CTCTTC 2 cut(s) 224, 691
EarI CTCTTC 2 cut(s) 224, 691
Eco130I CCWWGG 2 cut(s) 963, 1089
Eco24I GRGCYC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 1255
Eco47III AGCGCT 1 cut(s) 1405
Eco57I CTGAAG 2 cut(s) 683, 837
Eco88I CYCGRG 2 cut(s) 344, 797
EcoO109I RGGNCCY 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 289, 1184
EcoT14I CCWWGG 2 cut(s) 963, 1089
EcoT22I ATGCAT 2 cut(s) 389, 1417
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 963, 1089
Esp3I CGTCTC 1 cut(s) 859
FaeI CATG 7 cut(s) 217, 387, 611, 633, 662, 1301, 1358
FatI CATG 7 cut(s) 213, 383, 607, 629, 658, 1297, 1354
FauNDI CATATG 1 cut(s) 225
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 4 cut(s) 96, 530, 708, 840
FokI GGATG 3 cut(s) 247, 320, 1356
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 4 cut(s) 96, 530, 708, 840
GlaI GCGC 2 cut(s) 843, 1405
GluI GCNGC 4 cut(s) 96, 530, 708, 840
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 1407
HaeIII GGCC 4 cut(s) 98, 157, 464, 635
HapII CCGG 1 cut(s) 1253
HgaI GACGC 2 cut(s) 731, 864
HhaI GCGC 2 cut(s) 844, 1406
Hin1II CATG 7 cut(s) 217, 387, 611, 633, 662, 1301, 1358
Hin6I GCGC 2 cut(s) 842, 1404
HinP1I GCGC 2 cut(s) 842, 1404
HincII GTYRAC 3 cut(s) 83, 114, 1339
HindII GTYRAC 3 cut(s) 83, 114, 1339
HinfI GANTC 7 cut(s) 169, 239, 340, 414, 800, 827, 1273
HpaII CCGG 1 cut(s) 1253
HphI GGTGA 3 cut(s) 411, 980, 1187
Hpy166II GTNNAC 7 cut(s) 83, 114, 812, 971, 1319, 1339, 1424
Hpy188I TCNGA 7 cut(s) 61, 286, 443, 805, 1006, 1272, 1435
Hpy188III TCNNGA 5 cut(s) 173, 344, 346, 434, 590
Hpy8I GTNNAC 7 cut(s) 83, 114, 812, 971, 1319, 1339, 1424
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 372, 469, 565, 889
HpyCH4III ACNGT 5 cut(s) 194, 584, 1316, 1323, 1421
HpyCH4IV ACGT 2 cut(s) 868, 1162
HpyCH4V TGCA 7 cut(s) 205, 311, 316, 387, 1144, 1378, 1415
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 916, 1412
HpyF3I CTNAG 5 cut(s) 117, 468, 480, 603, 1005
HpySE526I ACGT 2 cut(s) 868, 1162
Hsp92II CATG 7 cut(s) 217, 387, 611, 633, 662, 1301, 1358
HspAI GCGC 2 cut(s) 842, 1404
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 3 cut(s) 255, 755, 1192
LmnI GCTCC 2 cut(s) 574, 859
Lsp1109I GCAGC 2 cut(s) 694, 826
LweI GCATC 1 cut(s) 298
MaeII ACGT 2 cut(s) 868, 1162
MaeIII GTNAC 1 cut(s) 535
MalI GATC 3 cut(s) 257, 757, 1194
MbiI CCGCTC 1 cut(s) 862
MboI GATC 3 cut(s) 255, 755, 1192
MfeI CAATTG 1 cut(s) 1139
MflI RGATCY 2 cut(s) 255, 755
MhlI GDGCHC 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 464
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 163, 334, 423, 809
MmeI TCCRAC 3 cut(s) 295, 378, 489
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 2 cut(s) 389, 1417
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 464
MseI TTAA 6 cut(s) 12, 72, 407, 855, 1095, 1134
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 1 cut(s) 1253
MspR9I CCNGG 3 cut(s) 291, 1186, 1253
MunI CAATTG 1 cut(s) 1139
MvaI CCWGG 2 cut(s) 291, 1186
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 3 cut(s) 662, 916, 1412
NciI CCSGG 1 cut(s) 1253
NdeI CATATG 1 cut(s) 225
NdeII GATC 3 cut(s) 255, 755, 1192
NlaIII CATG 7 cut(s) 217, 387, 611, 633, 662, 1301, 1358
NlaIV GGNNCC 1 cut(s) 635
NsiI ATGCAT 2 cut(s) 389, 1417
NspI RCATGY 2 cut(s) 387, 662
PaeR7I CTCGAG 2 cut(s) 344, 797
PciI ACATGT 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 239, 827, 1273
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 4 cut(s) 97, 531, 709, 841
PleI GAGTC 4 cut(s) 163, 334, 422, 808
PpsI GAGTC 4 cut(s) 163, 334, 422, 808
PscI ACATGT 1 cut(s) 658
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 289, 1184
PspGI CCWGG 2 cut(s) 289, 1184
PspN4I GGNNCC 1 cut(s) 635
PspOMI GGGCCC 1 cut(s) 633
PspPI GGNCC 4 cut(s) 155, 633, 634, 1255
PspXI VCTCGAGB 1 cut(s) 797
PsuI RGATCY 2 cut(s) 255, 755
RsaI GTAC 4 cut(s) 936, 1029, 1330, 1387
RsaNI GTAC 4 cut(s) 935, 1028, 1329, 1386
SaqAI TTAA 6 cut(s) 12, 72, 407, 855, 1095, 1134
SatI GCNGC 4 cut(s) 96, 530, 708, 840
Sau3AI GATC 3 cut(s) 255, 755, 1192
Sau96I GGNCC 4 cut(s) 155, 633, 634, 1255
SchI GAGTC 4 cut(s) 163, 334, 423, 809
ScrFI CCNGG 3 cut(s) 291, 1186, 1253
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 298
Sfr274I CTCGAG 2 cut(s) 344, 797
SinI GGWCC 1 cut(s) 1255
SlaI CTCGAG 2 cut(s) 344, 797
SmlI CTYRAG 4 cut(s) 107, 141, 344, 797
SmoI CTYRAG 4 cut(s) 107, 141, 344, 797
SsiI CCGC 3 cut(s) 95, 529, 862
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 3 cut(s) 289, 1184, 1251
StyI CCWWGG 2 cut(s) 963, 1089
TaaI ACNGT 5 cut(s) 194, 584, 1316, 1323, 1421
TaiI ACGT 2 cut(s) 871, 1165
TaqI TCGA 2 cut(s) 345, 798
TatI WGTACW 2 cut(s) 934, 1027
TauI GCSGC 2 cut(s) 98, 532
TfiI GAWTC 3 cut(s) 239, 827, 1273
Tru1I TTAA 6 cut(s) 12, 72, 407, 855, 1095, 1134
Tru9I TTAA 6 cut(s) 12, 72, 407, 855, 1095, 1134
TscAI CASTG 2 cut(s) 472, 1211
TseI GCWGC 2 cut(s) 707, 839
TspRI CASTG 2 cut(s) 472, 1211
Van91I CCANNNNNTGG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 1255
XapI RAATTY 4 cut(s) 8, 46, 334, 1217
XceI RCATGY 2 cut(s) 387, 662
XhoI CTCGAG 2 cut(s) 344, 797
XmnI GAANNNNTTC 1 cut(s) 238
Zsp2I ATGCAT 2 cut(s) 389, 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.