Rmu_sc0005888.1_g000015

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0000126
Physical Location & Seq
Reverse (-)
64604 .. 66347
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005888.1_g000015.1.cds

Sequence Viewer

Length: 903 bp
atgaggttgagtgtaaggactaaggagaaggaactgaacaagtaccgtgaggatgctaagttgaaagtggagcaactaagtgtgattgatggggcaattgtggagcgtaacgaaatcatcgagtcaaaagatgagaaattgagttggattgagaagagtattgaagagaaatccaagttggccaactctaaggaggaggaagtgagagcgatacaacggtcgttgaatgtataccgtgagagtattaagtcaaaagagagtgacttagatgcgattcttgagtcgattgaagggaagaagaaagaatttgatgtgaaagaagagcaaattaaaacgttgcagagattgattgagggatgtgagaaagagctcaaattgaaagaggagatattgaaggaggaaacactgaaagtgaaagaatacagtttgcgaaatagacaaatggaggagtggtcctgcaggcttgaacttaaagagagggaagttgaattgaaagagaaacgattagagtcaaaaatggaggaatttaaaaaatgggttgaagaacgaggaaaggatttgaattcactctcctcagaacttaaagttaaagatcgtgcattcagattggagtatggagatttggttgaaataattggttactgggtgaccatggagaagatagcatccgatttgaaagtatcagagttgaagcagaggagtctaggcaaggcgtacgagaccttgcattcccaagcgtcttccatactcgttctcagcattcaatggaaggacctccaggaacacttcgattcgactcggaatgcgatccggactcgtttcgaagagcttcaggaacgagagaagcagttggaagccaaggagtcaaacttgaagtcggagatggaatccaagaaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

300

Amino Acids

35.65

Weight (kDa)

5.65

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 810
AclI AACGTT 1 cut(s) 335
AclWI GGATC 1 cut(s) 802
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 3 cut(s) 305, 524, 562
AcuI CTGAAG 1 cut(s) 815
AfaI GTAC 2 cut(s) 44, 716
AjnI CCWGG 1 cut(s) 777
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 370, 829
AluI AGCT 2 cut(s) 370, 829
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 1 cut(s) 802
Aor13HI TCCGGA 1 cut(s) 810
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 3 cut(s) 305, 524, 562
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
Asp700I GAANNNNTTC 1 cut(s) 828
AspS9I GGNCC 2 cut(s) 453, 772
AsuHPI GGTGA 1 cut(s) 658
AsuII TTCGAA 1 cut(s) 822
AvaII GGWCC 2 cut(s) 453, 772
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 372
BccI CCATC 2 cut(s) 83, 877
BciT130I CCWGG 1 cut(s) 779
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 2 cut(s) 704, 901
BfmI CTRYAG 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 2 cut(s) 453, 772
BmgT120I GGNCC 2 cut(s) 453, 772
BmrFI CCNGG 1 cut(s) 779
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 3 cut(s) 43, 259, 674
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 651, 858
BsaWI WCCGGW 1 cut(s) 810
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 609, 639
Bse1I ACTGG 1 cut(s) 647
BseAI TCCGGA 1 cut(s) 810
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 651, 858
BseGI GGATG 3 cut(s) 58, 362, 665
BseMII CTCAG 2 cut(s) 588, 769
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 5 cut(s) 209, 398, 461, 562, 712
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 811
BsiWI CGTACG 1 cut(s) 714
BsmAI GTCTC 1 cut(s) 713
BsmI GAATGC 4 cut(s) 599, 727, 759, 808
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 713
Bsp119I TTCGAA 1 cut(s) 822
Bsp1286I GDGCHC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 810
Bsp143I GATC 2 cut(s) 592, 807
Bsp19I CCATGG 1 cut(s) 651
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 587, 768
BspEI TCCGGA 1 cut(s) 810
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 802
BspQI GCTCTTC 2 cut(s) 315, 819
BspT104I TTCGAA 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 713
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 2 cut(s) 651, 858
BssMI GATC 2 cut(s) 592, 807
BssNAI GTATAC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 651, 858
Bst1107I GTATAC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 4 cut(s) 47, 219, 236, 425
Bst6I CTCTTC 4 cut(s) 149, 159, 315, 819
BstBI TTCGAA 1 cut(s) 822
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 7 cut(s) 21, 57, 77, 189, 265, 574, 755
BstDSI CCRYGG 1 cut(s) 651
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 3 cut(s) 58, 362, 665
BstKTI GATC 2 cut(s) 595, 810
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 2 cut(s) 592, 807
BstMCI CGRYCG 1 cut(s) 221
BstNI CCWGG 1 cut(s) 779
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 732
BstZ17I GTATAC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 3 cut(s) 58, 362, 665
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 453, 772
CseI GACGC 1 cut(s) 726
Csp6I GTAC 2 cut(s) 43, 715
CviAII CATG 1 cut(s) 652
CviJI RGCY 5 cut(s) 182, 370, 463, 829, 857
CviKI_1 RGCY 5 cut(s) 182, 370, 463, 829, 857
CviQI GTAC 2 cut(s) 43, 715
DdeI CTNAG 7 cut(s) 21, 57, 77, 189, 265, 574, 755
DpnI GATC 2 cut(s) 594, 809
DpnII GATC 2 cut(s) 592, 807
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 4 cut(s) 149, 159, 315, 819
EarI CTCTTC 4 cut(s) 149, 159, 315, 819
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 651, 858
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 453, 772
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 815
Eco91I GGTNACC 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 772
EcoO65I GGTNACC 1 cut(s) 646
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 651, 858
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 651, 858
FaeI CATG 1 cut(s) 655
FaiI YATR 4 cut(s) 232, 615, 653, 746
FatI CATG 1 cut(s) 651
FblI GTMKAC 1 cut(s) 231
FokI GGATG 3 cut(s) 65, 369, 652
FriOI GRGCYC 1 cut(s) 372
FspBI CTAG 2 cut(s) 704, 901
GsuI CTGGAG 1 cut(s) 761
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 811
HgaI GACGC 1 cut(s) 726
Hin1II CATG 1 cut(s) 655
HpaII CCGG 1 cut(s) 811
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 6 cut(s) 577, 605, 670, 685, 801, 880
Hpy188III TCNNGA 3 cut(s) 278, 811, 833
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 5 cut(s) 22, 284, 388, 763, 889
HpyCH4III ACNGT 4 cut(s) 47, 219, 236, 425
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 4 cut(s) 340, 459, 599, 727
HpyF3I CTNAG 7 cut(s) 21, 57, 77, 189, 265, 574, 755
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 1 cut(s) 655
Kpn2I TCCGGA 1 cut(s) 810
Kzo9I GATC 2 cut(s) 592, 807
LguI GCTCTTC 2 cut(s) 315, 819
LmnI GCTCC 2 cut(s) 70, 103
LpnPI CCDG 7 cut(s) 445, 469, 628, 764, 791, 818, 824
LweI GCATC 3 cut(s) 43, 259, 674
MaeI CTAG 2 cut(s) 704, 901
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 4 cut(s) 107, 260, 638, 646
MalI GATC 2 cut(s) 594, 809
MboI GATC 2 cut(s) 592, 807
MboII GAAGA 9 cut(s) 166, 176, 307, 310, 332, 554, 670, 732, 836
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 372
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 9 cut(s) 96, 137, 305, 327, 374, 488, 524, 562, 633
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 7 cut(s) 131, 290, 518, 709, 790, 808, 872
MmeI TCCRAC 3 cut(s) 125, 831, 858
Mox20I TGGCCA 1 cut(s) 182
MroI TCCGGA 1 cut(s) 810
MroXI GAANNNNTTC 1 cut(s) 828
MscI TGGCCA 1 cut(s) 182
MseI TTAA 6 cut(s) 246, 330, 471, 528, 582, 588
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 1 cut(s) 811
MspR9I CCNGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 4 cut(s) 599, 727, 759, 808
MvaI CCWGG 1 cut(s) 779
NcoI CCATGG 1 cut(s) 651
NdeII GATC 2 cut(s) 592, 807
NlaIII CATG 1 cut(s) 655
NmuCI GTSAC 2 cut(s) 260, 646
NspV TTCGAA 1 cut(s) 822
PciSI GCTCTTC 2 cut(s) 315, 819
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 4 cut(s) 599, 727, 759, 808
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 3 cut(s) 274, 791, 887
Pfl23II CGTACG 1 cut(s) 714
PfoI TCCNGGA 1 cut(s) 777
PleI GAGTC 7 cut(s) 130, 289, 517, 708, 790, 808, 871
PpsI GAGTC 7 cut(s) 130, 289, 517, 708, 790, 808, 871
PpuMI RGGWCCY 1 cut(s) 772
Psp124BI GAGCTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 777
PspEI GGTNACC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 777
PspLI CGTACG 1 cut(s) 714
PspPI GGNCC 2 cut(s) 453, 772
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 1 cut(s) 461
RsaI GTAC 2 cut(s) 44, 716
RsaNI GTAC 2 cut(s) 43, 715
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 2 cut(s) 315, 819
SaqAI TTAA 6 cut(s) 246, 330, 471, 528, 582, 588
Sau3AI GATC 2 cut(s) 592, 807
Sau96I GGNCC 2 cut(s) 453, 772
SbfI CCTGCAGG 1 cut(s) 461
SchI GAGTC 7 cut(s) 131, 290, 518, 709, 790, 808, 872
ScrFI CCNGG 1 cut(s) 779
SdaI CCTGCAGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 8, 338, 372, 725, 777, 831
SfaNI GCATC 3 cut(s) 43, 259, 674
SfcI CTRYAG 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 822
SinI GGWCC 2 cut(s) 453, 772
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse8387I CCTGCAGG 1 cut(s) 461
Sse9I AATT 9 cut(s) 96, 137, 305, 327, 374, 488, 524, 562, 633
SspMI CTAG 2 cut(s) 704, 901
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 2 cut(s) 651, 858
TaaI ACNGT 4 cut(s) 47, 219, 236, 425
TaiI ACGT 1 cut(s) 338
TaqI TCGA 5 cut(s) 120, 284, 789, 794, 822
TasI AATT 9 cut(s) 96, 137, 305, 327, 374, 488, 524, 562, 633
TfiI GAWTC 3 cut(s) 274, 791, 887
Tru1I TTAA 6 cut(s) 246, 330, 471, 528, 582, 588
Tru9I TTAA 6 cut(s) 246, 330, 471, 528, 582, 588
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 260, 646
Tsp45I GTSAC 2 cut(s) 260, 646
TspRI CASTG 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 453, 772
XapI RAATTY 3 cut(s) 305, 524, 562
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 2 cut(s) 704, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.