Rw2G005470

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000126
Physical Location & Seq
Forward (+)
5161491 .. 5163264
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005470.1

Sequence Viewer

Length: 687 bp
ATGGAGGAGGAGATAGCATCGGAGTTGGGAGAATCGGAGTTGAAGCAGAGAAATGTGAGAGAAGCGTGGAAGGAGCTGGACGACCACTTTGACTCGACCCGGAGAGGGCTCTGGACCAGGTTCCAGGAGCTCCAGGCCCGCGAGGAGGGAATCGGAGTCCGTGAGAAGCTGTTGGAGGTGAAAGAGCTGAGATTCGAAGCTCAAGCCAAGGGATTGAATGAAGTTGAGAAGCGGGCCAAAGAAGGTAAGAGTCAGTTGGAGTCTCTTAGGGTTTTGATTGAAAAACATGAAGAAGAGCTTGGTGTTAAAGAAAAGAAGCTTTCGGAGGTTGGGGAAAAGGAGAGGGACTATGATTTGATTCAGAACCGTGTGAAAGAGAGGGTTAAGAGACTGAAGAAGTATAACCGTGCGATTGAGTTGAAAAAGGGGCAACTTGGTTCGATTCTGAAATCGATGATGGATTTGAGTTATGGTTTTCGATGTATGATGAGAAAGATCTTCAAAGCCTTCTTGCTGTTGTTCATAAGCCCGAACAAGCATCTCAATCAAGTAGGGCCCTTGGTATCAAAGATAAAGCACCTGAACTTTAATAATCTTTTGTTACGAAAAAGATTTGTACAAGGAGATCATGCATATGTGACTTTACAATGTACCCATAGACATCGATCGCGAGCTCGAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

228

Amino Acids

26.93

Weight (kDa)

9.71

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 141, 670
AciI CCGC 2 cut(s) 139, 232
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 2 cut(s) 618, 652
AfiI CCNNNNNNNGG 2 cut(s) 105, 145
AgsI TTSAA 5 cut(s) 43, 217, 281, 421, 502
AjnI CCWGG 3 cut(s) 116, 123, 132
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
Alw21I GWGCWC 2 cut(s) 132, 676
Alw26I GTCTC 2 cut(s) 267, 382
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 3 cut(s) 135, 234, 554
ApaI GGGCCC 1 cut(s) 558
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 5 cut(s) 114, 136, 234, 554, 555
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 195
AsuNHI GCTAGC 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 4 cut(s) 111, 132, 558, 676
Bbv12I GWGCWC 2 cut(s) 132, 676
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 3 cut(s) 118, 125, 134
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 267, 382
BfaI CTAG 2 cut(s) 681, 685
BglII AGATCT 1 cut(s) 495
Bme1390I CCNGG 4 cut(s) 100, 118, 125, 134
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 5 cut(s) 114, 136, 234, 554, 555
BmiI GGNNCC 2 cut(s) 122, 556
BmrFI CCNGG 4 cut(s) 100, 118, 125, 134
BmsI GCATC 2 cut(s) 26, 547
BmtI GCTAGC 1 cut(s) 684
BpmI CTGGAG 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 100
Bsa29I ATCGAT 2 cut(s) 452, 664
BsaJI CCNNGG 2 cut(s) 207, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 145
BseBI CCWGG 3 cut(s) 118, 125, 134
BseCI ATCGAT 2 cut(s) 452, 664
BseDI CCNNGG 2 cut(s) 207, 558
BseLI CCNNNNNNNGG 2 cut(s) 105, 145
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 20, 23, 158
BseSI GKGCMC 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 141, 670
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 3 cut(s) 137, 236, 556
BshVI ATCGAT 2 cut(s) 452, 664
BsiEI CGRYCG 1 cut(s) 668
BsiHKAI GWGCWC 2 cut(s) 132, 676
BsiHKCI CYCGRG 1 cut(s) 675
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 105, 145
BsmAI GTCTC 2 cut(s) 267, 382
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 3 cut(s) 137, 236, 556
BsoBI CYCGRG 1 cut(s) 675
Bsp119I TTCGAA 1 cut(s) 195
Bsp120I GGGCCC 1 cut(s) 554
Bsp1286I GDGCHC 4 cut(s) 111, 132, 558, 676
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 3 cut(s) 495, 625, 665
Bsp68I TCGCGA 1 cut(s) 670
BspACI CCGC 2 cut(s) 139, 232
BspANI GGCC 3 cut(s) 137, 236, 556
BspCNI CTCAG 1 cut(s) 180
BspDI ATCGAT 2 cut(s) 452, 664
BspFNI CGCG 2 cut(s) 141, 670
BspLI GGNNCC 2 cut(s) 122, 556
BspOI GCTAGC 1 cut(s) 684
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 207, 558
BssMI GATC 3 cut(s) 495, 625, 665
BssT1I CCWWGG 2 cut(s) 207, 558
Bst2UI CCWGG 3 cut(s) 118, 125, 134
Bst4CI ACNGT 2 cut(s) 368, 407
Bst6I CTCTTC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 616
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 139, 234, 672, 682
BstDEI CTNAG 2 cut(s) 188, 266
BstFNI CGCG 2 cut(s) 141, 670
BstKTI GATC 3 cut(s) 498, 628, 668
BstMAI GTCTC 2 cut(s) 267, 382
BstMBI GATC 3 cut(s) 495, 625, 665
BstMCI CGRYCG 1 cut(s) 668
BstNI CCWGG 3 cut(s) 118, 125, 134
BstSCI CCNGG 4 cut(s) 98, 116, 123, 132
BstSLI GKGCMC 1 cut(s) 558
BstUI CGCG 2 cut(s) 141, 670
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
Bsu15I ATCGAT 2 cut(s) 452, 664
BsuRI GGCC 3 cut(s) 137, 236, 556
BsuTUI ATCGAT 2 cut(s) 452, 664
BtuMI TCGCGA 1 cut(s) 670
Cac8I GCNNGC 4 cut(s) 139, 234, 672, 682
Cfr13I GGNCC 5 cut(s) 114, 136, 234, 554, 555
ClaI ATCGAT 2 cut(s) 452, 664
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 2 cut(s) 617, 651
CviAII CATG 2 cut(s) 287, 629
CviQI GTAC 2 cut(s) 617, 651
DdeI CTNAG 2 cut(s) 188, 266
DpnI GATC 3 cut(s) 497, 627, 667
DpnII GATC 3 cut(s) 495, 625, 665
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 2 cut(s) 130, 674
Eco130I CCWWGG 2 cut(s) 207, 558
Eco24I GRGCYC 4 cut(s) 111, 132, 558, 676
Eco47I GGWCC 1 cut(s) 114
Eco53kI GAGCTC 2 cut(s) 130, 674
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 675
EcoICRI GAGCTC 2 cut(s) 130, 674
EcoO109I RGGNCCY 2 cut(s) 554, 555
EcoRII CCWGG 3 cut(s) 116, 123, 132
EcoT14I CCWWGG 2 cut(s) 207, 558
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 4 cut(s) 111, 132, 558, 676
ErhI CCWWGG 2 cut(s) 207, 558
FaeI CATG 2 cut(s) 290, 632
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 286, 628
FauI CCCGC 2 cut(s) 146, 225
FauNDI CATATG 1 cut(s) 634
FriOI GRGCYC 4 cut(s) 111, 132, 558, 676
FspBI CTAG 2 cut(s) 681, 685
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 3 cut(s) 137, 236, 556
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 290, 632
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 9 cut(s) 32, 92, 150, 156, 192, 250, 260, 358, 442
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 6 cut(s) 22, 37, 155, 325, 363, 447
Hpy188III TCNNGA 2 cut(s) 112, 669
HpyAV CCTTC 3 cut(s) 64, 236, 517
HpyCH4III ACNGT 2 cut(s) 368, 407
HpyCH4V TGCA 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 188, 266
Hsp92II CATG 2 cut(s) 290, 632
Kzo9I GATC 3 cut(s) 495, 625, 665
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 3 cut(s) 73, 127, 135
LweI GCATC 2 cut(s) 26, 547
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 2 cut(s) 681, 685
MaeIII GTNAC 2 cut(s) 600, 637
MalI GATC 3 cut(s) 497, 627, 667
MboI GATC 3 cut(s) 495, 625, 665
MboII GAAGA 4 cut(s) 302, 305, 406, 490
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 4 cut(s) 111, 132, 558, 676
MlyI GAGTC 4 cut(s) 86, 165, 259, 269
MmeI TCCRAC 2 cut(s) 153, 237
MnlI CCTC 7 cut(s) 98, 136, 139, 169, 319, 336, 372
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 306, 384, 588
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 4 cut(s) 100, 118, 125, 134
MvaI CCWGG 3 cut(s) 118, 125, 134
MvnI CGCG 2 cut(s) 141, 670
NciI CCSGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 634
NdeII GATC 3 cut(s) 495, 625, 665
NheI GCTAGC 1 cut(s) 680
NlaIII CATG 2 cut(s) 290, 632
NlaIV GGNNCC 2 cut(s) 122, 556
NmuCI GTSAC 1 cut(s) 637
NruI TCGCGA 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 634
NspV TTCGAA 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 5 cut(s) 32, 150, 192, 358, 442
PfoI TCCNGGA 1 cut(s) 123
Ple19I CGATCG 1 cut(s) 668
PleI GAGTC 4 cut(s) 86, 164, 258, 268
PpsI GAGTC 4 cut(s) 86, 164, 258, 268
Psp124BI GAGCTC 2 cut(s) 132, 676
Psp6I CCWGG 3 cut(s) 116, 123, 132
PspGI CCWGG 3 cut(s) 116, 123, 132
PspN4I GGNNCC 2 cut(s) 122, 556
PspOMI GGGCCC 1 cut(s) 554
PspPI GGNCC 5 cut(s) 114, 136, 234, 554, 555
PspXI VCTCGAGB 1 cut(s) 675
PsuI RGATCY 1 cut(s) 495
PvuI CGATCG 1 cut(s) 668
RruI TCGCGA 1 cut(s) 670
RsaI GTAC 2 cut(s) 618, 652
RsaNI GTAC 2 cut(s) 617, 651
RseI CAYNNNNRTG 1 cut(s) 633
SacI GAGCTC 2 cut(s) 132, 676
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 306, 384, 588
Sau3AI GATC 3 cut(s) 495, 625, 665
Sau96I GGNCC 5 cut(s) 114, 136, 234, 554, 555
SchI GAGTC 4 cut(s) 86, 165, 259, 269
ScrFI CCNGG 4 cut(s) 100, 118, 125, 134
SduI GDGCHC 4 cut(s) 111, 132, 558, 676
SexAI ACCWGGT 1 cut(s) 116
SfaNI GCATC 2 cut(s) 26, 547
Sfr274I CTCGAG 1 cut(s) 675
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 201, 675
SmoI CTYRAG 2 cut(s) 201, 675
SsiI CCGC 2 cut(s) 139, 232
SspMI CTAG 2 cut(s) 681, 685
SstI GAGCTC 2 cut(s) 132, 676
StyD4I CCNGG 4 cut(s) 98, 116, 123, 132
StyI CCWWGG 2 cut(s) 207, 558
TaaI ACNGT 2 cut(s) 368, 407
TaqI TCGA 7 cut(s) 95, 195, 440, 452, 478, 664, 676
TatI WGTACW 1 cut(s) 616
TfiI GAWTC 5 cut(s) 32, 150, 192, 358, 442
Tru1I TTAA 3 cut(s) 306, 384, 588
Tru9I TTAA 3 cut(s) 306, 384, 588
TseFI GTSAC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 234, 303, 511
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 675
XspI CTAG 2 cut(s) 681, 685
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.