FvH4_6g04562

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000126
Physical Location & Seq
Reverse (-)
2519473 .. 2520078
606 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04562.t1

Sequence Viewer

Length: 606 bp
ATGGAGGAGGTATGCTTGAATTTGGAAGAATGGAAGTTGGAGGTGTGCAAGCTCAAAAAGGCCTTTAAGAATTGCCTTTCCAGTTGCAATAAGATTGAAGATTGCTTCAGCTCAACCCGGAAATCGTTAGAGACTAAAACCCAAGAGCTTAAGGCCCGGGAGGAGGCAATCGGGCTCCGAGAGAAGCAGTTGGCAGAGACAGAGTCCAACTTTCAGTCCCTGTGGGGAAATAGGGAGAAGGAGTTGGATGCAATTGAGGAGGTGGTTACACAGAAGCTAGTACAAGTTGATGAAGTTACGACTGAGTTGGATCGTGTTAGTTTACTGGTTGAAGAAAAGAGGCAGGAGCTTGATACTAAAGAGAAGCGGTTTTTGGAAGTTGACAAGTTGGTTAGAGAAAATGAAAAGGAATGTGATTTGATCCAAAACTGTATTGAAGAGCGGAAGAGGAATTTGAGGAGGCTTGAGAAGGTTAGTGGGGAAATGGATGTGAAAATGAAAAGTTTTGGGGAAATGGATGTGAAAATGAAAAGTTTTAGATTGCTTGAGAAATCCATGGAGGATTGGTGCCATAAGCTTGACTTGAAAAAGAAGGAACTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.89

Weight (kDa)

5.31

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 567
AccBSI CCGCTC 1 cut(s) 442
AciI CCGC 2 cut(s) 367, 442
AclWI GGATC 2 cut(s) 318, 415
AcsI RAATTY 2 cut(s) 19, 451
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 163
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 5 cut(s) 19, 98, 332, 437, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 6 cut(s) 52, 111, 148, 277, 349, 577
AluI AGCT 6 cut(s) 52, 111, 148, 277, 349, 577
Alw26I GTCTC 2 cut(s) 125, 191
AlwI GGATC 2 cut(s) 318, 415
AlwNI CAGNNNCTG 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 2 cut(s) 60, 153
ApoI RAATTY 2 cut(s) 19, 451
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 3 cut(s) 118, 157, 158
AvaI CYCGRG 1 cut(s) 156
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 177
BcnI CCSGG 3 cut(s) 118, 157, 158
BcoDI GTCTC 2 cut(s) 125, 191
BfaI CTAG 1 cut(s) 278
BfrI CTTAAG 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 118, 157, 158
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 176, 569
BmrFI CCNGG 3 cut(s) 118, 157, 158
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 485, 566
BpuMI CCSGG 3 cut(s) 118, 157, 158
BsaJI CCNNGG 2 cut(s) 156, 555
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 551, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 81, 330
BseDI CCNNGG 2 cut(s) 156, 555
BseGI GGATG 3 cut(s) 253, 493, 523
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 81, 330
BseRI GAGGAG 4 cut(s) 20, 176, 272, 472
BshFI GGCC 2 cut(s) 62, 155
BshNI GGYRCC 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 118, 157
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 125, 191
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 62, 155
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 310, 420
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 367, 442
BspANI GGCC 2 cut(s) 62, 155
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 176, 569
BspPI GGATC 2 cut(s) 318, 415
BspQI GCTCTTC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 567
BspTI CTTAAG 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 81, 330
BssECI CCNNGG 2 cut(s) 156, 555
BssMI GATC 2 cut(s) 310, 420
BssT1I CCWWGG 1 cut(s) 555
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 432, 440
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 3 cut(s) 253, 493, 523
BstKTI GATC 2 cut(s) 313, 423
BstMAI GTCTC 2 cut(s) 125, 191
BstMBI GATC 2 cut(s) 310, 420
BstSCI CCNGG 3 cut(s) 116, 155, 156
BsuRI GGCC 2 cut(s) 62, 155
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 3 cut(s) 253, 493, 523
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 154
Cfr9I CCCGGG 1 cut(s) 156
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 556
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 303
DpnI GATC 2 cut(s) 312, 422
DpnII GATC 2 cut(s) 310, 420
Eam1104I CTCTTC 2 cut(s) 432, 440
EarI CTCTTC 2 cut(s) 432, 440
Eco130I CCWWGG 1 cut(s) 555
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 1 cut(s) 559
FaiI YATR 3 cut(s) 13, 557, 573
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 202
FatI CATG 1 cut(s) 555
FokI GGATG 3 cut(s) 260, 500, 530
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 1 cut(s) 278
HaeIII GGCC 2 cut(s) 62, 155
HapII CCGG 2 cut(s) 118, 157
Hin1II CATG 1 cut(s) 559
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 1 cut(s) 203
HpaII CCGG 2 cut(s) 118, 157
Hpy166II GTNNAC 2 cut(s) 323, 382
Hpy188I TCNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 323, 382
HpyAV CCTTC 3 cut(s) 232, 463, 586
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 48, 87, 251
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 559
Kzo9I GATC 2 cut(s) 310, 420
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 180, 346
LpnPI CCDG 6 cut(s) 94, 131, 170, 233, 311, 329
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 265, 295
MalI GATC 2 cut(s) 312, 422
MbiI CCGCTC 1 cut(s) 442
MboI GATC 2 cut(s) 310, 420
MboII GAAGA 5 cut(s) 38, 110, 344, 449, 457
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 4 cut(s) 19, 70, 252, 451
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 4 cut(s) 18, 225, 231, 288
MseI TTAA 2 cut(s) 66, 150
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 118, 157
MspR9I CCNGG 3 cut(s) 118, 157, 158
MunI CAATTG 1 cut(s) 252
NciI CCSGG 3 cut(s) 118, 157, 158
NcoI CCATGG 1 cut(s) 555
NdeII GATC 2 cut(s) 310, 420
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 2 cut(s) 176, 569
PceI AGGCCT 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 432
PflFI GACNNNGTC 1 cut(s) 202
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 176, 569
PspPI GGNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 66, 150
Sau3AI GATC 2 cut(s) 310, 420
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 118, 157, 158
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 1 cut(s) 238
SmaI CCCGGG 1 cut(s) 158
SmlI CTYRAG 4 cut(s) 149, 464, 545, 599
SmoI CTYRAG 4 cut(s) 149, 464, 545, 599
Sse9I AATT 4 cut(s) 19, 70, 252, 451
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 2 cut(s) 367, 442
SspMI CTAG 1 cut(s) 278
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 116, 155, 156
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 431
TasI AATT 4 cut(s) 19, 70, 252, 451
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 2 cut(s) 66, 150
Tru9I TTAA 2 cut(s) 66, 150
TspDTI ATGAA 4 cut(s) 306, 417, 512, 542
TspMI CCCGGG 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 202
Vha464I CTTAAG 1 cut(s) 149
XapI RAATTY 2 cut(s) 19, 451
XmaI CCCGGG 1 cut(s) 156
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.