Rroxscaffold_3G00224200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000126
Physical Location & Seq
Forward (+)
7332461 .. 7335439
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224200.1

Sequence Viewer

Length: 1713 bp
ATGTCTTCCGTACCGTTAGGGTTTTCAGAGGCGATGGCCCAAGTCGCAGCGACGGAGGCTGACGTCGGCATTGCGTGTCAGACCATGCAATCCCAACTCTCTTACCTCCTTGATCAAGTGAGCTTGGGGTTGGGGATGAGCACGGACCATCACGCCCGAGCCCAAGAGCTCGGTTCGAGGGAGGAGAGGCTCAACCAACGCCTCCGCGAGGTTGAATCCAAAGAAAGGCAGTTGGATTTACTCTGCCGAAGACTCAAAAGGAGAGAGAAGAAAGTTGAAGAGCCCAAGTTGAAACAATTCGAGCCTCGAGTTAAGACGGAGGAGGAGCAGTCGGTGGATCAATCTATCATGAACAGGGACTGTCGCGAGTTGCTGGTGTTCATGAATGAGCAATTCAGAAGAATTGATTTGGCGGGAAACCGGATGTCGGCTGTTGTTCAAGCATCTCCAGACCCTGGAAAGTTGGTTCTGGAGGCAGTGCGAGGGTTTTGTCCTTTGAATCGGAATGTGGATGGAAGAGAGACTGAAATGAGTTTGAGGTGTATGAGAAAGAGTTGTGTTCTGTTGTTGCAGGAGTTGAAGAGAATGTCGCCGCAAATTAGTGCTCGGGTGAGAGAGGAGGCAAAGAAGTTAGCAGCTGAGTGGAAAGCGAAGATGAAGGAGGGCAGTGAGAATAGTTGGGAGGCCAAAGGGCTTTTGCGGCTCATTGCTGCTTATGGTTTGGATGGTATTTGTGATGCTGAGGAGCTTCAGAGTCTTGTTGCTATGGTGGAGCAGCCGGAACAATCTAGTGAACTAAGAAGGACTCTTGGTTTGACAGATGGGGCACCGGGACGTGTCACTGTAGCTATGCTTTGGCAATTAGAATTTCTGTATATCTTCAACTTGCACACAGTGGATATTATGTTTGACATATGGACCAATGCCAATTCTTCCATTGTTAAGATCGAGGGACGAGAATCCTCTCTTGCTAGAAATGCAGTGACTCTTTCTTCTCCGAATCATTCTTTGCCGAATGACATGTTGGTTTCTCTTAAGTCGTCATCGGATAAGGCAAAACTTGTGTTGAAATTGATAAAAAGATCTTTAACCCAATACTGGACAAATGGTGATGTTAGCTCCAAAGAAACGGTTGTATCGAGTAACATTTCTCTATTGAATTTTCTAATGGGAGCCTCAGCTCATGTTGGACCTCATCTGAAGGATGGTGCAACAAATCTAGCAGCCAAGTGGAAAGCAAATATGACAGCTGATACTGAAAACTCATTGGAGAATTTGGGATTTTCGCTGTTTATAGCTATATATGGATTGGTTTCTACTTTAAACGAAGACGAGATTGTAAAGCTTCTTGGAAAGATTTCACAGCATAAACGGTCCCTAGAATTATGTCAGACACATGGTTTTGCAGATAAGATTACTGGTCTTATTGGGAAACTTATTGAAAAGAAGCAAGATGCAAAGGAGTGGTCTGAATTAGTTTGCAGCTTAAAGATATCAGATGCTGAAAAGGAGAAGGCTGTAAATGGAAAAATAGCTGATCTTAGAGCTGTCATTCAATGCATCAAAGATTGCAACCTTGAGTCTGAATACCCGTCTATGACTGTTGAAATGCAAATAGATCAGCTGCAAATACTCGAGGAGAATTGGAGATCATCTTGTGTCTCCAAAGTTAGACAACAAGAGAGAAAAAGGAAGAGACCTAATATCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

570

Amino Acids

64.15

Weight (kDa)

8.14

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 117 - 279 2.5e-32 Frigida-like protein
Frigida PF07899 335 - 485 1e-24 Frigida-like protein
Frigida PF07899 488 - 544 4.4e-06 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 2 cut(s) 207, 366
AciI CCGC 4 cut(s) 205, 413, 593, 700
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 3 cut(s) 866, 1159, 1273
AcuI CTGAAG 2 cut(s) 734, 1220
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 895
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 5 cut(s) 208, 225, 427, 455, 1098
AflII CTTAAG 1 cut(s) 1034
AflIII ACRYGT 2 cut(s) 835, 1020
AjiI CACGTC 1 cut(s) 836
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
Alw21I GWGCWC 3 cut(s) 143, 171, 607
Alw26I GTCTC 3 cut(s) 515, 1666, 1690
AlwI GGATC 1 cut(s) 345
AlwNI CAGNNNCTG 3 cut(s) 360, 455, 1502
Ama87I CYCGRG 4 cut(s) 156, 306, 606, 1634
AoxI GGCC 2 cut(s) 36, 684
ApeKI GCWGC 7 cut(s) 47, 635, 710, 775, 1223, 1482, 1624
ApoI RAATTY 3 cut(s) 866, 1159, 1273
ArsI GACNNNNNNTTYG 4 cut(s) 796, 828, 1451, 1483
Asp700I GAANNNNTTC 2 cut(s) 296, 1357
AspS9I GGNCC 5 cut(s) 37, 145, 918, 1190, 1374
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 2 cut(s) 622, 1121
AvaI CYCGRG 4 cut(s) 156, 306, 606, 1634
AvaII GGWCC 4 cut(s) 145, 918, 1190, 1374
BaeGI GKGCMC 1 cut(s) 829
BaeI ACNNNNGTAYC 2 cut(s) 1119, 1152
BanI GGYRCC 1 cut(s) 826
BanII GRGCYC 3 cut(s) 163, 171, 285
BbsI GAAGAC 2 cut(s) 256, 1335
Bbv12I GWGCWC 3 cut(s) 143, 171, 607
BbvCI CCTCAGC 2 cut(s) 741, 1177
BbvI GCAGC 7 cut(s) 59, 647, 697, 787, 1235, 1494, 1611
BccI CCATC 6 cut(s) 28, 156, 506, 719, 815, 1199
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 3 cut(s) 515, 1666, 1690
BfaI CTAG 4 cut(s) 789, 972, 1220, 1379
BfmI CTRYAG 1 cut(s) 843
BfrI CTTAAG 1 cut(s) 1034
BglII AGATCT 1 cut(s) 1082
BisI GCNGC 9 cut(s) 48, 593, 636, 701, 711, 776, 1224, 1483, 1625
BlsI GCNGC 9 cut(s) 49, 594, 637, 702, 712, 777, 1225, 1484, 1626
Bme1390I CCNGG 2 cut(s) 456, 831
Bme18I GGWCC 4 cut(s) 145, 918, 1190, 1374
BmeT110I CYCGRG 4 cut(s) 156, 306, 606, 1634
BmgBI CACGTC 1 cut(s) 836
BmgT120I GGNCC 5 cut(s) 37, 145, 918, 1190, 1374
BmiI GGNNCC 3 cut(s) 828, 1174, 1376
BmrFI CCNGG 2 cut(s) 456, 831
BmsI GCATC 5 cut(s) 452, 727, 1444, 1489, 1569
BpiI GAAGAC 2 cut(s) 256, 1335
BpmI CTGGAG 2 cut(s) 432, 491
Bpu10I CCTNAGC 2 cut(s) 741, 1177
BpuEI CTTGAG 1 cut(s) 1598
BpuMI CCSGG 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 1690
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 225, 427, 455, 1098
Bse1I ACTGG 2 cut(s) 1103, 1423
Bse3DI GCAATG 2 cut(s) 69, 705
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 5 cut(s) 141, 429, 517, 730, 1210
BseLI CCNNNNNNNGG 5 cut(s) 208, 225, 427, 455, 1098
BseMI GCAATG 2 cut(s) 69, 705
BseMII CTCAG 3 cut(s) 630, 732, 1191
BseNI ACTGG 2 cut(s) 1103, 1423
BseRI GAGGAG 6 cut(s) 197, 335, 338, 632, 758, 1652
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 7 cut(s) 59, 647, 697, 787, 1235, 1494, 1611
Bsh1236I CGCG 2 cut(s) 207, 366
BshFI GGCC 2 cut(s) 38, 686
BshNI GGYRCC 1 cut(s) 826
BsiHKAI GWGCWC 3 cut(s) 143, 171, 607
BsiHKCI CYCGRG 4 cut(s) 156, 306, 606, 1634
BsiSI CCGG 3 cut(s) 421, 779, 830
BslFI GGGAC 4 cut(s) 371, 846, 966, 1360
BslI CCNNNNNNNGG 5 cut(s) 208, 225, 427, 455, 1098
BsmAI GTCTC 3 cut(s) 515, 1666, 1690
BsmFI GGGAC 4 cut(s) 371, 846, 966, 1360
BsnI GGCC 2 cut(s) 38, 686
Bso31I GGTCTC 1 cut(s) 1690
BsoBI CYCGRG 4 cut(s) 156, 306, 606, 1634
Bsp1286I GDGCHC 6 cut(s) 143, 163, 171, 285, 607, 829
Bsp143I GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
Bsp68I TCGCGA 1 cut(s) 366
BspACI CCGC 4 cut(s) 205, 413, 593, 700
BspANI GGCC 2 cut(s) 38, 686
BspCNI CTCAG 3 cut(s) 631, 733, 1190
BspFNI CGCG 2 cut(s) 207, 366
BspHI TCATGA 2 cut(s) 348, 381
BspLI GGNNCC 3 cut(s) 828, 1174, 1376
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 826
BspTI CTTAAG 1 cut(s) 1034
BspTNI GGTCTC 1 cut(s) 1690
BsrDI GCAATG 2 cut(s) 69, 705
BsrI ACTGG 2 cut(s) 1103, 1423
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 7 cut(s) 15, 362, 844, 895, 1132, 1374, 1603
Bst6I CTCTTC 4 cut(s) 273, 511, 575, 1688
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 1034
BstDEI CTNAG 5 cut(s) 639, 741, 797, 1177, 1541
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 5 cut(s) 141, 429, 517, 730, 1210
BstFNI CGCG 2 cut(s) 207, 366
BstKTI GATC 7 cut(s) 115, 340, 948, 1085, 1540, 1621, 1652
BstMAI GTCTC 3 cut(s) 515, 1666, 1690
BstMBI GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
BstMWI GCNNNNNNNGC 4 cut(s) 44, 56, 700, 977
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 2 cut(s) 454, 829
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 829
BstUI CGCG 2 cut(s) 207, 366
BstV1I GCAGC 7 cut(s) 59, 647, 697, 787, 1235, 1494, 1611
BstV2I GAAGAC 2 cut(s) 256, 1335
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
BsuRI GGCC 2 cut(s) 38, 686
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 836
BtsCI GGATG 5 cut(s) 141, 429, 517, 730, 1210
BtsI GCAGTG 3 cut(s) 483, 673, 987
BtsIMutI CAGTG 5 cut(s) 483, 673, 840, 900, 987
BtuMI TCGCGA 1 cut(s) 366
CaiI CAGNNNCTG 3 cut(s) 360, 455, 1502
CciI TCATGA 2 cut(s) 348, 381
Cfr13I GGNCC 5 cut(s) 37, 145, 918, 1190, 1374
Csp6I GTAC 1 cut(s) 11
CviAII CATG 6 cut(s) 85, 349, 382, 1021, 1184, 1397
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 5 cut(s) 639, 741, 797, 1177, 1541
DpnI GATC 7 cut(s) 114, 339, 947, 1084, 1539, 1620, 1651
DpnII GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
DraI TTTAAA 1 cut(s) 1323
DraIII CACNNNGTG 1 cut(s) 895
Eam1104I CTCTTC 4 cut(s) 273, 511, 575, 1688
EarI CTCTTC 4 cut(s) 273, 511, 575, 1688
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 3 cut(s) 163, 171, 285
Eco31I GGTCTC 1 cut(s) 1690
Eco32I GATATC 1 cut(s) 1494
Eco47I GGWCC 4 cut(s) 145, 918, 1190, 1374
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 734, 1220
Eco88I CYCGRG 4 cut(s) 156, 306, 606, 1634
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 1494
EcoT22I ATGCAT 1 cut(s) 1562
EcoT38I GRGCYC 3 cut(s) 163, 171, 285
FaeI CATG 6 cut(s) 88, 352, 385, 1024, 1187, 1400
FaqI GGGAC 4 cut(s) 371, 846, 966, 1360
FatI CATG 6 cut(s) 84, 348, 381, 1020, 1183, 1396
FauI CCCGC 1 cut(s) 406
FauNDI CATATG 1 cut(s) 914
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 9 cut(s) 48, 593, 636, 701, 711, 776, 1224, 1483, 1625
FokI GGATG 5 cut(s) 148, 436, 524, 737, 1217
FriOI GRGCYC 3 cut(s) 163, 171, 285
Fsp4HI GCNGC 9 cut(s) 48, 593, 636, 701, 711, 776, 1224, 1483, 1625
FspBI CTAG 4 cut(s) 789, 972, 1220, 1379
GluI GCNGC 9 cut(s) 48, 593, 636, 701, 711, 776, 1224, 1483, 1625
GsuI CTGGAG 2 cut(s) 432, 491
HaeIII GGCC 2 cut(s) 38, 686
HapII CCGG 3 cut(s) 421, 779, 830
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 88, 352, 385, 1024, 1187, 1400
HindIII AAGCTT 1 cut(s) 1343
HinfI GANTC 9 cut(s) 215, 252, 499, 754, 805, 959, 985, 1000, 1580
HpaII CCGG 3 cut(s) 421, 779, 830
HphI GGTGA 2 cut(s) 622, 1121
Hpy166II GTNNAC 1 cut(s) 794
Hpy188III TCNNGA 5 cut(s) 349, 365, 382, 449, 470
Hpy8I GTNNAC 1 cut(s) 794
Hpy99I CGWCG 2 cut(s) 55, 68
HpyAV CCTTC 4 cut(s) 652, 795, 1195, 1507
HpyCH4III ACNGT 7 cut(s) 15, 362, 844, 895, 1132, 1374, 1603
HpyCH4IV ACGT 2 cut(s) 63, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 56, 700, 977
HpyF3I CTNAG 5 cut(s) 639, 741, 797, 1177, 1541
HpySE526I ACGT 2 cut(s) 63, 835
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 88, 352, 385, 1024, 1187, 1400
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 5 cut(s) 325, 745, 772, 1124, 1172
Lsp1109I GCAGC 7 cut(s) 59, 647, 697, 787, 1235, 1494, 1611
LweI GCATC 5 cut(s) 452, 727, 1444, 1489, 1569
MaeI CTAG 4 cut(s) 789, 972, 1220, 1379
MaeII ACGT 2 cut(s) 63, 835
MaeIII GTNAC 3 cut(s) 838, 982, 1142
MalI GATC 7 cut(s) 114, 339, 947, 1084, 1539, 1620, 1651
MboI GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 6 cut(s) 143, 163, 171, 285, 607, 829
MlyI GAGTC 5 cut(s) 246, 763, 799, 979, 1589
MmeI TCCRAC 2 cut(s) 213, 1168
Mph1103I ATGCAT 1 cut(s) 1562
MroXI GAANNNNTTC 2 cut(s) 296, 1357
MseI TTAA 6 cut(s) 312, 942, 1035, 1088, 1322, 1487
MspA1I CMGCKG 3 cut(s) 638, 1250, 1624
MspCI CTTAAG 1 cut(s) 1034
MspI CCGG 3 cut(s) 421, 779, 830
MspR9I CCNGG 2 cut(s) 456, 831
MvaI CCWGG 1 cut(s) 456
MvnI CGCG 2 cut(s) 207, 366
MwoI GCNNNNNNNGC 4 cut(s) 44, 56, 700, 977
NciI CCSGG 1 cut(s) 831
NdeI CATATG 1 cut(s) 914
NdeII GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
NlaIII CATG 6 cut(s) 88, 352, 385, 1024, 1187, 1400
NlaIV GGNNCC 3 cut(s) 828, 1174, 1376
NmuCI GTSAC 2 cut(s) 838, 982
NruI TCGCGA 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 1562
NspI RCATGY 1 cut(s) 1024
PaeR7I CTCGAG 2 cut(s) 306, 1634
PagI TCATGA 2 cut(s) 348, 381
PciI ACATGT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 1136
PdmI GAANNNNTTC 2 cut(s) 296, 1357
PfeI GAWTC 4 cut(s) 215, 499, 959, 1000
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 9 cut(s) 49, 594, 637, 702, 712, 777, 1225, 1484, 1626
PleI GAGTC 5 cut(s) 246, 762, 799, 979, 1588
PpsI GAGTC 5 cut(s) 246, 762, 799, 979, 1588
PscI ACATGT 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 828, 1174, 1376
PspPI GGNCC 5 cut(s) 37, 145, 918, 1190, 1374
PspXI VCTCGAGB 2 cut(s) 306, 1634
PstNI CAGNNNCTG 3 cut(s) 360, 455, 1502
PsuI RGATCY 1 cut(s) 1082
PvuII CAGCTG 3 cut(s) 638, 1250, 1624
RruI TCGCGA 1 cut(s) 366
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 6 cut(s) 312, 942, 1035, 1088, 1322, 1487
SatI GCNGC 9 cut(s) 48, 593, 636, 701, 711, 776, 1224, 1483, 1625
Sau3AI GATC 7 cut(s) 112, 337, 945, 1082, 1537, 1618, 1649
Sau96I GGNCC 5 cut(s) 37, 145, 918, 1190, 1374
SchI GAGTC 5 cut(s) 246, 763, 799, 979, 1589
ScrFI CCNGG 2 cut(s) 456, 831
SduI GDGCHC 6 cut(s) 143, 163, 171, 285, 607, 829
SfaNI GCATC 5 cut(s) 452, 727, 1444, 1489, 1569
SfcI CTRYAG 1 cut(s) 843
Sfr274I CTCGAG 2 cut(s) 306, 1634
SinI GGWCC 4 cut(s) 145, 918, 1190, 1374
SlaI CTCGAG 2 cut(s) 306, 1634
SmlI CTYRAG 4 cut(s) 306, 1034, 1577, 1634
SmoI CTYRAG 4 cut(s) 306, 1034, 1577, 1634
SsiI CCGC 4 cut(s) 205, 413, 593, 700
SspMI CTAG 4 cut(s) 789, 972, 1220, 1379
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 454, 829
TaaI ACNGT 7 cut(s) 15, 362, 844, 895, 1132, 1374, 1603
TaiI ACGT 2 cut(s) 66, 838
TaqI TCGA 6 cut(s) 176, 300, 307, 948, 1139, 1635
TauI GCSGC 2 cut(s) 595, 703
TfiI GAWTC 4 cut(s) 215, 499, 959, 1000
Tru1I TTAA 6 cut(s) 312, 942, 1035, 1088, 1322, 1487
Tru9I TTAA 6 cut(s) 312, 942, 1035, 1088, 1322, 1487
TscAI CASTG 5 cut(s) 483, 673, 847, 900, 987
TseFI GTSAC 2 cut(s) 838, 982
TseI GCWGC 7 cut(s) 47, 635, 710, 775, 1223, 1482, 1624
Tsp45I GTSAC 2 cut(s) 838, 982
TspDTI ATGAA 4 cut(s) 365, 370, 398, 671
TspGWI ACGGA 3 cut(s) 68, 158, 332
TspRI CASTG 5 cut(s) 483, 673, 847, 900, 987
Van91I CCANNNNNTGG 1 cut(s) 455
Vha464I CTTAAG 1 cut(s) 1034
VpaK11BI GGWCC 4 cut(s) 145, 918, 1190, 1374
XagI CCTNNNNNAGG 1 cut(s) 206
XapI RAATTY 3 cut(s) 866, 1159, 1273
XceI RCATGY 1 cut(s) 1024
XhoI CTCGAG 2 cut(s) 306, 1634
XmnI GAANNNNTTC 2 cut(s) 296, 1357
XspI CTAG 4 cut(s) 789, 972, 1220, 1379
ZraI GACGTC 1 cut(s) 64
Zsp2I ATGCAT 1 cut(s) 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.