Rmu_sc0000832.1_g000001

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000832.1
OG0000126
Physical Location & Seq
Reverse (-)
281 .. 1357
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000832.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
atgcaagggtctttgacgtattactggagaaatggagatgttagttccaaagaaaaggttgtatctggtaatattactctattgaagattctaatgggactatcaacacatgttggacctcatctgaaagaaaatgcaacaaatctagcatcccagtggaaagaaaagttgagagctgatactgaagattcatcggagagtttgggatatttgctgtttatagctatgtatggattgcttggaaccttacgtgaagatgagattgtaatgcttcttagaagggtttcgcagcataagcggtcacagatgatacctgatgaaaaggataaggctctggatggtaaaatatctgatctcagagctgccattcaatgcatcaaagactacaaccttgagtctgaatacccgtccaagactgttgaattgcaaatagttcagcttgatgaaatgcgcaaggaaaaatggagaagtttggaaccatctctagtacccaaagttgaacaagaagagagaaaaaggaagaagccttgtactagctcttctgccccaaagttacaaccacgaaaggtgccgaaaataaaattcgtcttcagtggttcgagaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

202

Amino Acids

23.11

Weight (kDa)

9.39

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 568
AciI CCGC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 2 cut(s) 204, 574
AfaI GTAC 2 cut(s) 489, 532
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 4 cut(s) 85, 371, 422, 500
AluBI AGCT 5 cut(s) 176, 224, 362, 439, 537
AluI AGCT 5 cut(s) 176, 224, 362, 439, 537
Alw26I GTCTC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 289, 362
ApoI RAATTY 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 568
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BbsI GAAGAC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 301, 349
BccI CCATC 2 cut(s) 332, 487
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 3 cut(s) 146, 485, 534
BisI GCNGC 2 cut(s) 290, 363
BlsI GCNGC 2 cut(s) 291, 364
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 244, 477, 570
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 158, 384
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 29, 154
BseGI GGATG 2 cut(s) 149, 343
BseMII CTCAG 1 cut(s) 370
BseNI ACTGG 2 cut(s) 29, 154
BseXI GCAGC 2 cut(s) 301, 349
BshNI GGYRCC 1 cut(s) 568
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 595
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 3 cut(s) 244, 477, 570
BspQI GCTCTTC 1 cut(s) 544
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 595
BsrI ACTGG 2 cut(s) 29, 154
BssMI GATC 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 501, 544
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 275, 356
BstF5I GGATG 2 cut(s) 149, 343
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 301, 349
BstV2I GAAGAC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 149, 343
BtsIMutI CAGTG 2 cut(s) 161, 598
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 488, 531
CviAII CATG 1 cut(s) 110
CviJI RGCY 7 cut(s) 176, 224, 332, 362, 439, 526, 537
CviKI_1 RGCY 7 cut(s) 176, 224, 332, 362, 439, 526, 537
CviQI GTAC 2 cut(s) 488, 531
DdeI CTNAG 2 cut(s) 275, 356
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 501, 544
EarI CTCTTC 2 cut(s) 501, 544
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 204, 574
EcoT22I ATGCAT 1 cut(s) 377
FaeI CATG 1 cut(s) 113
FaiI YATR 5 cut(s) 111, 221, 227, 231, 294
FaqI GGGAC 1 cut(s) 111
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 290, 363
FokI GGATG 2 cut(s) 136, 350
Fsp4HI GCNGC 2 cut(s) 290, 363
FspBI CTAG 3 cut(s) 146, 485, 534
FspI TGCGCA 1 cut(s) 452
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 290, 363
GsuI CTGGAG 1 cut(s) 46
HhaI GCGC 1 cut(s) 453
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 3 cut(s) 88, 188, 395
Hpy188I TCNGA 5 cut(s) 126, 196, 352, 359, 400
Hpy188III TCNNGA 2 cut(s) 335, 600
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 2 cut(s) 17, 250
HpyCH4V TGCA 4 cut(s) 4, 137, 375, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 275, 356
HpySE526I ACGT 2 cut(s) 17, 250
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 451
Kzo9I GATC 1 cut(s) 352
LguI GCTCTTC 1 cut(s) 544
LpnPI CCDG 5 cut(s) 10, 51, 167, 320, 327
Lsp1109I GCAGC 2 cut(s) 301, 349
LweI GCATC 2 cut(s) 158, 384
MaeI CTAG 3 cut(s) 146, 485, 534
MaeII ACGT 2 cut(s) 17, 250
MaeIII GTNAC 2 cut(s) 300, 552
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 7 cut(s) 97, 197, 266, 518, 531, 532, 580
MluCI AATT 2 cut(s) 422, 581
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 1 cut(s) 607
MslI CAYNNNNRTG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 1 cut(s) 352
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 3 cut(s) 244, 477, 570
NmuCI GTSAC 1 cut(s) 300
NsbI TGCGCA 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 113
PciI ACATGT 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 2 cut(s) 88, 188
PkrI GCNGC 2 cut(s) 291, 364
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 251
PscI ACATGT 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 244, 477, 570
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 2 cut(s) 489, 532
RsaNI GTAC 2 cut(s) 488, 531
RseI CAYNNNNRTG 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 544
SaqAI TTAA 1 cut(s) 607
SatI GCNGC 2 cut(s) 290, 363
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 404
SfaNI GCATC 2 cut(s) 158, 384
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 422, 581
SsiI CCGC 1 cut(s) 298
SspI AATATT 1 cut(s) 73
SspMI CTAG 3 cut(s) 146, 485, 534
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 2 cut(s) 20, 253
TaqI TCGA 1 cut(s) 599
TasI AATT 2 cut(s) 422, 581
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 2 cut(s) 88, 188
Tru1I TTAA 1 cut(s) 607
Tru9I TTAA 1 cut(s) 607
TscAI CASTG 2 cut(s) 161, 598
TseFI GTSAC 1 cut(s) 300
TseI GCWGC 2 cut(s) 289, 362
Tsp45I GTSAC 1 cut(s) 300
TspDTI ATGAA 3 cut(s) 180, 333, 459
TspRI CASTG 2 cut(s) 161, 598
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 581
XceI RCATGY 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 3 cut(s) 146, 485, 534
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.