RLG00000025545

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000126
Physical Location & Seq
Reverse (-)
46577791 .. 46581078
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025545

Sequence Viewer

Length: 2298 bp
ATGGAAGAGACGATCTCGGATTTGAAAGAATCGGAGGTGAACCACATTGCTCTGGCCGAAGCATTCGAGAATTTGCGAGCCCGCTGCAAGCAAATTGGGGACCAGTTCAGCTCGACCCGGACCACAATCTCGACCCGCTTCAAAGAGCTCCAGACCCGCGAGGAGGAAATCGGGCGCCGGGAGAAGCTTCTGGAAGAGAAAGAGTCCGGCTTTAAGTCGAAGGAGGAGGAGTTGGATGCAATTGAGGAGGCCATTACAGAGAAGCTACTGGAGTTTGAAGAAGGTAAGACCCAATTGGAAAGACTTAATTTTTCGATTGATGATAAAGAGAGGAGGGTTTTGGAAATTGAGGAATTGATTAGGGTAAAAGAGAGGGAGTATGATTTGATCGAAAATCGTATCAAAAAGGGCACCAATATGATGATTAGGATTGAGGAGAGTATTAAAGAAATGGATTTGAAGGTGAAAGGTTTTGACTTGCATAAGAAAGAAATGGAGGATTGGAGCAGCAAGCTTGAATTGAAAGAGAAGGAACTAGAGGGGTTGTTTGAGAAGCTTAGATTAAAAGAGGCGTTATTAGAACCAAATGTTGTAGAGCTTCATGTTCTTGCTAACAGCGTCGAAGAATGCCTCAATGAAGCTCAGAGGAGGGAGAGGGAAGTTGAATTGAAAGAGAGACGAGTTGAATTCAAAGTTAAGGAAGTAGAGTTGGCTGAGATGAGGGTCAATGAGTGCCTCAATGAAGCTCAGAGGAAAGAGAGGGAAGTTGAATTGAAAGAGAGACGAGTTGAATCAAGAGTTAAGGCAGTTGAGTTGGCTGAGATGAGGGTCAATGAGTGCCTCAATGAAGCTCACAGGAAAGAGAAGGAAGTTGAATCGAAAGAGAGACGAGTTGAATCGAAAGTTAAGGAACTTGAGTTGACTGAGGTGAGGGTCAAGGAACGCCTCAATAAGGTTGAATTGAAAGAAGAGCATTTTTGTTTAATGGAGAAGTTGATAGAAGAAAACAAAAGACGTTTGGATGTACTCATGAAGACTTCAGAAGAGCGGGAAAAACACTTGGATTCACTCCAAAAGTCGGTGGAAGAGCGCGAAAGGAATTTGGATTTGGTATCTGATGAACTTAAAAGGAAAGAGAGGGAATTTCAACAGCGGGCCGAAGCGCTTGAATTGAACTGGGCGCAATTTGATTCGCCAGGGAAGATTCAGCAGTTGGAATATACACCTGGGGTTGACAATGCGGTTGTTTCTTCATCTGTGACCAACAACATTTCTTCCCTTGTCAAAGCGGACGAACCAGAATCTTCAGTGTCTAAAAATGCAGCAAGTTTTCTTTCCTCAAATCTTCAACCAAATGCCACCAGTGATGAAGGATATGTCCCAGGGTTTCTAAATGAGAATTTAACTGGGAATAATTTCATAGATAATGAATTGGCTGCTTCTCTTCGGTTGTTACAAGACCCAGCTAAACTCGTGTTATATAATATGCAAAAATCCCTTGATCAGTACTTAAGAAATGGATATTTTGAAGAAAGTATAATGTCAGGTAACCTTTCCATATTGAAGGAGCTAATGAGTATTTCACCACATGTTGGATCTCATCTGAAAGTAGATGCAACATATCTAGCAGCCCAGTGGAAAACAAAGATGAGAGGCAATACCGAAAATTCAGTGGAGAGTTTGGCATTCTTGTTGTTTATAACTCTGTATGGATTGGTTTCTATGTTGAATGTAGATGAGATAGTAAAGCTTCTTGGGTTGATTTCTCAGAATAAAAGGGCTCTAGAATTATGTCAGACACATGCTTTTGCAATTAAGATCGCTGATCTTATTCGCAGTCTTATTGAAAGGAAGCAGCTGCCTGTGGCTGTTAGATGTATTTGCATGCTCAAGTTAACTGACATGCTCCCCCTAGTACCACTCCTAGAAGAGTATGTGCAGGATGCAATGGAAAGTTTCAAAGAAATTTGTGGGTTAAGGATTACCCCTGATGAAAAGGTCAAGGTTTTTAAAAAACAAATAGCTGATGCAAGAGCTTTGGTTCAATGCCTCAAAGATTACAACCTTGGATCCGAACACCCGTCCAATGCCATTGAAATACAAATAGTTCAGCTGGAAACACTGGCGGAGAATTGGAGACTTTTGGTGCCGCCTCTTTGTCCCAGTATCATTGATCAACACAAGGACGGAAAAAGAAAGAAGCATAATACTAACACTTCTGACCCTGAGTTCCAACCACAACAGCAGCGTAAAATAAAGTTCGTCATTCGTGGTACTGGACCCAGGACCCTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

766

Amino Acids

88.78

Weight (kDa)

5.38

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 463 - 708 1.8e-39 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1700
AccB1I GGYRCC 3 cut(s) 174, 410, 2146
AccB7I CCANNNNNTGG 1 cut(s) 1592
AccBSI CCGCTC 1 cut(s) 1048
AccII CGCG 2 cut(s) 159, 1092
AciI CCGC 9 cut(s) 82, 136, 157, 1048, 1153, 1241, 1289, 2126, 2150
AclWI GGATC 3 cut(s) 1603, 2064, 2077
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 7 cut(s) 70, 686, 1099, 1142, 1399, 1666, 1965
AcuI CTGAAG 2 cut(s) 1023, 1290
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 4 cut(s) 1026, 1508, 1917, 2275
AfeI AGCGCT 1 cut(s) 1164
AfiI CCNNNNNNNGG 4 cut(s) 163, 952, 1078, 1592
AflII CTTAAG 1 cut(s) 1510
AflIII ACRYGT 1 cut(s) 1588
AjnI CCWGG 4 cut(s) 1195, 1225, 1381, 2282
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 5 cut(s) 2, 670, 775, 880, 2131
AlwI GGATC 3 cut(s) 1603, 2064, 2077
Aor51HI AGCGCT 1 cut(s) 1164
AoxI GGCC 3 cut(s) 54, 249, 1155
ApeKI GCWGC 8 cut(s) 84, 507, 1322, 1436, 1628, 1855, 1858, 2245
ApoI RAATTY 7 cut(s) 70, 686, 1099, 1142, 1399, 1666, 1965
Asp700I GAANNNNTTC 1 cut(s) 1415
AspLEI GCGC 4 cut(s) 177, 1092, 1165, 1183
AspS9I GGNCC 5 cut(s) 100, 120, 1155, 2279, 2286
AsuC2I CCSGG 2 cut(s) 118, 179
AsuHPI GGTGA 4 cut(s) 49, 475, 940, 1575
AvaII GGWCC 4 cut(s) 100, 120, 2279, 2286
BaeGI GKGCMC 1 cut(s) 413
BamHI GGATCC 1 cut(s) 2069
BanI GGYRCC 3 cut(s) 174, 410, 2146
BanII GRGCYC 3 cut(s) 82, 150, 1783
BauI CACGAG 1 cut(s) 1472
BbsI GAAGAC 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 8 cut(s) 71, 519, 1334, 1423, 1640, 1845, 1867, 2257
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 4 cut(s) 1197, 1227, 1383, 2284
BclI TGATCA 2 cut(s) 1501, 2173
BcnI CCSGG 2 cut(s) 118, 179
BcoDI GTCTC 5 cut(s) 2, 670, 775, 880, 2131
BfaI CTAG 6 cut(s) 536, 1625, 1784, 1913, 1925, 2291
BfoI RGCGCY 2 cut(s) 178, 1166
BfrI CTTAAG 1 cut(s) 1510
BisI GCNGC 9 cut(s) 85, 508, 1323, 1437, 1629, 1856, 1859, 2150, 2246
BlsI GCNGC 9 cut(s) 86, 509, 1324, 1438, 1630, 1857, 1860, 2151, 2247
BmcAI AGTACT 1 cut(s) 1508
Bme1390I CCNGG 6 cut(s) 118, 179, 1197, 1227, 1383, 2284
Bme18I GGWCC 4 cut(s) 100, 120, 2279, 2286
BmgT120I GGNCC 5 cut(s) 100, 120, 1155, 2279, 2286
BmiI GGNNCC 7 cut(s) 101, 176, 412, 2071, 2148, 2281, 2288
BmrFI CCNGG 6 cut(s) 118, 179, 1197, 1227, 1383, 2284
BmrI ACTGGG 4 cut(s) 1186, 1416, 1627, 2157
BmsI GCATC 4 cut(s) 226, 1603, 1933, 2017
BmuI ACTGGG 4 cut(s) 1186, 1416, 1627, 2157
BpiI GAAGAC 1 cut(s) 1040
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 134, 290
BpuEI CTTGAG 2 cut(s) 935, 1874
BpuMI CCSGG 2 cut(s) 118, 179
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 6 cut(s) 1196, 1226, 1381, 1382, 2065, 2282
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 952, 1078, 1592
Bse1I ACTGG 9 cut(s) 103, 273, 1181, 1362, 1411, 1633, 2127, 2163, 2281
Bse3DI GCAATG 2 cut(s) 45, 1953
BseBI CCWGG 4 cut(s) 1197, 1227, 1383, 2284
BseDI CCNNGG 6 cut(s) 1196, 1226, 1381, 1382, 2065, 2282
BseGI GGATG 3 cut(s) 241, 1027, 1948
BseLI CCNNNNNNNGG 4 cut(s) 163, 952, 1078, 1592
BseMI GCAATG 2 cut(s) 45, 1953
BseMII CTCAG 7 cut(s) 656, 705, 761, 810, 915, 1781, 2217
BseNI ACTGG 9 cut(s) 103, 273, 1181, 1362, 1411, 1633, 2127, 2163, 2281
BseRI GAGGAG 7 cut(s) 176, 239, 242, 260, 346, 449, 661
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 8 cut(s) 71, 519, 1334, 1423, 1640, 1845, 1867, 2257
BseYI CCCAGC 1 cut(s) 1462
BsgI GTGCAG 1 cut(s) 1958
Bsh1236I CGCG 2 cut(s) 159, 1092
BshFI GGCC 3 cut(s) 56, 251, 1157
BshNI GGYRCC 3 cut(s) 174, 410, 2146
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 118, 178, 207
BslFI GGGAC 3 cut(s) 113, 1364, 2145
BslI CCNNNNNNNGG 4 cut(s) 163, 952, 1078, 1592
BsmAI GTCTC 5 cut(s) 2, 670, 775, 880, 2131
BsmBI CGTCTC 4 cut(s) 2, 670, 775, 880
BsmFI GGGAC 3 cut(s) 113, 1364, 2145
BsmI GAATGC 3 cut(s) 62, 632, 1685
BsnI GGCC 3 cut(s) 56, 251, 1157
Bsp1286I GDGCHC 4 cut(s) 82, 150, 413, 1783
Bsp143I GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
BspACI CCGC 9 cut(s) 82, 136, 157, 1048, 1153, 1241, 1289, 2126, 2150
BspANI GGCC 3 cut(s) 56, 251, 1157
BspCNI CTCAG 7 cut(s) 655, 706, 760, 811, 916, 1780, 2218
BspFNI CGCG 2 cut(s) 159, 1092
BspHI TCATGA 1 cut(s) 1029
BspLI GGNNCC 7 cut(s) 101, 176, 412, 2071, 2148, 2281, 2288
BspPI GGATC 3 cut(s) 1603, 2064, 2077
BspQI GCTCTTC 3 cut(s) 963, 1038, 1080
BspT107I GGYRCC 3 cut(s) 174, 410, 2146
BspTI CTTAAG 1 cut(s) 1510
BsrBI CCGCTC 1 cut(s) 1048
BsrDI GCAATG 2 cut(s) 45, 1953
BsrI ACTGG 9 cut(s) 103, 273, 1181, 1362, 1411, 1633, 2127, 2163, 2281
BssECI CCNNGG 6 cut(s) 1196, 1226, 1381, 1382, 2065, 2282
BssMI GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
BssNI GRCGYC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 1472
BssT1I CCWWGG 1 cut(s) 2065
Bst2BI CACGAG 1 cut(s) 1472
Bst2UI CCWGG 4 cut(s) 1197, 1227, 1383, 2284
Bst6I CTCTTC 6 cut(s) 189, 963, 1038, 1080, 1449, 1923
BstACI GRCGYC 1 cut(s) 175
BstAFI CTTAAG 1 cut(s) 1510
BstC8I GCNNGC 6 cut(s) 78, 82, 89, 512, 1155, 1886
BstDEI CTNAG 8 cut(s) 557, 642, 714, 747, 819, 924, 1767, 2226
BstEII GGTNACC 1 cut(s) 1547
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 241, 1027, 1948
BstFNI CGCG 2 cut(s) 159, 1092
BstH2I RGCGCY 2 cut(s) 178, 1166
BstHHI GCGC 4 cut(s) 177, 1092, 1165, 1183
BstKTI GATC 8 cut(s) 15, 390, 1504, 1598, 1821, 1828, 2072, 2176
BstMAI GTCTC 5 cut(s) 2, 670, 775, 880, 2131
BstMBI GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
BstNI CCWGG 4 cut(s) 1197, 1227, 1383, 2284
BstNSI RCATGY 4 cut(s) 1592, 1805, 1888, 1906
BstPI GGTNACC 1 cut(s) 1547
BstSCI CCNGG 6 cut(s) 116, 177, 1195, 1225, 1381, 2282
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 2 cut(s) 159, 1092
BstV1I GCAGC 8 cut(s) 71, 519, 1334, 1423, 1640, 1845, 1867, 2257
BstV2I GAAGAC 1 cut(s) 1040
BstX2I RGATCY 2 cut(s) 1595, 2069
BstYI RGATCY 2 cut(s) 1595, 2069
BsuRI GGCC 3 cut(s) 56, 251, 1157
BtsCI GGATG 3 cut(s) 241, 1027, 1948
BtsIMutI CAGTG 5 cut(s) 1314, 1369, 1640, 1677, 2120
Cac8I GCNNGC 6 cut(s) 78, 82, 89, 512, 1155, 1886
CciI TCATGA 1 cut(s) 1029
CfoI GCGC 4 cut(s) 177, 1092, 1165, 1183
Cfr13I GGNCC 5 cut(s) 100, 120, 1155, 2279, 2286
CseI GACGC 1 cut(s) 607
Csp6I GTAC 4 cut(s) 1025, 1507, 1916, 2274
CviAII CATG 6 cut(s) 602, 1030, 1589, 1802, 1885, 1903
CviQI GTAC 4 cut(s) 1025, 1507, 1916, 2274
DdeI CTNAG 8 cut(s) 557, 642, 714, 747, 819, 924, 1767, 2226
DinI GGCGCC 1 cut(s) 176
DpnI GATC 8 cut(s) 14, 389, 1503, 1597, 1820, 1827, 2071, 2175
DpnII GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
DraI TTTAAA 1 cut(s) 2011
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 6 cut(s) 189, 963, 1038, 1080, 1449, 1923
EarI CTCTTC 6 cut(s) 189, 963, 1038, 1080, 1449, 1923
EciI GGCGGA 1 cut(s) 2141
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 2065
Eco24I GRGCYC 3 cut(s) 82, 150, 1783
Eco47I GGWCC 4 cut(s) 100, 120, 2279, 2286
Eco47III AGCGCT 1 cut(s) 1164
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 1023, 1290
Eco91I GGTNACC 1 cut(s) 1547
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 2286
EcoO65I GGTNACC 1 cut(s) 1547
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 4 cut(s) 1195, 1225, 1381, 2282
EcoT14I CCWWGG 1 cut(s) 2065
EcoT38I GRGCYC 3 cut(s) 82, 150, 1783
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 2065
Esp3I CGTCTC 4 cut(s) 2, 670, 775, 880
FaeI CATG 6 cut(s) 605, 1033, 1592, 1805, 1888, 1906
FaqI GGGAC 3 cut(s) 113, 1364, 2145
FatI CATG 6 cut(s) 601, 1029, 1588, 1801, 1884, 1902
FauI CCCGC 5 cut(s) 89, 143, 164, 1041, 1146
FbaI TGATCA 2 cut(s) 1501, 2173
Fnu4HI GCNGC 9 cut(s) 85, 508, 1323, 1437, 1629, 1856, 1859, 2150, 2246
FokI GGATG 3 cut(s) 248, 1034, 1955
FriOI GRGCYC 3 cut(s) 82, 150, 1783
Fsp4HI GCNGC 9 cut(s) 85, 508, 1323, 1437, 1629, 1856, 1859, 2150, 2246
FspBI CTAG 6 cut(s) 536, 1625, 1784, 1913, 1925, 2291
GlaI GCGC 4 cut(s) 176, 1091, 1164, 1182
GluI GCNGC 9 cut(s) 85, 508, 1323, 1437, 1629, 1856, 1859, 2150, 2246
GsaI CCCAGC 1 cut(s) 1466
GsuI CTGGAG 2 cut(s) 134, 290
HaeII RGCGCY 2 cut(s) 178, 1166
HaeIII GGCC 3 cut(s) 56, 251, 1157
HapII CCGG 3 cut(s) 118, 178, 207
HgaI GACGC 1 cut(s) 607
HhaI GCGC 4 cut(s) 177, 1092, 1165, 1183
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 6 cut(s) 605, 1033, 1592, 1805, 1888, 1906
Hin6I GCGC 4 cut(s) 175, 1090, 1163, 1181
HinP1I GCGC 4 cut(s) 175, 1090, 1163, 1181
HincII GTYRAC 3 cut(s) 921, 1234, 1896
HindII GTYRAC 3 cut(s) 921, 1234, 1896
HindIII AAGCTT 4 cut(s) 185, 512, 554, 1748
HinfI GANTC 9 cut(s) 29, 203, 791, 875, 896, 1064, 1190, 1204, 1301
HpaI GTTAAC 1 cut(s) 1896
HpaII CCGG 3 cut(s) 118, 178, 207
HphI GGTGA 4 cut(s) 49, 475, 940, 1575
Hpy166II GTNNAC 4 cut(s) 40, 921, 1234, 1896
Hpy188III TCNNGA 7 cut(s) 67, 130, 151, 191, 795, 1030, 1784
Hpy8I GTNNAC 4 cut(s) 40, 921, 1234, 1896
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 7 cut(s) 214, 275, 454, 523, 859, 1364, 1558
HpyCH4IV ACGT 1 cut(s) 1015
HpyF3I CTNAG 8 cut(s) 557, 642, 714, 747, 819, 924, 1767, 2226
HpySE526I ACGT 1 cut(s) 1015
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 6 cut(s) 605, 1033, 1592, 1805, 1888, 1906
HspAI GCGC 4 cut(s) 175, 1090, 1163, 1181
KasI GGCGCC 1 cut(s) 174
Ksp22I TGATCA 2 cut(s) 1501, 2173
KspAI GTTAAC 1 cut(s) 1896
Kzo9I GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
LguI GCTCTTC 3 cut(s) 963, 1038, 1080
LmnI GCTCC 4 cut(s) 153, 504, 1567, 1911
Lsp1109I GCAGC 8 cut(s) 71, 519, 1334, 1423, 1640, 1845, 1867, 2257
LweI GCATC 4 cut(s) 226, 1603, 1933, 2017
MaeI CTAG 6 cut(s) 536, 1625, 1784, 1913, 1925, 2291
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 3 cut(s) 1258, 1452, 1547
MalI GATC 8 cut(s) 14, 389, 1503, 1597, 1820, 1827, 2071, 2175
MbiI CCGCTC 1 cut(s) 1048
MboI GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
MfeI CAATTG 2 cut(s) 240, 293
MflI RGATCY 2 cut(s) 1595, 2069
MhlI GDGCHC 4 cut(s) 82, 150, 413, 1783
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 4 cut(s) 213, 1194, 1573, 2257
MroXI GAANNNNTTC 1 cut(s) 1415
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 4 cut(s) 84, 1153, 1858, 2113
MspCI CTTAAG 1 cut(s) 1510
MspI CCGG 3 cut(s) 118, 178, 207
MspR9I CCNGG 6 cut(s) 118, 179, 1197, 1227, 1383, 2284
MunI CAATTG 2 cut(s) 240, 293
Mva1269I GAATGC 3 cut(s) 62, 632, 1685
MvaI CCWGG 4 cut(s) 1197, 1227, 1383, 2284
MvnI CGCG 2 cut(s) 159, 1092
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 2 cut(s) 118, 179
NdeII GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
NlaIII CATG 6 cut(s) 605, 1033, 1592, 1805, 1888, 1906
NlaIV GGNNCC 7 cut(s) 101, 176, 412, 2071, 2148, 2281, 2288
NmuCI GTSAC 1 cut(s) 1258
NspI RCATGY 4 cut(s) 1592, 1805, 1888, 1906
PaeI GCATGC 1 cut(s) 1888
PagI TCATGA 1 cut(s) 1029
PasI CCCWGGG 1 cut(s) 1382
PciI ACATGT 1 cut(s) 1588
PciSI GCTCTTC 3 cut(s) 963, 1038, 1080
PctI GAATGC 3 cut(s) 62, 632, 1685
PdmI GAANNNNTTC 1 cut(s) 1415
PfeI GAWTC 8 cut(s) 29, 791, 875, 896, 1064, 1190, 1204, 1301
PflMI CCANNNNNTGG 1 cut(s) 1592
PkrI GCNGC 9 cut(s) 86, 509, 1324, 1438, 1630, 1857, 1860, 2151, 2247
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 2286
PscI ACATGT 1 cut(s) 1588
PsiI TTATAA 1 cut(s) 1700
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 2286
Psp6I CCWGG 4 cut(s) 1195, 1225, 1381, 2282
PspEI GGTNACC 1 cut(s) 1547
PspFI CCCAGC 1 cut(s) 1462
PspGI CCWGG 4 cut(s) 1195, 1225, 1381, 2282
PspN4I GGNNCC 7 cut(s) 101, 176, 412, 2071, 2148, 2281, 2288
PspPI GGNCC 5 cut(s) 100, 120, 1155, 2279, 2286
PspPPI RGGWCCY 1 cut(s) 2286
PsuI RGATCY 2 cut(s) 1595, 2069
PvuII CAGCTG 2 cut(s) 1858, 2113
RsaI GTAC 4 cut(s) 1026, 1508, 1917, 2275
RsaNI GTAC 4 cut(s) 1025, 1507, 1916, 2274
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 3 cut(s) 963, 1038, 1080
SatI GCNGC 9 cut(s) 85, 508, 1323, 1437, 1629, 1856, 1859, 2150, 2246
Sau3AI GATC 8 cut(s) 12, 387, 1501, 1595, 1818, 1825, 2069, 2173
Sau96I GGNCC 5 cut(s) 100, 120, 1155, 2279, 2286
ScaI AGTACT 1 cut(s) 1508
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 6 cut(s) 118, 179, 1197, 1227, 1383, 2284
SduI GDGCHC 4 cut(s) 82, 150, 413, 1783
SfaNI GCATC 4 cut(s) 226, 1603, 1933, 2017
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 4 cut(s) 100, 120, 2279, 2286
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 914, 1510, 1889
SmoI CTYRAG 3 cut(s) 914, 1510, 1889
SphI GCATGC 1 cut(s) 1888
SsiI CCGC 9 cut(s) 82, 136, 157, 1048, 1153, 1241, 1289, 2126, 2150
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 6 cut(s) 536, 1625, 1784, 1913, 1925, 2291
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 6 cut(s) 116, 177, 1195, 1225, 1381, 2282
StyI CCWWGG 1 cut(s) 2065
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 9 cut(s) 66, 113, 131, 218, 314, 390, 621, 878, 899
TatI WGTACW 2 cut(s) 1024, 1506
TauI GCSGC 1 cut(s) 2152
TfiI GAWTC 8 cut(s) 29, 791, 875, 896, 1064, 1190, 1204, 1301
TscAI CASTG 5 cut(s) 1314, 1369, 1640, 1677, 2127
TseFI GTSAC 1 cut(s) 1258
TseI GCWGC 8 cut(s) 84, 507, 1322, 1436, 1628, 1855, 1858, 2245
Tsp45I GTSAC 1 cut(s) 1258
TspGWI ACGGA 1 cut(s) 2202
TspRI CASTG 5 cut(s) 1314, 1369, 1640, 1677, 2127
Van91I CCANNNNNTGG 1 cut(s) 1592
Vha464I CTTAAG 1 cut(s) 1510
VpaK11BI GGWCC 4 cut(s) 100, 120, 2279, 2286
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 7 cut(s) 70, 686, 1099, 1142, 1399, 1666, 1965
XbaI TCTAGA 1 cut(s) 1783
XceI RCATGY 4 cut(s) 1592, 1805, 1888, 1906
XmnI GAANNNNTTC 1 cut(s) 1415
XspI CTAG 6 cut(s) 536, 1625, 1784, 1913, 1925, 2291
ZrmI AGTACT 1 cut(s) 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.