FvH4_6g04380

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000126
Physical Location & Seq
Forward (+)
2386163 .. 2390693
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04380.t1

Sequence Viewer

Length: 2895 bp
ATGGAGAAGATAGCCTCCGATTTGCAGGAGTCAGAATCGAAGCAGAGGAGCCTTGGCAAAGCACTGGAGACGTTGCAGTCTCAAGCTTCGTCTGCTTTGATGCTTTCTCTACAGTGGAAGGATTTAGAGGACCATTTTGAGTCGACCCGGGCCGAAATCCAGACCCGGTTCGAGGAGCTGAAGACCCGGGAGGCTGAGAAGGTGAAAGAGTTGGAGAAGGTGGAGGAGTTGATTGATCAAGGTAAGAAGCATTTGGGTTGTGTTGAGTTGTTGATTGAGAAAAAGGGTCATGAGGTTGAGGAGAAAGAGAGATTGGTGAAAGAGAAGGAGAGGGAGTTGGGTGTGGTGAAGAAGAAGTTGGGTGTGGTGAAGAAGAAGGTGAAATTTGAGGAGAGGGAGGTGGAGATGGTGGAGAGGGTGTTGGAGAAGTGTTGTGAGGAAATCGAGGCGAAAAAGAGGGAGTTGGGTGTGGTTTTGGGGGAGATTGAGGAGAAGAGGAAGGAGTTGGGTTTGGAAGAAGAGAAATTTAGGGTGGTGAGGAGTGGGGTTGAGGAGTGTGAGAAGGAAATGAGGGTGAAAGAGAAGAAACTAAGTTTGGCGAAGAAATCGATAGAAGAATGTGCAAAGGTGTTGGATGAGAAGGAGAAGATTGTTAGGGAGATGGATGAGAGAGTGGAGGGTAAGAAATCGATAGATGAATGGAAATGTAGGCTTGAGGCAAAAGAAAGTGAGCTAGAGGGATGGGCAGTGGGGCTTGCATTGAAGGAGAAGCAAGTTAAATCGAAATGGAAGGAACTTAGTATGATTGAAAAGAGGGTCTTGAAGAGTCTTAGTGAGGTTCAGATGAAAGAAAAGGATCTTGATGAGCAGAAGAAATTGATAGAAGAAGGCAGAAAGCATTTGGATTCACTCTCCAATAAGCTACAAATGAGAGAGTGGAAACTTCGGAATCAAGCAAAAGACCTTAAATTGGATAAACAAGAATGTGAAAAATCTACTAAAGAATACACAGAGGGTCAGAAATCGAAAGAGGAGCCTAATGTCCTCCATTCTGAATCTGAAGTAACTTGGGATGGTAGAGGCTTGCAGTTATTTATGAATGAGCAGCTGAAGATAATAGATTTAACGGGTACCAAAATGTCAGCTGTCCTGCAAGGTTCATCAGACCCGGCTAAACTAGTGTTGGATGCAATGCAAGGATTTCATTGCTCAAATACAAATATGAACAGCAGGGACACTGATTTTGATTTAGAAATTACTAGAAGGAGTTGTATTGTTTTACTGGAGGAGCTAAAGAGAATATCAGCACCAATCAGTCCTCCAGTTAAAGAAGAAGCCAAGAAGTTGGCTACTGAATGGAAGTGTAATTTGGCCACTGAGAATAGGTTGGAGATTTTGGGGTTTTTGCAGCTTGTTACTACTTATGAGTTGACATCTCTATATGATGCAAAGGAACTTCAAAGTCTTTTAGCTTTAATTGCTCAGCCCAAACAAGCAACTGAGAGCCAGCCCCTTGGTATCTCTGATGAGGCAAATGAAATCAGTATCAATCCTCCTTCTGTCAAAGATGAGGAACAAGAATCTTCACTGGCCAAAACAGTAACTTCTCCAAATTTTCAACCAAGTGCCACCGTACATGCAAGGAAATCTCCAGGGTTCCTAACTGAGCAAATGGTTTGGAAACATTCAATACAGAACAAAATTTTTGTTGCTCTTGAAAGTTCACCAAATTCAGACCCAGCAAAACTTTTGTTGGATTTGATGCAAGTATCCTTTGTTGGATACTGGACGAAAGGAGATGCTGGTTTTGAAGCAAATGCCATGAAGAGCTTCATTTCCCTATTAGAGACTATAAGAAGAGTCCAACCGCATGTTGGACCTCAGTTGAAAGAGAATGCAACGGAGTTAACTGTCCAATGGAAAACAAGACTGAGAGCTGATGCTGAAAACTCCTTGGAGATTTTGGGCTTTTTGCTGTTTATAGCTACATATGAATTACTTTCAACACTCACTACAGATGAGATTGCAAAGCTTCTTGCGATGATTTCTCAGCATACACATGCTCTAGAACTATGTCAGACACTTGGTTTTGCAGATATGTTCCCTCACTTCCCTGATTTTATTCTCGAGCTTGTTCAAAGCAAACAACTAGTTGAGGCTGTTAAATTAATTTGCACCTTCAAATTAACTGATAAATTCCCCCCAGCACCACTATTACATCAATATGTGGAGGATTCATGGAATCGTTTGAGTGAAAATTGCAGGACAAAGATATCACTTGATGAAAAGGAAAAGGTTGTAGATTGCCAAATAGCTGATCTAAGAGCAGTGATCCAATGCATCAGCAAATACAATCTTGAATCTGAATTCCAATCTGCACTTATTGAAGTACAAATAGACGAGCTGAAAAAACTTAAGGAGAATTGGAGACTCTCGGCACAATCTATTACCCCCCAGGTTGAACTACAAGAGCAGAGTATAGGGAAGAAGCGGAGTTGTCCTACCACTCCTACACCCATGTTTCAACCACAACAACAGCCTGAATATAATGCTCAGCTGACAGCCATATCAGTTGCTAGACCGCCACCCTATCCATCGCCTACTTGTATCCCAAGCTATCCACAGTCACATTCGATACCTCTGCTGCAAACTAATTTTGGAATTCCCGGGCAGTTTGTTATGCCTGTCAATGGCCACCCATTTGCCACGAGTTATGGAGGCCCGTTCATGCCAACTATTAAGCGCCCATGTATGATGAATCCTGGATACCAAGCCCCAGCCCCAGCCCCAGCTCCTGCCCTGGCTCCAACCCCAGTCCAAATGCATAGTGCTAATTACAGTGTACCATTCCAATTTCCTCACCCTAATATGAAGCAGTTCACAGGGAGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

965

Amino Acids

109.69

Weight (kDa)

5.84

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 357 - 501 3.3e-30 Frigida-like protein
Frigida PF07899 551 - 809 4e-51 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
Acc65I GGTACC 1 cut(s) 1130
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 1 cut(s) 143
AciI CCGC 3 cut(s) 1868, 2491, 2582
AclWI GGATC 2 cut(s) 864, 2326
AcoI YGGCCR 3 cut(s) 1371, 1590, 2692
AcsI RAATTY 8 cut(s) 383, 524, 1612, 1701, 1729, 2195, 2366, 2661
AcuI CTGAAG 3 cut(s) 200, 1080, 1130
AfaI GTAC 4 cut(s) 1132, 1635, 2391, 2844
AfiI CCNNNNNNNGG 4 cut(s) 172, 970, 1874, 2690
AflII CTTAAG 1 cut(s) 2414
AhlI ACTAGT 2 cut(s) 1177, 2149
AjnI CCWGG 4 cut(s) 1651, 2454, 2761, 2799
AjuI GAANNNNNNNTTGG 8 cut(s) 296, 328, 341, 373, 578, 610, 1352, 1384
Alw26I GTCTC 4 cut(s) 62, 84, 1841, 2422
AlwI GGATC 2 cut(s) 864, 2326
AlwNI CAGNNNCTG 1 cut(s) 2795
Ama87I CYCGRG 4 cut(s) 147, 186, 2126, 2666
AoxI GGCC 5 cut(s) 150, 1371, 1590, 2692, 2719
ApeKI GCWGC 3 cut(s) 1105, 1408, 2644
ApoI RAATTY 8 cut(s) 383, 524, 1612, 1701, 1729, 2195, 2366, 2661
ArsI GACNNNNNNTTYG 2 cut(s) 1226, 1258
AseI ATTAAT 1 cut(s) 2168
Asp700I GAANNNNTTC 2 cut(s) 1829, 2876
Asp718I GGTACC 1 cut(s) 1130
AspLEI GCGC 1 cut(s) 2745
AspS9I GGNCC 4 cut(s) 130, 150, 1877, 2720
AsuC2I CCSGG 8 cut(s) 148, 149, 166, 187, 188, 1169, 2667, 2668
AsuHPI GGTGA 9 cut(s) 214, 328, 358, 379, 391, 547, 586, 1716, 2852
AvaI CYCGRG 4 cut(s) 147, 186, 2126, 2666
AvaII GGWCC 2 cut(s) 130, 1877
BalI TGGCCA 3 cut(s) 1373, 1592, 2694
BanI GGYRCC 1 cut(s) 1130
BauI CACGAG 1 cut(s) 2707
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 1117, 1420, 2631
BccI CCATC 5 cut(s) 400, 655, 735, 1067, 2602
BcgI CGANNNNNNTGC 2 cut(s) 2623, 2657
BciT130I CCWGG 4 cut(s) 1653, 2456, 2763, 2801
BciVI GTATCC 4 cut(s) 1775, 1780, 2618, 2759
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 8 cut(s) 148, 149, 166, 187, 188, 1169, 2667, 2668
BcoDI GTCTC 4 cut(s) 62, 84, 1841, 2422
BcuI ACTAGT 2 cut(s) 1177, 2149
BfaI CTAG 6 cut(s) 734, 1178, 1260, 2066, 2150, 2577
BfmI CTRYAG 2 cut(s) 110, 2013
BfoI RGCGCY 1 cut(s) 2746
BfrI CTTAAG 1 cut(s) 2414
BfuI GTATCC 4 cut(s) 1775, 1780, 2618, 2759
BisI GCNGC 3 cut(s) 1106, 1409, 2645
BlpI GCTNAGC 2 cut(s) 1482, 2553
BlsI GCNGC 3 cut(s) 1107, 1410, 2646
Bme18I GGWCC 2 cut(s) 130, 1877
BmeT110I CYCGRG 4 cut(s) 147, 186, 2126, 2666
BmgT120I GGNCC 4 cut(s) 130, 150, 1877, 2720
BmiI GGNNCC 5 cut(s) 50, 1035, 1132, 1658, 2805
BmrI ACTGGG 1 cut(s) 2807
BmsI GCATC 7 cut(s) 90, 1177, 1435, 1752, 1789, 1930, 2349
BmuI ACTGGG 1 cut(s) 2807
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 4 cut(s) 86, 1304, 1305, 1635
Bpu1102I GCTNAGC 2 cut(s) 1482, 2553
BpuEI CTTGAG 2 cut(s) 66, 734
BpuMI CCSGG 8 cut(s) 148, 149, 166, 187, 188, 1169, 2667, 2668
Bsa29I ATCGAT 2 cut(s) 608, 689
BsaJI CCNNGG 9 cut(s) 52, 147, 186, 1513, 1652, 1953, 2454, 2666, 2799
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 970, 1874, 2690
Bse1I ACTGG 6 cut(s) 69, 1287, 1322, 1593, 1790, 2813
Bse3DI GCAATG 2 cut(s) 1197, 1204
BseBI CCWGG 4 cut(s) 1653, 2456, 2763, 2801
BseCI ATCGAT 2 cut(s) 608, 689
BseDI CCNNGG 9 cut(s) 52, 147, 186, 1513, 1652, 1953, 2454, 2666, 2799
BseGI GGATG 5 cut(s) 640, 670, 746, 1078, 1192
BseLI CCNNNNNNNGG 4 cut(s) 172, 970, 1874, 2690
BseMI GCAATG 2 cut(s) 1197, 1204
BseMII CTCAG 9 cut(s) 186, 1368, 1491, 1496, 1656, 1895, 1922, 2063, 2567
BseNI ACTGG 6 cut(s) 69, 1287, 1322, 1593, 1790, 2813
BseXI GCAGC 3 cut(s) 1117, 1420, 2631
BseYI CCCAGC 5 cut(s) 1738, 2203, 2776, 2782, 2788
BsgI GTGCAG 1 cut(s) 2361
BshFI GGCC 5 cut(s) 152, 1373, 1592, 2694, 2721
BshNI GGYRCC 1 cut(s) 1130
BshVI ATCGAT 2 cut(s) 608, 689
BsiHKCI CYCGRG 4 cut(s) 147, 186, 2126, 2666
BsiSI CCGG 5 cut(s) 148, 166, 187, 1169, 2667
BslFI GGGAC 1 cut(s) 1247
BslI CCNNNNNNNGG 4 cut(s) 172, 970, 1874, 2690
BsmAI GTCTC 4 cut(s) 62, 84, 1841, 2422
BsmBI CGTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 1247
BsmI GAATGC 1 cut(s) 1900
BsnI GGCC 5 cut(s) 152, 1373, 1592, 2694, 2721
BsoBI CYCGRG 4 cut(s) 147, 186, 2126, 2666
Bsp143I GATC 4 cut(s) 235, 856, 2317, 2331
Bsp1720I GCTNAGC 2 cut(s) 1482, 2553
BspACI CCGC 3 cut(s) 1868, 2491, 2582
BspANI GGCC 5 cut(s) 152, 1373, 1592, 2694, 2721
BspCNI CTCAG 9 cut(s) 187, 1369, 1492, 1495, 1657, 1894, 1923, 2062, 2566
BspDI ATCGAT 2 cut(s) 608, 689
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 5 cut(s) 50, 1035, 1132, 1658, 2805
BspPI GGATC 2 cut(s) 864, 2326
BspQI GCTCTTC 1 cut(s) 1820
BspT107I GGYRCC 1 cut(s) 1130
BspTI CTTAAG 1 cut(s) 2414
BsrDI GCAATG 2 cut(s) 1197, 1204
BsrI ACTGG 6 cut(s) 69, 1287, 1322, 1593, 1790, 2813
BssECI CCNNGG 9 cut(s) 52, 147, 186, 1513, 1652, 1953, 2454, 2666, 2799
BssMI GATC 4 cut(s) 235, 856, 2317, 2331
BssSI CACGAG 1 cut(s) 2707
BssT1I CCWWGG 3 cut(s) 52, 1513, 1953
Bst2BI CACGAG 1 cut(s) 2707
Bst2UI CCWGG 4 cut(s) 1653, 2456, 2763, 2801
Bst4CI ACNGT 6 cut(s) 114, 1600, 1633, 1912, 2625, 2840
Bst6I CTCTTC 5 cut(s) 488, 513, 818, 1820, 1852
BstAFI CTTAAG 1 cut(s) 2414
BstC8I GCNNGC 3 cut(s) 756, 1085, 1508
BstF5I GGATG 5 cut(s) 640, 670, 746, 1078, 1192
BstH2I RGCGCY 1 cut(s) 2746
BstHHI GCGC 1 cut(s) 2745
BstKTI GATC 4 cut(s) 238, 859, 2320, 2334
BstMAI GTCTC 4 cut(s) 62, 84, 1841, 2422
BstMBI GATC 4 cut(s) 235, 856, 2317, 2331
BstMWI GCNNNNNNNGC 2 cut(s) 92, 1478
BstNI CCWGG 4 cut(s) 1653, 2456, 2763, 2801
BstNSI RCATGY 3 cut(s) 1640, 1874, 2063
BstSFI CTRYAG 2 cut(s) 110, 2013
BstV1I GCAGC 3 cut(s) 1117, 1420, 2631
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 856
BstXI CCANNNNNNTGG 2 cut(s) 1345, 1514
BstYI RGATCY 1 cut(s) 856
Bsu15I ATCGAT 2 cut(s) 608, 689
BsuI GTATCC 4 cut(s) 1775, 1780, 2618, 2759
BsuRI GGCC 5 cut(s) 152, 1373, 1592, 2694, 2721
BsuTUI ATCGAT 2 cut(s) 608, 689
BtgZI GCGATG 2 cut(s) 2054, 2580
BtsCI GGATG 5 cut(s) 640, 670, 746, 1078, 1192
BtsI GCAGTG 2 cut(s) 753, 2334
BtsIMutI CAGTG 8 cut(s) 62, 119, 753, 1236, 1374, 1586, 2334, 2845
Cac8I GCNNGC 3 cut(s) 756, 1085, 1508
CaiI CAGNNNCTG 1 cut(s) 2795
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 2745
Cfr13I GGNCC 4 cut(s) 130, 150, 1877, 2720
Cfr9I CCCGGG 3 cut(s) 147, 186, 2666
ClaI ATCGAT 2 cut(s) 608, 689
Csp6I GTAC 4 cut(s) 1131, 1634, 2390, 2843
CviAII CATG 9 cut(s) 290, 1637, 1822, 1871, 2060, 2238, 2518, 2728, 2748
CviQI GTAC 4 cut(s) 1131, 1634, 2390, 2843
DpnI GATC 4 cut(s) 237, 858, 2319, 2333
DpnII GATC 4 cut(s) 235, 856, 2317, 2331
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 3 cut(s) 1371, 1590, 2692
Eam1104I CTCTTC 5 cut(s) 488, 513, 818, 1820, 1852
EarI CTCTTC 5 cut(s) 488, 513, 818, 1820, 1852
Eco130I CCWWGG 3 cut(s) 52, 1513, 1953
Eco32I GATATC 1 cut(s) 2274
Eco47I GGWCC 2 cut(s) 130, 1877
Eco57I CTGAAG 3 cut(s) 200, 1080, 1130
Eco88I CYCGRG 4 cut(s) 147, 186, 2126, 2666
EcoRI GAATTC 2 cut(s) 2366, 2661
EcoRII CCWGG 4 cut(s) 1651, 2454, 2761, 2799
EcoRV GATATC 1 cut(s) 2274
EcoT14I CCWWGG 3 cut(s) 52, 1513, 1953
EcoT22I ATGCAT 2 cut(s) 2342, 2826
ErhI CCWWGG 3 cut(s) 52, 1513, 1953
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 9 cut(s) 293, 1640, 1825, 1874, 2063, 2241, 2521, 2731, 2751
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 1 cut(s) 1247
FatI CATG 9 cut(s) 289, 1636, 1821, 1870, 2059, 2237, 2517, 2727, 2747
FauNDI CATATG 1 cut(s) 1990
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 3 cut(s) 1106, 1409, 2645
FokI GGATG 5 cut(s) 647, 677, 753, 1085, 1199
Fsp4HI GCNGC 3 cut(s) 1106, 1409, 2645
FspBI CTAG 6 cut(s) 734, 1178, 1260, 2066, 2150, 2577
GlaI GCGC 1 cut(s) 2744
GluI GCNGC 3 cut(s) 1106, 1409, 2645
GsaI CCCAGC 5 cut(s) 1742, 2207, 2780, 2786, 2792
GsuI CTGGAG 4 cut(s) 86, 1304, 1305, 1635
HaeII RGCGCY 1 cut(s) 2746
HaeIII GGCC 5 cut(s) 152, 1373, 1592, 2694, 2721
HapII CCGG 5 cut(s) 148, 166, 187, 1169, 2667
HhaI GCGC 1 cut(s) 2745
Hin1II CATG 9 cut(s) 293, 1640, 1825, 1874, 2063, 2241, 2521, 2731, 2751
Hin6I GCGC 1 cut(s) 2743
HinP1I GCGC 1 cut(s) 2743
HincII GTYRAC 3 cut(s) 144, 1431, 1908
HindII GTYRAC 3 cut(s) 144, 1431, 1908
HindIII AAGCTT 2 cut(s) 84, 2030
HpaI GTTAAC 1 cut(s) 1908
HpaII CCGG 5 cut(s) 148, 166, 187, 1169, 2667
HphI GGTGA 9 cut(s) 214, 328, 358, 379, 391, 547, 586, 1716, 2852
Hpy166II GTNNAC 6 cut(s) 144, 1431, 1724, 1908, 2843, 2880
Hpy188III TCNNGA 8 cut(s) 160, 290, 820, 860, 1715, 2066, 2126, 2357
Hpy8I GTNNAC 6 cut(s) 144, 1431, 1724, 1908, 2843, 2880
HpyCH4III ACNGT 6 cut(s) 114, 1600, 1633, 1912, 2625, 2840
HpyCH4IV ACGT 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 1478
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 9 cut(s) 293, 1640, 1825, 1874, 2063, 2241, 2521, 2731, 2751
HspAI GCGC 1 cut(s) 2743
KpnI GGTACC 1 cut(s) 1134
Ksp22I TGATCA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 1908
Kzo9I GATC 4 cut(s) 235, 856, 2317, 2331
LguI GCTCTTC 1 cut(s) 1820
LmnI GCTCC 6 cut(s) 48, 175, 1033, 1288, 2797, 2809
Lsp1109I GCAGC 3 cut(s) 1117, 1420, 2631
LweI GCATC 7 cut(s) 90, 1177, 1435, 1752, 1789, 1930, 2349
MaeI CTAG 6 cut(s) 734, 1178, 1260, 2066, 2150, 2577
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 4 cut(s) 1063, 1414, 1600, 2625
MalI GATC 4 cut(s) 237, 858, 2319, 2333
MboI GATC 4 cut(s) 235, 856, 2317, 2331
MflI RGATCY 1 cut(s) 856
MlsI TGGCCA 3 cut(s) 1373, 1592, 2694
MluNI TGGCCA 3 cut(s) 1373, 1592, 2694
MlyI GAGTC 5 cut(s) 38, 149, 835, 1869, 2424
Mox20I TGGCCA 3 cut(s) 1373, 1592, 2694
Mph1103I ATGCAT 2 cut(s) 2342, 2826
MroXI GAANNNNTTC 2 cut(s) 1829, 2876
MscI TGGCCA 3 cut(s) 1373, 1592, 2694
MslI CAYNNNNRTG 2 cut(s) 2058, 2223
Msp20I TGGCCA 3 cut(s) 1373, 1592, 2694
MspA1I CMGCKG 3 cut(s) 1108, 1145, 2557
MspCI CTTAAG 1 cut(s) 2414
MspI CCGG 5 cut(s) 148, 166, 187, 1169, 2667
Mva1269I GAATGC 1 cut(s) 1900
MvaI CCWGG 4 cut(s) 1653, 2456, 2763, 2801
MwoI GCNNNNNNNGC 2 cut(s) 92, 1478
NciI CCSGG 8 cut(s) 148, 149, 166, 187, 188, 1169, 2667, 2668
NdeI CATATG 1 cut(s) 1990
NdeII GATC 4 cut(s) 235, 856, 2317, 2331
NlaIII CATG 9 cut(s) 293, 1640, 1825, 1874, 2063, 2241, 2521, 2731, 2751
NlaIV GGNNCC 5 cut(s) 50, 1035, 1132, 1658, 2805
NmeAIII GCCGAG 1 cut(s) 2414
NmuCI GTSAC 1 cut(s) 2625
NsiI ATGCAT 2 cut(s) 2342, 2826
NspI RCATGY 3 cut(s) 1640, 1874, 2063
PaeR7I CTCGAG 1 cut(s) 2126
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 1820
PctI GAATGC 1 cut(s) 1900
PdmI GAANNNNTTC 2 cut(s) 1829, 2876
PfeI GAWTC 9 cut(s) 35, 905, 949, 1055, 1580, 2234, 2242, 2360, 2758
PfoI TCCNGGA 1 cut(s) 2761
PkrI GCNGC 3 cut(s) 1107, 1410, 2646
PleI GAGTC 5 cut(s) 37, 148, 834, 1868, 2424
PpsI GAGTC 5 cut(s) 37, 148, 834, 1868, 2424
PshBI ATTAAT 1 cut(s) 2168
Psp6I CCWGG 4 cut(s) 1651, 2454, 2761, 2799
PspFI CCCAGC 5 cut(s) 1738, 2203, 2776, 2782, 2788
PspGI CCWGG 4 cut(s) 1651, 2454, 2761, 2799
PspN4I GGNNCC 5 cut(s) 50, 1035, 1132, 1658, 2805
PspPI GGNCC 4 cut(s) 130, 150, 1877, 2720
PstNI CAGNNNCTG 1 cut(s) 2795
PsuI RGATCY 1 cut(s) 856
PvuII CAGCTG 3 cut(s) 1108, 1145, 2557
RsaI GTAC 4 cut(s) 1132, 1635, 2391, 2844
RsaNI GTAC 4 cut(s) 1131, 1634, 2390, 2843
RseI CAYNNNNRTG 2 cut(s) 2058, 2223
SalI GTCGAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 1820
SatI GCNGC 3 cut(s) 1106, 1409, 2645
Sau3AI GATC 4 cut(s) 235, 856, 2317, 2331
Sau96I GGNCC 4 cut(s) 130, 150, 1877, 2720
SchI GAGTC 5 cut(s) 38, 149, 835, 1869, 2424
SfaNI GCATC 7 cut(s) 90, 1177, 1435, 1752, 1789, 1930, 2349
SfcI CTRYAG 2 cut(s) 110, 2013
Sfr274I CTCGAG 1 cut(s) 2126
SinI GGWCC 2 cut(s) 130, 1877
SlaI CTCGAG 1 cut(s) 2126
SmaI CCCGGG 3 cut(s) 149, 188, 2668
SmiMI CAYNNNNRTG 2 cut(s) 2058, 2223
SmlI CTYRAG 4 cut(s) 81, 713, 2126, 2414
SmoI CTYRAG 4 cut(s) 81, 713, 2126, 2414
SpeI ACTAGT 2 cut(s) 1177, 2149
SsiI CCGC 3 cut(s) 1868, 2491, 2582
SspMI CTAG 6 cut(s) 734, 1178, 1260, 2066, 2150, 2577
StyI CCWWGG 3 cut(s) 52, 1513, 1953
TaaI ACNGT 6 cut(s) 114, 1600, 1633, 1912, 2625, 2840
TaiI ACGT 1 cut(s) 74
TatI WGTACW 1 cut(s) 2389
TfiI GAWTC 9 cut(s) 35, 905, 949, 1055, 1580, 2234, 2242, 2360, 2758
TscAI CASTG 8 cut(s) 69, 119, 753, 1243, 1381, 1593, 2334, 2845
TseFI GTSAC 1 cut(s) 2625
TseI GCWGC 3 cut(s) 1105, 1408, 2644
Tsp45I GTSAC 1 cut(s) 2625
TspGWI ACGGA 1 cut(s) 1916
TspMI CCCGGG 3 cut(s) 147, 186, 2666
TspRI CASTG 8 cut(s) 69, 119, 753, 1243, 1381, 1593, 2334, 2845
Vha464I CTTAAG 1 cut(s) 2414
VpaK11BI GGWCC 2 cut(s) 130, 1877
VspI ATTAAT 1 cut(s) 2168
XapI RAATTY 8 cut(s) 383, 524, 1612, 1701, 1729, 2195, 2366, 2661
XbaI TCTAGA 1 cut(s) 2065
XceI RCATGY 3 cut(s) 1640, 1874, 2063
XcmI CCANNNNNNNNNTGG 1 cut(s) 1871
XhoI CTCGAG 1 cut(s) 2126
XmaI CCCGGG 3 cut(s) 147, 186, 2666
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 1829, 2876
XspI CTAG 6 cut(s) 734, 1178, 1260, 2066, 2150, 2577
Zsp2I ATGCAT 2 cut(s) 2342, 2826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.