Rh3BG050200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000126
Physical Location & Seq
Forward (+)
3360337 .. 3423682
63346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG050200.1

Sequence Viewer

Length: 2586 bp
ATGGACTCTATGAGAAAAGCGTGGAAGTACCTCGAGGAGCAGTTTGACACAAACTTGAATGAGTTACAGACCAGACTCCAAGAGCTTCAGATCCACGAGGAGGAAATTAGTAACAAAGAAAAGCGATTGGAAGACAGAGAGTCCGAGTTGGAACGTCTTGATAAGCTGATTGAATATAAGGGAGAGGAATATGATGCAATGGAGGAGGCAATAACAGAGAAGCAGTTACAGCTTGAACAAGTGAAAACCGAGTTGCAATCCATTAGTTTATTGGTTGAAGAAAAAAGCCAAGAGCTTGATAGTAAAGAGAAGCGGGTTTTGGAGGTTGAGGAGTTGCTTAGGAAAAAGGATAAGGAGTGTGCTTTGATGCAAAACCGTATTGAAGAGGGAAGGAATAATTTGATTAGGGTTGAGAAAAGTATTAGGGAAATGGATATCAAAGTGAAGACTTCTATGGAGGATTGGTCTGGTAAGGTTGATTTAAAAGAGAGGCAAATTGAAGGACTGCTCAAGCCAAATGTGGAACAACTTCTTCTTGCTTATAACATGATCAAAGAACACTTCAATGAAGTTGAAAGGAAAGAGAGGGGACTGAAACAACAGGCCAAAGACCTTGAATCAAAAGAGAGAGAAGTTGCTTTGAAAGCTGATGAACTTAAGCTGATTGAAACAAGGGTTAAAAAACGCCTCAATAAGGTTCAGTTGAAAGAAAAGCATTTTGATTCACTGGAAAAGTCATTAAAAGCAGACGAACAGCATTTGGGTTCACTCCTAAAGTCCACAGAAGAGTGCAAAAAGGATTTGGCTTCAATATCCCATCAACTTCAGATGAAAGAAAGGGAGCTTGCACAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTGATTCTCAAAGGAAGGCTAAGCATTTGGAGCCTACCCCTGCTGCTAAAAATGCTAGTGTTGTTTCATCTACAAGTGATCAATCCTGGATCAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCGAATGTCAGCTGTTCTACAAGCATCATCAGACTCGGCAAAATTGGTTTTGGATGCAATGCAAGGGTTTTATCGGTCAAATCTTACTGTGGAAAACAGAGAGTTTGATTCACATTTGAGGGTCGTAAGAAAGAGTTGTATTCTTTTGCTACAGGAGTTAAAGAGAATGTCACCACTAATTAATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGCTGATTGGAAAGAGAAGATGGCAGTTACCGCTGATAATAGTTGGGAGGCTTTGGGCTTTTTGCGGCTTATCACTACGTATGAATTGACAAGTATTTATGATTTGAGGGAGCTTCGAAGTGTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCACAGATAAGGCACCTGGGACGAATGTTGTTTCTTCCATTGTCAAGACTGAGCGATCAGAATCTTCGCTGGCTAGAAATGAAGCAACTCTTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGAGGGACCCAAATCTTTTGGGGCTGGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGAATCTTCTCTCGCTAGAAATGTAGCAACTCTATATTCACCGAATAATGCTTTACAGAAAAATCTGTTGGTCACTCTTAAATCATCATCAGACCCTGCAAAACTTGTGTTGGATTCGATGCAAGGGTCTTTGACGTATTACTGGAGAAATGGAGATGTTAGTTCCAAAGAAAAGGTTGTATCTGGTAATATTACTCTATTGAAGATTCTAATGGGACTATCAACACACGTTGGACCTCATCTGAAAGAAAATGCAACAAATCTAGCATTCCAGTGGAAAGAAAAGTTGAGAGCTGATACTGAAGATTCATCGGAGAGTTTGGGATATTTGCTGTTTATAGCTATGTATGGATTGCTTGGAACCTTACGTGAAGATGAGATTGTAATGCTTCTTAGAAGGGTTTCACAGCATAAGCGGTCTCTGGAGTTATGTCAGACACACGGTTTTGCAAATTATATCCCTGATTTTATACAGAAGCTTATTGAAAGGAAGCTACTGATGGTGGCTGTTAGATCTATTTGTGCCTTGAAATTATTTGACAAGCTCCCCCCAGTGCCACTCTTAAAAGAACATGTGGATGATGTAATGATGTGTTCCGAAGTAATTTGCAGGTCACAGATGATACCTGATGAAAAGGATAAGGCTCTGGATGGTAAAATAGCTGATCTCAGAGCTGCCATTCAATGCATCAAAGATTACAACCTCGAGTCTGAATACCCGTCCAAGACTATTGAATTGCAAATAGTTCAGCTTGATGAAATGCGCAAGGAAAAATGGAGAAGTTTGGAACCATCTCTGGTACCCAAAATTGAACAAGAAGAGAGAAAAAGGAAGAAGCCTTGTACCAGCTTTTCTGCCCCAAAGTTACAACCAGGAAAGGTGCCGAAAATAAAATTCGTCTTCAGTGGTTCGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

861

Amino Acids

98.41

Weight (kDa)

6.72

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 322 - 497 3.2e-33 Frigida-like protein
Frigida PF07899 563 - 816 3.6e-49 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AbsI CCTCGAGG 1 cut(s) 32
Acc16I TGCGCA 1 cut(s) 2429
Acc36I ACCTGC 1 cut(s) 2265
Acc65I GGTACC 1 cut(s) 2464
AccB1I GGYRCC 3 cut(s) 1453, 2464, 2545
AciI CCGC 4 cut(s) 313, 1293, 1327, 2080
AclWI GGATC 2 cut(s) 85, 983
AcsI RAATTY 1 cut(s) 2558
AcuI CTGAAG 4 cut(s) 71, 809, 1986, 2551
AfaI GTAC 3 cut(s) 29, 2466, 2509
AfiI CCNNNNNNNGG 2 cut(s) 100, 694
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 2 cut(s) 1891, 2236
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 3 cut(s) 971, 1456, 2536
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 1715, 1747
Alw26I GTCTC 2 cut(s) 2088, 2572
AlwI GGATC 2 cut(s) 85, 983
AlwNI CAGNNNCTG 1 cut(s) 1760
Ama87I CYCGRG 2 cut(s) 32, 2369
AoxI GGCC 2 cut(s) 603, 855
ApeKI GCWGC 5 cut(s) 929, 1262, 1415, 1628, 2339
ApoI RAATTY 1 cut(s) 2558
AseI ATTAAT 1 cut(s) 1227
Asp700I GAANNNNTTC 2 cut(s) 528, 2065
Asp718I GGTACC 1 cut(s) 2464
AspLEI GCGC 1 cut(s) 2430
AspS9I GGNCC 3 cut(s) 1601, 1661, 1898
AsuHPI GGTGA 4 cut(s) 1209, 1249, 1635, 1695
AsuII TTCGAA 1 cut(s) 1378
AvaI CYCGRG 2 cut(s) 32, 2369
AvaII GGWCC 3 cut(s) 1601, 1661, 1898
AxyI CCTNAGG 1 cut(s) 1233
BaeGI GKGCMC 1 cut(s) 1435
BanI GGYRCC 3 cut(s) 1453, 2464, 2545
BauI CACGAG 1 cut(s) 95
BbsI GAAGAC 3 cut(s) 138, 452, 2557
BbvCI CCTCAGC 1 cut(s) 1656
BbvI GCAGC 5 cut(s) 916, 1274, 1402, 1640, 2326
BccI CCATC 6 cut(s) 825, 980, 1276, 2158, 2309, 2464
BciT130I CCWGG 3 cut(s) 973, 1458, 2538
BclI TGATCA 2 cut(s) 549, 964
BcoDI GTCTC 2 cut(s) 2088, 2572
BfaI CTAG 4 cut(s) 942, 1515, 1680, 1928
BfmI CTRYAG 1 cut(s) 1196
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 2265
BglII AGATCT 1 cut(s) 2177
BisI GCNGC 6 cut(s) 930, 1263, 1328, 1416, 1629, 2340
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 6 cut(s) 931, 1264, 1329, 1417, 1630, 2341
Bme1390I CCNGG 3 cut(s) 973, 1458, 2538
Bme18I GGWCC 3 cut(s) 1601, 1661, 1898
BmeRI GACNNNNNGTC 1 cut(s) 139
BmeT110I CYCGRG 2 cut(s) 32, 2369
BmgT120I GGNCC 3 cut(s) 1601, 1661, 1898
BmiI GGNNCC 9 cut(s) 918, 1455, 1602, 1603, 1662, 2026, 2454, 2466, 2547
BmrFI CCNGG 3 cut(s) 973, 1458, 2538
BmrI ACTGGG 1 cut(s) 2210
BmsI GCATC 6 cut(s) 184, 357, 1079, 1090, 1773, 2361
BmuI ACTGGG 1 cut(s) 2210
BpiI GAAGAC 3 cut(s) 138, 452, 2557
BpmI CTGGAG 2 cut(s) 1828, 2108
Bpu10I CCTNAGC 2 cut(s) 338, 1656
Bpu1102I GCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 1378
BpuEI CTTGAG 1 cut(s) 494
BsaAI YACGTR 2 cut(s) 1341, 2033
BsaBI GATNNNNATC 1 cut(s) 1501
BsaI GGTCTC 2 cut(s) 2088, 2572
BsaJI CCNNGG 1 cut(s) 1457
BsaXI ACNNNNNCTCC 4 cut(s) 449, 479, 1519, 1549
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 694
Bse1I ACTGG 4 cut(s) 732, 1811, 1936, 2216
Bse21I CCTNAGG 1 cut(s) 1233
Bse3DI GCAATG 3 cut(s) 204, 1110, 1584
Bse8I GATNNNNATC 1 cut(s) 1501
BseBI CCWGG 3 cut(s) 973, 1458, 2538
BseDI CCNNGG 1 cut(s) 1457
BseGI GGATG 4 cut(s) 991, 1105, 2248, 2320
BseJI GATNNNNATC 1 cut(s) 1501
BseLI CCNNNNNNNGG 2 cut(s) 100, 694
BseMI GCAATG 3 cut(s) 204, 1110, 1584
BseMII CTCAG 6 cut(s) 1247, 1415, 1482, 1587, 1647, 2347
BseNI ACTGG 4 cut(s) 732, 1811, 1936, 2216
BseRI GAGGAG 5 cut(s) 50, 113, 218, 344, 1527
BseSI GKGCMC 1 cut(s) 1435
BseXI GCAGC 5 cut(s) 916, 1274, 1402, 1640, 2326
BshFI GGCC 2 cut(s) 605, 857
BshNI GGYRCC 3 cut(s) 1453, 2464, 2545
BsiHKCI CYCGRG 2 cut(s) 32, 2369
BslFI GGGAC 5 cut(s) 603, 1474, 1614, 1674, 1893
BslI CCNNNNNNNGG 2 cut(s) 100, 694
BsmAI GTCTC 2 cut(s) 2088, 2572
BsmFI GGGAC 5 cut(s) 603, 1474, 1614, 1674, 1893
BsmI GAATGC 1 cut(s) 1931
BsnI GGCC 2 cut(s) 605, 857
Bso31I GGTCTC 2 cut(s) 2088, 2572
BsoBI CYCGRG 2 cut(s) 32, 2369
Bsp119I TTCGAA 1 cut(s) 1378
Bsp1286I GDGCHC 1 cut(s) 1435
Bsp143I GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
Bsp1720I GCTNAGC 1 cut(s) 906
BspACI CCGC 4 cut(s) 313, 1293, 1327, 2080
BspANI GGCC 2 cut(s) 605, 857
BspCNI CTCAG 6 cut(s) 1246, 1414, 1483, 1588, 1648, 2346
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 9 cut(s) 918, 1455, 1602, 1603, 1662, 2026, 2454, 2466, 2547
BspMI ACCTGC 1 cut(s) 2265
BspPI GGATC 2 cut(s) 85, 983
BspT104I TTCGAA 1 cut(s) 1378
BspT107I GGYRCC 3 cut(s) 1453, 2464, 2545
BspTI CTTAAG 1 cut(s) 656
BspTNI GGTCTC 2 cut(s) 2088, 2572
BsrDI GCAATG 3 cut(s) 204, 1110, 1584
BsrI ACTGG 4 cut(s) 732, 1811, 1936, 2216
BssECI CCNNGG 1 cut(s) 1457
BssMI GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst2UI CCWGG 3 cut(s) 973, 1458, 2538
Bst4CI ACNGT 4 cut(s) 377, 1002, 1135, 2108
Bst6I CTCTTC 4 cut(s) 378, 780, 1581, 2478
BstAFI CTTAAG 1 cut(s) 656
BstBAI YACGTR 2 cut(s) 1341, 2033
BstBI TTCGAA 1 cut(s) 1378
BstC8I GCNNGC 3 cut(s) 846, 855, 1512
BstDEI CTNAG 9 cut(s) 338, 906, 1233, 1401, 1491, 1596, 1656, 2057, 2333
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 4 cut(s) 991, 1105, 2248, 2320
BstHHI GCGC 1 cut(s) 2430
BstKTI GATC 7 cut(s) 93, 552, 967, 978, 1499, 2180, 2332
BstMAI GTCTC 2 cut(s) 2088, 2572
BstMBI GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
BstMWI GCNNNNNNNGC 8 cut(s) 229, 644, 850, 854, 916, 938, 1292, 1625
BstNI CCWGG 3 cut(s) 973, 1458, 2538
BstNSI RCATGY 1 cut(s) 2240
BstSCI CCNGG 3 cut(s) 971, 1456, 2536
BstSFI CTRYAG 1 cut(s) 1196
BstSLI GKGCMC 1 cut(s) 1435
BstSNI TACGTA 1 cut(s) 1341
BstV1I GCAGC 5 cut(s) 916, 1274, 1402, 1640, 2326
BstV2I GAAGAC 3 cut(s) 138, 452, 2557
BstX2I RGATCY 2 cut(s) 90, 2177
BstYI RGATCY 2 cut(s) 90, 2177
Bsu36I CCTNAGG 1 cut(s) 1233
BsuRI GGCC 2 cut(s) 605, 857
BtsCI GGATG 4 cut(s) 991, 1105, 2248, 2320
BtsI GCAGTG 1 cut(s) 1257
BtsIMutI CAGTG 5 cut(s) 725, 1257, 1943, 2223, 2575
BveI ACCTGC 1 cut(s) 2265
Cac8I GCNNGC 3 cut(s) 846, 855, 1512
CaiI CAGNNNCTG 1 cut(s) 1760
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 2430
Cfr13I GGNCC 3 cut(s) 1601, 1661, 1898
Csp6I GTAC 3 cut(s) 28, 2465, 2508
CviAII CATG 4 cut(s) 547, 982, 1009, 2237
CviQI GTAC 3 cut(s) 28, 2465, 2508
DdeI CTNAG 9 cut(s) 338, 906, 1233, 1401, 1491, 1596, 1656, 2057, 2333
DpnI GATC 7 cut(s) 92, 551, 966, 977, 1498, 2179, 2331
DpnII GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
DraI TTTAAA 1 cut(s) 483
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 4 cut(s) 378, 780, 1581, 2478
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 4 cut(s) 378, 780, 1581, 2478
Eco105I TACGTA 1 cut(s) 1341
Eco31I GGTCTC 2 cut(s) 2088, 2572
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 3 cut(s) 1601, 1661, 1898
Eco57I CTGAAG 4 cut(s) 71, 809, 1986, 2551
Eco81I CCTNAGG 1 cut(s) 1233
Eco88I CYCGRG 2 cut(s) 32, 2369
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 1601
EcoRII CCWGG 3 cut(s) 971, 1456, 2536
EcoRV GATATC 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 2354
FaeI CATG 4 cut(s) 550, 985, 1012, 2240
FalI AAGNNNNNCTT 2 cut(s) 1515, 1547
FaqI GGGAC 5 cut(s) 603, 1474, 1614, 1674, 1893
FatI CATG 4 cut(s) 546, 981, 1008, 2236
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 2 cut(s) 549, 964
Fnu4HI GCNGC 6 cut(s) 930, 1263, 1328, 1416, 1629, 2340
FokI GGATG 4 cut(s) 998, 1112, 2255, 2327
Fsp4HI GCNGC 6 cut(s) 930, 1263, 1328, 1416, 1629, 2340
FspBI CTAG 4 cut(s) 942, 1515, 1680, 1928
FspI TGCGCA 1 cut(s) 2429
GlaI GCGC 1 cut(s) 2429
GluI GCNGC 6 cut(s) 930, 1263, 1328, 1416, 1629, 2340
GsuI CTGGAG 2 cut(s) 1828, 2108
HaeIII GGCC 2 cut(s) 605, 857
HhaI GCGC 1 cut(s) 2430
Hin1II CATG 4 cut(s) 550, 985, 1012, 2240
Hin6I GCGC 1 cut(s) 2428
HinP1I GCGC 1 cut(s) 2428
HindIII AAGCTT 2 cut(s) 994, 2141
HphI GGTGA 4 cut(s) 1209, 1249, 1635, 1695
Hpy166II GTNNAC 2 cut(s) 767, 780
Hpy188III TCNNGA 6 cut(s) 158, 1009, 1486, 2087, 2312, 2577
Hpy8I GTNNAC 2 cut(s) 767, 780
HpyAV CCTTC 5 cut(s) 384, 494, 895, 1590, 2055
HpyCH4III ACNGT 4 cut(s) 377, 1002, 1135, 2108
HpyCH4IV ACGT 5 cut(s) 154, 1340, 1799, 1893, 2032
HpyF10VI GCNNNNNNNGC 8 cut(s) 229, 644, 850, 854, 916, 938, 1292, 1625
HpyF3I CTNAG 9 cut(s) 338, 906, 1233, 1401, 1491, 1596, 1656, 2057, 2333
HpySE526I ACGT 5 cut(s) 154, 1340, 1799, 1893, 2032
Hsp92II CATG 4 cut(s) 550, 985, 1012, 2240
HspAI GCGC 1 cut(s) 2428
KflI GGGWCCC 1 cut(s) 1601
KpnI GGTACC 1 cut(s) 2468
Ksp22I TGATCA 2 cut(s) 549, 964
Kzo9I GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
LmnI GCTCC 5 cut(s) 37, 841, 916, 1372, 2214
Lsp1109I GCAGC 5 cut(s) 916, 1274, 1402, 1640, 2326
LweI GCATC 6 cut(s) 184, 357, 1079, 1090, 1773, 2361
MaeI CTAG 4 cut(s) 942, 1515, 1680, 1928
MaeII ACGT 5 cut(s) 154, 1340, 1799, 1893, 2032
MaeIII GTNAC 8 cut(s) 63, 110, 225, 1215, 1288, 1735, 2277, 2529
MalI GATC 7 cut(s) 92, 551, 966, 977, 1498, 2179, 2331
MboI GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
MflI RGATCY 2 cut(s) 90, 2177
MhlI GDGCHC 1 cut(s) 1435
MlyI GAGTC 4 cut(s) 69, 149, 1073, 2381
MmeI TCCRAC 3 cut(s) 129, 1755, 1876
Mph1103I ATGCAT 1 cut(s) 2354
MroXI GAANNNNTTC 2 cut(s) 528, 2065
MslI CAYNNNNRTG 3 cut(s) 564, 1936, 2241
MspA1I CMGCKG 3 cut(s) 1058, 1265, 1295
MspCI CTTAAG 1 cut(s) 656
MspR9I CCNGG 3 cut(s) 973, 1458, 2538
Mva1269I GAATGC 1 cut(s) 1931
MvaI CCWGG 3 cut(s) 973, 1458, 2538
MwoI GCNNNNNNNGC 8 cut(s) 229, 644, 850, 854, 916, 938, 1292, 1625
NdeII GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
NlaIII CATG 4 cut(s) 550, 985, 1012, 2240
NlaIV GGNNCC 9 cut(s) 918, 1455, 1602, 1603, 1662, 2026, 2454, 2466, 2547
NmeAIII GCCGAG 1 cut(s) 1061
NmuCI GTSAC 3 cut(s) 1215, 1735, 2277
NsbI TGCGCA 1 cut(s) 2429
NsiI ATGCAT 1 cut(s) 2354
NspI RCATGY 1 cut(s) 2240
NspV TTCGAA 1 cut(s) 1378
PaeR7I CTCGAG 2 cut(s) 32, 2369
PagI TCATGA 1 cut(s) 1008
PciI ACATGT 1 cut(s) 2236
PctI GAATGC 1 cut(s) 1931
PdmI GAANNNNTTC 2 cut(s) 528, 2065
PfeI GAWTC 9 cut(s) 617, 722, 890, 1154, 1502, 1667, 1778, 1870, 1970
PfoI TCCNGGA 1 cut(s) 971
PkrI GCNGC 6 cut(s) 931, 1264, 1329, 1417, 1630, 2341
PleI GAGTC 4 cut(s) 69, 148, 1073, 2380
PpsI GAGTC 4 cut(s) 69, 148, 1073, 2380
Ppu21I YACGTR 2 cut(s) 1341, 2033
PpuMI RGGWCCY 1 cut(s) 1601
PscI ACATGT 1 cut(s) 2236
PshBI ATTAAT 1 cut(s) 1227
PsiI TTATAA 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 1601
Psp6I CCWGG 3 cut(s) 971, 1456, 2536
PspGI CCWGG 3 cut(s) 971, 1456, 2536
PspN4I GGNNCC 9 cut(s) 918, 1455, 1602, 1603, 1662, 2026, 2454, 2466, 2547
PspPI GGNCC 3 cut(s) 1601, 1661, 1898
PspPPI RGGWCCY 1 cut(s) 1601
PspXI VCTCGAGB 2 cut(s) 32, 2369
PstNI CAGNNNCTG 1 cut(s) 1760
PsuI RGATCY 2 cut(s) 90, 2177
PvuII CAGCTG 2 cut(s) 1058, 1265
RsaI GTAC 3 cut(s) 29, 2466, 2509
RsaNI GTAC 3 cut(s) 28, 2465, 2508
RseI CAYNNNNRTG 3 cut(s) 564, 1936, 2241
SatI GCNGC 6 cut(s) 930, 1263, 1328, 1416, 1629, 2340
Sau3AI GATC 7 cut(s) 90, 549, 964, 975, 1496, 2177, 2329
Sau96I GGNCC 3 cut(s) 1601, 1661, 1898
SchI GAGTC 4 cut(s) 69, 149, 1073, 2381
ScrFI CCNGG 3 cut(s) 973, 1458, 2538
SduI GDGCHC 1 cut(s) 1435
SfaNI GCATC 6 cut(s) 184, 357, 1079, 1090, 1773, 2361
SfcI CTRYAG 1 cut(s) 1196
Sfr274I CTCGAG 2 cut(s) 32, 2369
SfuI TTCGAA 1 cut(s) 1378
SinI GGWCC 3 cut(s) 1601, 1661, 1898
SlaI CTCGAG 2 cut(s) 32, 2369
SmiMI CAYNNNNRTG 3 cut(s) 564, 1936, 2241
SmlI CTYRAG 4 cut(s) 32, 509, 656, 2369
SmoI CTYRAG 4 cut(s) 32, 509, 656, 2369
SnaBI TACGTA 1 cut(s) 1341
SsiI CCGC 4 cut(s) 313, 1293, 1327, 2080
SspI AATATT 2 cut(s) 1550, 1855
SspMI CTAG 4 cut(s) 942, 1515, 1680, 1928
StyD4I CCNGG 3 cut(s) 971, 1456, 2536
TaaI ACNGT 4 cut(s) 377, 1002, 1135, 2108
TaiI ACGT 5 cut(s) 157, 1343, 1802, 1896, 2035
TaqI TCGA 5 cut(s) 33, 1378, 1781, 2370, 2576
TaqII GACCGA 1 cut(s) 1110
TauI GCSGC 1 cut(s) 1330
TfiI GAWTC 9 cut(s) 617, 722, 890, 1154, 1502, 1667, 1778, 1870, 1970
TscAI CASTG 5 cut(s) 732, 1257, 1943, 2223, 2575
TseFI GTSAC 3 cut(s) 1215, 1735, 2277
TseI GCWGC 5 cut(s) 929, 1262, 1415, 1628, 2339
Tsp45I GTSAC 3 cut(s) 1215, 1735, 2277
TspRI CASTG 5 cut(s) 732, 1257, 1943, 2223, 2575
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 3 cut(s) 1601, 1661, 1898
VspI ATTAAT 1 cut(s) 1227
XagI CCTNNNNNAGG 1 cut(s) 692
XapI RAATTY 1 cut(s) 2558
XceI RCATGY 1 cut(s) 2240
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XhoI CTCGAG 2 cut(s) 32, 2369
XmnI GAANNNNTTC 2 cut(s) 528, 2065
XspI CTAG 4 cut(s) 942, 1515, 1680, 1928
Zsp2I ATGCAT 1 cut(s) 2354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.