FvH4_7g18700

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000126
Physical Location & Seq
Forward (+)
15534917 .. 15537658
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18700.t1

Sequence Viewer

Length: 1101 bp
AAGAAGATTGAAAATCACTTCAACTCAACCCGGAATTCGTTTAAGGCCCGGGAGGAGGAAATCGGGCTTCGAGAGAAGCAGTTGGAAGAGAAAGAGTCTTATTTTGAGTCTCTGAGGGAATTTAAGGAGGAGGAGTTGAATGCAATTGAGGAGGTAATTACAGAGAAGCTAATACAAGTTGAACTAGTTAAGACTGAGTTGCAGTGTGTTAGTTTATTGGTTGAAGAGAAGAGGCAGAAGCTTGATAGTACAGAGAAGCGGTTTTTGAAAGTTGAGGAGTTGGTTAGAGAAAAGGAGAGGGAGTGTGATTTGATCCAAAACCGTATTGAAGAGGGGACATCGAATTTGAGGAGGATTGAGAAATTCATTGGGGATAATTTGAGAGGTGATGGTGAACTTAAGAGGAAAATGAGGAAACGTTATCAACAGGCCAAAGACCTTGAATTGAACCAGGCACAGTTTGATTTTCAATCAAACACGGAGCAATCAGAACATGCCCCTGGGGCTAACAACAAGGCAATTCCTTTATGTGGTAATAATGTGACCAACATCATTTCTTCCCTTGCCAAAACGGAAAAACTAGAATCATCTCTGGCTACAAATTCAACTACTTTTCTTTCTTCCAATGTTCAACCATATGCCACCAGCTATCAAAGGAATGTGCCAGGGTTTCTAGAGGATAATATGGGTGAGAATGATTCCACAGACAATGAATTGGCTGCTTCTCTTCGGTTGGTACCAGACCCAGCTAAACTAGTGTTGAACTACATGCAAAAGTTTTTTGCTCGGTCCTTGAGAAATGGACGTTTTGAAGAAAGAATCATGTTACCGAGTAACATTTCCGTATTGAAGGAGCTATTGATTGTTTCGCCGCATGTCGGATTGCATCTGAAAGAAGATTCGACAACTTTAGTAGCCCAGTGGAAAGAAAAGATGAGAGGAAATACTGTAAAAACAGATGAAAGTTTAGTATTTTTGATGTTTATCGCTATGTATGGATTGGTTTCTATGTTAAATGTAGATGAGATTGTAACGCTTCTTGGGTTGATTTCTCAGAGTAAAAGGGCTCTAGAATTGTGTCATGCATGGTTTTGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

367

Amino Acids

42.15

Weight (kDa)

5.59

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 224 - 362 5.1e-20 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 736
AccB1I GGYRCC 1 cut(s) 736
AciI CCGC 2 cut(s) 259, 872
AclI AACGTT 1 cut(s) 418
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 5 cut(s) 34, 119, 343, 362, 601
AfaI GTAC 2 cut(s) 250, 738
AfiI CCNNNNNNNGG 3 cut(s) 55, 530, 878
AflII CTTAAG 1 cut(s) 398
AhlI ACTAGT 2 cut(s) 184, 754
AjnI CCWGG 3 cut(s) 450, 499, 664
AluBI AGCT 5 cut(s) 169, 241, 648, 749, 856
AluI AGCT 5 cut(s) 169, 241, 648, 749, 856
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 2 cut(s) 45, 429
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 5 cut(s) 34, 119, 343, 362, 601
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
Asp718I GGTACC 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 46, 789
AsuC2I CCSGG 3 cut(s) 31, 49, 50
AsuHPI GGTGA 3 cut(s) 398, 404, 701
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 789
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 1069
BbvI GCAGC 1 cut(s) 706
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 452, 501, 666
BcnI CCSGG 3 cut(s) 31, 49, 50
BcoDI GTCTC 1 cut(s) 114
BcuI ACTAGT 2 cut(s) 184, 754
BfaI CTAG 5 cut(s) 185, 581, 674, 755, 1070
BfrI CTTAAG 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 2 cut(s) 720, 872
BlsI GCNGC 2 cut(s) 721, 873
Bme1390I CCNGG 6 cut(s) 31, 49, 50, 452, 501, 666
Bme18I GGWCC 1 cut(s) 789
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 46, 789
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 6 cut(s) 31, 49, 50, 452, 501, 666
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 1 cut(s) 895
BmuI ACTGGG 1 cut(s) 913
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 3 cut(s) 31, 49, 50
BsaBI GATNNNNATC 1 cut(s) 983
BsaJI CCNNGG 4 cut(s) 48, 499, 500, 665
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 530, 878
Bse1I ACTGG 1 cut(s) 919
Bse8I GATNNNNATC 1 cut(s) 983
BseBI CCWGG 3 cut(s) 452, 501, 666
BseDI CCNNGG 4 cut(s) 48, 499, 500, 665
BseJI GATNNNNATC 1 cut(s) 983
BseLI CCNNNNNNNGG 3 cut(s) 55, 530, 878
BseMII CTCAG 3 cut(s) 104, 186, 1067
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 6 cut(s) 68, 143, 146, 164, 290, 364
BseXI GCAGC 1 cut(s) 706
BseYI CCCAGC 1 cut(s) 745
BshFI GGCC 2 cut(s) 47, 431
BshNI GGYRCC 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 31, 49
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 55, 530, 878
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 2 cut(s) 47, 431
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 1069
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 2 cut(s) 259, 872
BspANI GGCC 2 cut(s) 47, 431
BspCNI CTCAG 3 cut(s) 105, 187, 1066
BspLI GGNNCC 1 cut(s) 738
BspPI GGATC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 919
BssECI CCNNGG 4 cut(s) 48, 499, 500, 665
BssMI GATC 1 cut(s) 312
Bst2UI CCWGG 3 cut(s) 452, 501, 666
Bst4CI ACNGT 3 cut(s) 323, 459, 949
Bst6I CTCTTC 5 cut(s) 81, 219, 224, 324, 732
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 3 cut(s) 113, 195, 1053
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNI CCWGG 3 cut(s) 452, 501, 666
BstNSI RCATGY 3 cut(s) 497, 772, 878
BstSCI CCNGG 6 cut(s) 29, 47, 48, 450, 499, 664
BstV1I GCAGC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 47, 431
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 926
Cfr13I GGNCC 2 cut(s) 46, 789
Cfr9I CCCGGG 1 cut(s) 48
Csp6I GTAC 2 cut(s) 249, 737
CviAII CATG 6 cut(s) 494, 769, 823, 875, 1082, 1086
CviQI GTAC 2 cut(s) 249, 737
DdeI CTNAG 3 cut(s) 113, 195, 1053
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eam1104I CTCTTC 5 cut(s) 81, 219, 224, 324, 732
EarI CTCTTC 5 cut(s) 81, 219, 224, 324, 732
Eco24I GRGCYC 1 cut(s) 1069
Eco47I GGWCC 1 cut(s) 789
Eco88I CYCGRG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 450, 499, 664
EcoT22I ATGCAT 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 1069
FaeI CATG 6 cut(s) 497, 772, 826, 878, 1085, 1089
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 493, 768, 822, 874, 1081, 1085
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 2 cut(s) 720, 872
FriOI GRGCYC 1 cut(s) 1069
Fsp4HI GCNGC 2 cut(s) 720, 872
FspBI CTAG 5 cut(s) 185, 581, 674, 755, 1070
GluI GCNGC 2 cut(s) 720, 872
GsaI CCCAGC 1 cut(s) 749
HaeIII GGCC 2 cut(s) 47, 431
HapII CCGG 2 cut(s) 31, 49
Hin1II CATG 6 cut(s) 497, 772, 826, 878, 1085, 1089
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 6 cut(s) 95, 107, 584, 698, 819, 899
HpaII CCGG 2 cut(s) 31, 49
HphI GGTGA 3 cut(s) 398, 404, 701
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 5 cut(s) 114, 490, 881, 891, 1056
Hpy188III TCNNGA 3 cut(s) 71, 674, 1070
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 844
HpyCH4III ACNGT 3 cut(s) 323, 459, 949
HpyCH4IV ACGT 2 cut(s) 418, 805
HpyCH4V TGCA 6 cut(s) 143, 202, 772, 886, 1085, 1095
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 3 cut(s) 113, 195, 1053
HpySE526I ACGT 2 cut(s) 418, 805
Hsp92II CATG 6 cut(s) 497, 772, 826, 878, 1085, 1089
KpnI GGTACC 1 cut(s) 740
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 481, 853
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 1 cut(s) 895
MaeI CTAG 5 cut(s) 185, 581, 674, 755, 1070
MaeII ACGT 2 cut(s) 418, 805
MaeIII GTNAC 4 cut(s) 541, 825, 833, 1030
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 1069
MlyI GAGTC 2 cut(s) 104, 116
MmeI TCCRAC 2 cut(s) 63, 859
Mph1103I ATGCAT 1 cut(s) 1087
MseI TTAA 6 cut(s) 42, 123, 189, 399, 1013, 1099
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 31, 49
MspR9I CCNGG 6 cut(s) 31, 49, 50, 452, 501, 666
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 3 cut(s) 452, 501, 666
MwoI GCNNNNNNNGC 1 cut(s) 503
NciI CCSGG 3 cut(s) 31, 49, 50
NdeI CATATG 1 cut(s) 637
NdeII GATC 1 cut(s) 312
NlaIII CATG 6 cut(s) 497, 772, 826, 878, 1085, 1089
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 541
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 3 cut(s) 497, 772, 878
PasI CCCWGGG 1 cut(s) 500
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 4 cut(s) 584, 698, 819, 899
PkrI GCNGC 2 cut(s) 721, 873
PleI GAGTC 2 cut(s) 103, 115
PpsI GAGTC 2 cut(s) 103, 115
Psp1406I AACGTT 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 450, 499, 664
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 3 cut(s) 450, 499, 664
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 2 cut(s) 46, 789
RsaI GTAC 2 cut(s) 250, 738
RsaNI GTAC 2 cut(s) 249, 737
SaqAI TTAA 6 cut(s) 42, 123, 189, 399, 1013, 1099
SatI GCNGC 2 cut(s) 720, 872
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 46, 789
SchI GAGTC 2 cut(s) 104, 116
ScrFI CCNGG 6 cut(s) 31, 49, 50, 452, 501, 666
SduI GDGCHC 1 cut(s) 1069
SfaNI GCATC 1 cut(s) 895
SinI GGWCC 1 cut(s) 789
SmaI CCCGGG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 398, 793
SmoI CTYRAG 2 cut(s) 398, 793
SpeI ACTAGT 2 cut(s) 184, 754
SsiI CCGC 2 cut(s) 259, 872
SspMI CTAG 5 cut(s) 185, 581, 674, 755, 1070
StyD4I CCNGG 6 cut(s) 29, 47, 48, 450, 499, 664
TaaI ACNGT 3 cut(s) 323, 459, 949
TaiI ACGT 2 cut(s) 421, 808
TaqI TCGA 3 cut(s) 70, 341, 902
TaqII GACCGA 1 cut(s) 777
TatI WGTACW 1 cut(s) 248
TauI GCSGC 1 cut(s) 874
TfiI GAWTC 4 cut(s) 584, 698, 819, 899
Tru1I TTAA 6 cut(s) 42, 123, 189, 399, 1013, 1099
Tru9I TTAA 6 cut(s) 42, 123, 189, 399, 1013, 1099
TscAI CASTG 2 cut(s) 209, 926
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 3 cut(s) 355, 726, 975
TspGWI ACGGA 3 cut(s) 494, 587, 832
TspMI CCCGGG 1 cut(s) 48
TspRI CASTG 2 cut(s) 209, 926
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 5 cut(s) 34, 119, 343, 362, 601
XbaI TCTAGA 2 cut(s) 673, 1069
XceI RCATGY 3 cut(s) 497, 772, 878
XmaI CCCGGG 1 cut(s) 48
XspI CTAG 5 cut(s) 185, 581, 674, 755, 1070
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.