pycom12g01110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000126
Physical Location & Seq
Reverse (-)
955804 .. 956576
773 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01110.1

Sequence Viewer

Length: 720 bp
ATGACAATAATGGAAGAGATAGCTTCGAAGTTGAAGCTATCGGAGACGAAGCAGCGGAGCGTTGGCAAATCCCACGAGATCCTGCGCGCCCAGGCGGATTCCATGCTCGCATTCACCCTCAACTGGAAGGACCTCGACGACCACTTCGACTCCGTCAGGAACTCACTCTATGCCGCATTCGTAGGGCTCCTGGAGCGGGAGAAGGAGATTGGGTCCCGTTTCGCGGACTTGGAAGTGAAAGAGAAGGAATTTGACTCGGCGATGGCGGTGAAAGGTAGGGAATTGCAGGGCATTGTGCGGGAGGTTGAAGAAGGTAAGTCGCAGTTGCAATCTATTAAGTTATCTTTCGAAAAGTATTCGGTTGAAGAAGGTAGATTAGGAAAAGTACAGAAATTGGTTAAGGGGAAGGAGATGGAGTATTATAATATGCAGCAACGGATGAAAGAATTGTCGAAAGAGATCGAGGCGAAGGAGAGGCAGTTGAATGCGGTTAGGGTTAAGGTTGTGGAGCAATGGAAAGAGTTTGATTTGAGAGACGACGGAATTAGAGCTCAGCAAACATTGATTGAGGAATACGACAGAGAGGTGAAGTCGAAAGAGCAGAAACTCGGTTTGATTGAGAAGGATTTGTGTGAGCTTGAGAAGTCGGTGGGGGAGTGGGACTGTAAAGTTGAATTGAAACAGTTGGAACTTAAAAGAAGTGTTCAGAAGGGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

240

Amino Acids

27.87

Weight (kDa)

5.77

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 2 cut(s) 87, 224
AciI CCGC 8 cut(s) 55, 95, 174, 196, 224, 266, 298, 488
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 123, 196, 223
AgsI TTSAA 6 cut(s) 34, 308, 365, 484, 674, 679
AjnI CCWGG 2 cut(s) 90, 189
AluBI AGCT 4 cut(s) 23, 37, 551, 637
AluI AGCT 4 cut(s) 23, 37, 551, 637
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 38, 528
AlwI GGATC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 52, 430
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 2 cut(s) 87, 89
AspS9I GGNCC 2 cut(s) 130, 213
AsuHPI GGTGA 3 cut(s) 106, 280, 598
AsuII TTCGAA 2 cut(s) 26, 348
AvaII GGWCC 2 cut(s) 130, 213
BanII GRGCYC 2 cut(s) 189, 553
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 64, 442
BccI CCATC 2 cut(s) 256, 406
BciT130I CCWGG 2 cut(s) 92, 191
BcoDI GTCTC 2 cut(s) 38, 528
BisI GCNGC 3 cut(s) 53, 174, 431
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 3 cut(s) 54, 175, 432
Bme1390I CCNGG 2 cut(s) 92, 191
Bme18I GGWCC 2 cut(s) 130, 213
BmgT120I GGNCC 2 cut(s) 130, 213
BmiI GGNNCC 3 cut(s) 188, 214, 215
BmrFI CCNGG 2 cut(s) 92, 191
BpmI CTGGAG 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 2 cut(s) 26, 348
BpuEI CTTGAG 1 cut(s) 659
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 8 cut(s) 134, 164, 197, 227, 401, 431, 464, 494
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 196, 223
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 518
BseBI CCWGG 2 cut(s) 92, 191
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 123, 196, 223
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 128
BsePI GCGCGC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 64, 442
Bsh1236I CGCG 2 cut(s) 87, 224
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 2 cut(s) 199, 674
BslI CCNNNNNNNGG 3 cut(s) 123, 196, 223
BsmAI GTCTC 2 cut(s) 38, 528
BsmBI CGTCTC 2 cut(s) 38, 528
BsmFI GGGAC 2 cut(s) 199, 674
BsmI GAATGC 3 cut(s) 110, 176, 490
Bsp119I TTCGAA 2 cut(s) 26, 348
Bsp1286I GDGCHC 2 cut(s) 189, 553
Bsp143I GATC 2 cut(s) 78, 459
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 8 cut(s) 55, 95, 174, 196, 224, 266, 298, 488
BspCNI CTCAG 1 cut(s) 565
BspFNI CGCG 2 cut(s) 87, 224
BspLI GGNNCC 3 cut(s) 188, 214, 215
BspPI GGATC 1 cut(s) 73
BspT104I TTCGAA 2 cut(s) 26, 348
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 518
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 90
BssHII GCGCGC 1 cut(s) 85
BssMI GATC 2 cut(s) 78, 459
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 92, 191
Bst4CI ACNGT 2 cut(s) 665, 684
Bst6I CTCTTC 1 cut(s) 9
BstBI TTCGAA 2 cut(s) 26, 348
BstC8I GCNNGC 2 cut(s) 87, 108
BstDEI CTNAG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 2 cut(s) 87, 224
BstHHI GCGC 2 cut(s) 87, 89
BstKTI GATC 2 cut(s) 81, 462
BstMAI GTCTC 2 cut(s) 38, 528
BstMBI GATC 2 cut(s) 78, 459
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 92, 191
BstSCI CCNGG 2 cut(s) 90, 189
BstUI CGCG 2 cut(s) 87, 224
BstV1I GCAGC 2 cut(s) 64, 442
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 87, 108
CfoI GCGC 2 cut(s) 87, 89
Cfr13I GGNCC 2 cut(s) 130, 213
Csp6I GTAC 1 cut(s) 386
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 23, 37, 187, 551, 637
CviKI_1 RGCY 5 cut(s) 23, 37, 187, 551, 637
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 552
DpnI GATC 2 cut(s) 80, 461
DpnII GATC 2 cut(s) 78, 459
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 551
Eco24I GRGCYC 2 cut(s) 189, 553
Eco47I GGWCC 2 cut(s) 130, 213
Eco53kI GAGCTC 1 cut(s) 551
EcoICRI GAGCTC 1 cut(s) 551
EcoO109I RGGNCCY 2 cut(s) 130, 213
EcoRII CCWGG 2 cut(s) 90, 189
EcoT38I GRGCYC 2 cut(s) 189, 553
Esp3I CGTCTC 2 cut(s) 38, 528
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 104, 171, 423, 428
FaqI GGGAC 2 cut(s) 199, 674
FatI CATG 1 cut(s) 102
FauI CCCGC 2 cut(s) 189, 291
Fnu4HI GCNGC 3 cut(s) 53, 174, 431
FokI GGATG 1 cut(s) 451
FriOI GRGCYC 2 cut(s) 189, 553
Fsp4HI GCNGC 3 cut(s) 53, 174, 431
GlaI GCGC 2 cut(s) 86, 88
GluI GCNGC 3 cut(s) 53, 174, 431
GsuI CTGGAG 1 cut(s) 212
HhaI GCGC 2 cut(s) 87, 89
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 2 cut(s) 85, 87
HinP1I GCGC 2 cut(s) 85, 87
HinfI GANTC 3 cut(s) 98, 149, 254
HphI GGTGA 3 cut(s) 106, 280, 598
Hpy188I TCNGA 2 cut(s) 43, 708
Hpy188III TCNNGA 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 140, 542
HpyAV CCTTC 9 cut(s) 121, 196, 238, 305, 362, 400, 463, 616, 703
HpyCH4III ACNGT 2 cut(s) 665, 684
HpyCH4V TGCA 3 cut(s) 286, 328, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 552
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 2 cut(s) 85, 87
KflI GGGWCCC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 78, 459
LmnI GCTCC 4 cut(s) 57, 192, 193, 508
LpnPI CCDG 8 cut(s) 77, 95, 104, 109, 142, 176, 203, 272
Lsp1109I GCAGC 2 cut(s) 64, 442
MalI GATC 2 cut(s) 80, 461
MbiI CCGCTC 1 cut(s) 196
MboI GATC 2 cut(s) 78, 459
MboII GAAGA 3 cut(s) 26, 320, 377
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 189, 553
MluCI AATT 6 cut(s) 248, 281, 392, 446, 543, 674
MlyI GAGTC 2 cut(s) 143, 248
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 7 cut(s) 128, 143, 295, 457, 468, 562, 577
MseI TTAA 4 cut(s) 336, 399, 498, 693
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 92, 191
Mva1269I GAATGC 3 cut(s) 110, 176, 490
MvaI CCWGG 2 cut(s) 92, 191
MvnI CGCG 2 cut(s) 87, 224
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 78, 459
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 188, 214, 215
NmeAIII GCCGAG 1 cut(s) 236
NspV TTCGAA 2 cut(s) 26, 348
PauI GCGCGC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 3 cut(s) 110, 176, 490
PfeI GAWTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 54, 175, 432
PleI GAGTC 2 cut(s) 143, 248
PpsI GAGTC 2 cut(s) 143, 248
PpuMI RGGWCCY 2 cut(s) 130, 213
PsiI TTATAA 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 553
Psp5II RGGWCCY 2 cut(s) 130, 213
Psp6I CCWGG 2 cut(s) 90, 189
PspGI CCWGG 2 cut(s) 90, 189
PspN4I GGNNCC 3 cut(s) 188, 214, 215
PspPI GGNCC 2 cut(s) 130, 213
PspPPI RGGWCCY 2 cut(s) 130, 213
PsuI RGATCY 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 152
PteI GCGCGC 1 cut(s) 85
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 4 cut(s) 336, 399, 498, 693
SatI GCNGC 3 cut(s) 53, 174, 431
Sau3AI GATC 2 cut(s) 78, 459
Sau96I GGNCC 2 cut(s) 130, 213
SchI GAGTC 2 cut(s) 143, 248
ScrFI CCNGG 2 cut(s) 92, 191
SduI GDGCHC 2 cut(s) 189, 553
SfuI TTCGAA 2 cut(s) 26, 348
SinI GGWCC 2 cut(s) 130, 213
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 6 cut(s) 248, 281, 392, 446, 543, 674
SsiI CCGC 8 cut(s) 55, 95, 174, 196, 224, 266, 298, 488
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 90, 189
TaaI ACNGT 2 cut(s) 665, 684
TaqI TCGA 7 cut(s) 26, 135, 147, 348, 452, 462, 593
TasI AATT 6 cut(s) 248, 281, 392, 446, 543, 674
TatI WGTACW 1 cut(s) 385
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 4 cut(s) 336, 399, 498, 693
Tru9I TTAA 4 cut(s) 336, 399, 498, 693
TseI GCWGC 2 cut(s) 52, 430
TspDTI ATGAA 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 142, 451, 555
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 2 cut(s) 130, 213
XapI RAATTY 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.