Rorug07G0303500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000126
Physical Location & Seq
Reverse (-)
30219430 .. 30226122
6693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0303500.1

Sequence Viewer

Length: 2331 bp
ATGGCCAATGGTGAATCAGAAGTACTCTCTGCTCGTCTATATCAGCCGCTTCTTTCCAACTCCGCTGCCGATGTAGCTCCTTGTTCAAATGGCGGGAACAAGAACCGCTTCTTTTTGTCATTGTCGAAATGGGTTCTCAAATTTACAATGTGGTTAATTTTCATTGCATGGGTTGTTCACTTTTTATTAATACCTACGGATCTTGGGACTACTCTATCTAATGATTGGCTTGCTGCTACTGGTGGAACTCTATTTGGAGACAGTGGGAGTGTATTGCTGTTACACAGCGGTCCAATTTTGGCTATCGCTATACTTGCTTTTCCATATATCATTATTGTTGGGGAAGAAGAACAACAGCTTCAAGAGTATGCATGCAATACTCTTAAAGACCGGAATTGTACGCCGCCTATCTTGTGTTCGTTAAAAAGCACATTAATCTACTACAGGAAGAAGGACAAGCCCCCTCGATTCAACTTATGGTCCTTTCCTGTTCTGGTGGATGGACCATTTGGAGTTGTCTCTGCTGCCGAATTGATCGGCATTATTCTCTTTGTTGTATTTGTTCTCTGGGATCTGTATGCATTCACAGTAGTGAACTTTGAGCTGTTAGCCACCTATGGTGATTTGAGCCTTGGAGAAACAAGATTAATGTTTCTGCACAATTTGGCGCGTAATCTTGGACAGATTGGCTTGGTTTGCTTGACATTTTTGTTCCTGCCGGTTGCAAGGGGATCAGTTCTATTTCGCCTTATAAATATTCCTTTGGAGCATGCTACGAGGTATCATGTGTGGCTGGGAAATCTCGCAATGCTGCTCTTTGCTACCCACGGCCTATTATATGTATTGATATGGACAACTAAGGGTTGTTTCTTTAGTCAAATATTGGAGTGGAAGGATACTGGTGTTGCCAATCTTGCAGGATCAATTAGTCTTAGTGTTGGTCTGTTGATGTGGATCACAACACTTCCTCCGGTCAGAAAGCGGAATTTTGAGTTGTTCCTCTACACTCATCAGCTATACATCATCTTCGTGGTCTTTTTGGCTTTGCACATTGGTTATCTCGTTTTTCCTACAGCTGCAGGCCCCATATTTATTTTTGTTCTTGATCGTTTTCTGAGGTTCTGTCAATCACGAAAGAGTGTTGATATAATTTCAGCCAAGTGCCTTCCATGTGGAACTGTAGAGTTGGTCCTCGCAAAACCTGAAAGTTTGCGGTACAACGCCCTCAGTTTTGTCTTTGTTCGAATTTGGGAGCTATCATGGCTACAATGGCATCCTTTCAGTGTTTCGTCCAGTCCTATGGATGGTAAATATCATATATCTGTTTTGATAAAGGCTATTGGGAAATGGACTGAAAAGCTAAGAGATTCTGTCTTGAAAAATTTGGAGCTACCTTGCACAAAGTTAACAATTTCTGTTGAGGGTCCTTACGGGCATGAGAAACCGTACCACATGATGTATGAAAATCTCATCTTAGTAGCAGGTGGCATTGGGATTTCACCTTTCTTGGCTGTCTTAAGTGACATTCTCCACTCTGTTAAGGAAGGAAAACCTTGCCTACCAAGAAATATTTTACTTGTCTGGACAGTCAAAAGATCAGATGAGCTTTCTCTTCTTTCAACCATTGGCATGGACTCAACTATCTGTCCATCTTTCTCTAATAAACTAAATCTTCAGGCCCATATTTACGTTACTCGGGAGTCTGAATTTCCCTCGGAACATGGTGAAGTTGGAAATAGTACTGCAGATTTTTCTGATCTATGTCCCATGTCCAAAAGGTCTGGAATGTCCGTTTTGGTTGGTACTGGACATAATGTATGGTCTTGCCTGTATGTTATCTCATCTACTTTAGGCTTTGTCATCTTGTTGGGTTTGTTGGATTTCTTCTACATCAACCCCTTTGATATAACTTCATGGTCATACAAAGGATTTCTATTCTTAGCCTGTATGGTCGCAAGTGTCTTCATCTTTGGTGGTCTGGTGGTTTGTTTATGGCATCTTTCGGAGAAAAGAACTTCAGCAGAGGAAAAATGTGAGGATGATGAATCAAATTTTGGTAAGATTGAGCACACAGAAACTGTAACTCACAATGTTGCACACCAGGAAAGTCCTGCAAGTTTAACCAGGAGCATTCGTTATGGTGCAAGGCCAGACTTTAAAGAAATTTTTGGAAGCGTATCAAAGAATTGGGGCCATGTTGATGTGGGTGTCATTGTGTGTGGTCCTCCAACTCTTCAATCAAGTGTAGCTAAAGAAATCAGGTCACAAAGTATAAGAAGACAATCTGGAGATCCTATCTACCATTTCAACAGCCATAGCTTTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

776

Amino Acids

86.77

Weight (kDa)

7.3

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferric_reduct PF01794 226 - 347 1e-20 Ferric reductase like transmembrane component
FAD_binding_8 PF08022 380 - 479 2.5e-19 FAD-binding domain
NAD_binding_6 PF08030 487 - 577 6.1e-11 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 752
AarI CACCTGC 1 cut(s) 1472
Acc36I ACCTGC 1 cut(s) 1472
AccII CGCG 1 cut(s) 670
AciI CCGC 8 cut(s) 47, 63, 93, 106, 288, 404, 982, 1213
AclWI GGATC 6 cut(s) 207, 579, 739, 928, 962, 2285
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 7 cut(s) 140, 985, 1245, 1381, 1706, 2050, 2163
AcuI CTGAAG 2 cut(s) 1658, 2001
AfaI GTAC 6 cut(s) 24, 400, 1217, 1448, 1741, 1804
AfiI CCNNNNNNNGG 1 cut(s) 1304
AflII CTTAAG 1 cut(s) 1516
AgsI TTSAA 7 cut(s) 87, 362, 472, 1378, 1620, 2237, 2308
AjnI CCWGG 2 cut(s) 2100, 2123
AjuI GAANNNNNNNTTGG 2 cut(s) 2037, 2069
AleI CACNNNNGTG 1 cut(s) 590
Alw21I GWGCWC 1 cut(s) 2070
Alw26I GTCTC 2 cut(s) 252, 523
AlwI GGATC 6 cut(s) 207, 579, 739, 928, 962, 2285
AlwNI CAGNNNCTG 1 cut(s) 2078
Ama87I CYCGRG 1 cut(s) 1695
AoxI GGCC 6 cut(s) 3, 829, 1081, 1677, 2147, 2191
ApeKI GCWGC 5 cut(s) 65, 233, 524, 811, 1076
ApoI RAATTY 7 cut(s) 140, 985, 1245, 1381, 1706, 2050, 2163
AseI ATTAAT 3 cut(s) 188, 434, 647
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 9 cut(s) 290, 480, 503, 1082, 1189, 1424, 1678, 2191, 2222
AsuHPI GGTGA 4 cut(s) 23, 632, 1491, 1736
AsuII TTCGAA 1 cut(s) 1243
AvaI CYCGRG 1 cut(s) 1695
AvaII GGWCC 6 cut(s) 290, 480, 503, 1189, 1424, 2222
BaeI ACNNNNGTAYC 2 cut(s) 888, 921
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 1954, 2284
Bbv12I GWGCWC 1 cut(s) 2070
BbvI GCAGC 5 cut(s) 52, 220, 511, 798, 1063
BccI CCATC 3 cut(s) 494, 1298, 1657
BceAI ACGGC 1 cut(s) 844
BciT130I CCWGG 2 cut(s) 2102, 2125
BciVI GTATCC 1 cut(s) 889
BcoDI GTCTC 2 cut(s) 252, 523
BfmI CTRYAG 5 cut(s) 442, 1071, 1077, 1179, 1743
BfrI CTTAAG 1 cut(s) 1516
BfuAI ACCTGC 1 cut(s) 1472
BfuI GTATCC 1 cut(s) 889
BisI GCNGC 7 cut(s) 47, 66, 234, 404, 525, 812, 1077
BlsI GCNGC 7 cut(s) 48, 67, 235, 405, 526, 813, 1078
BmcAI AGTACT 2 cut(s) 24, 1741
Bme1390I CCNGG 2 cut(s) 2102, 2125
Bme18I GGWCC 6 cut(s) 290, 480, 503, 1189, 1424, 2222
BmeT110I CYCGRG 1 cut(s) 1695
BmgT120I GGNCC 9 cut(s) 290, 480, 503, 1082, 1189, 1424, 1678, 2191, 2222
BmiI GGNNCC 3 cut(s) 1084, 1425, 2192
BmrFI CCNGG 2 cut(s) 2102, 2125
BmsI GCATC 2 cut(s) 1282, 2005
BpiI GAAGAC 2 cut(s) 1954, 2284
BpmI CTGGAG 1 cut(s) 2307
Bpu14I TTCGAA 1 cut(s) 1243
BsaBI GATNNNNATC 1 cut(s) 953
BsaJI CCNNGG 3 cut(s) 631, 826, 1713
BsaWI WCCGGW 2 cut(s) 390, 970
BsaXI ACNNNNNCTCC 4 cut(s) 952, 982, 2119, 2149
Bsc4I CCNNNNNNNGG 1 cut(s) 1304
Bse118I RCCGGY 1 cut(s) 718
Bse1I ACTGG 4 cut(s) 244, 904, 1293, 1810
Bse3DI GCAATG 2 cut(s) 162, 813
Bse8I GATNNNNATC 1 cut(s) 953
BseBI CCWGG 2 cut(s) 2102, 2125
BseDI CCNNGG 3 cut(s) 631, 826, 1713
BseGI GGATG 4 cut(s) 505, 1273, 1309, 2044
BseJI GATNNNNATC 1 cut(s) 953
BseLI CCNNNNNNNGG 1 cut(s) 1304
BseMI GCAATG 2 cut(s) 162, 813
BseMII CTCAG 2 cut(s) 1106, 1240
BseNI ACTGG 4 cut(s) 244, 904, 1293, 1810
BseXI GCAGC 5 cut(s) 52, 220, 511, 798, 1063
BseYI CCCAGC 1 cut(s) 793
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 670
BshFI GGCC 6 cut(s) 5, 831, 1083, 1679, 2149, 2193
BsiHKAI GWGCWC 1 cut(s) 2070
BsiHKCI CYCGRG 1 cut(s) 1695
BsiSI CCGG 3 cut(s) 391, 719, 971
BslFI GGGAC 2 cut(s) 220, 1749
BslI CCNNNNNNNGG 1 cut(s) 1304
BsmAI GTCTC 2 cut(s) 252, 523
BsmFI GGGAC 2 cut(s) 220, 1749
BsmI GAATGC 2 cut(s) 581, 2130
BsnI GGCC 6 cut(s) 5, 831, 1083, 1679, 2149, 2193
BsoBI CYCGRG 1 cut(s) 1695
Bsp119I TTCGAA 1 cut(s) 1243
Bsp1286I GDGCHC 1 cut(s) 2070
BspACI CCGC 8 cut(s) 47, 63, 93, 106, 288, 404, 982, 1213
BspANI GGCC 6 cut(s) 5, 831, 1083, 1679, 2149, 2193
BspCNI CTCAG 2 cut(s) 1107, 1239
BspFNI CGCG 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 1084, 1425, 2192
BspMAI CTGCAG 2 cut(s) 1081, 1747
BspMI ACCTGC 1 cut(s) 1472
BspPI GGATC 6 cut(s) 207, 579, 739, 928, 962, 2285
BspT104I TTCGAA 1 cut(s) 1243
BspTI CTTAAG 1 cut(s) 1516
BsrDI GCAATG 2 cut(s) 162, 813
BsrFI RCCGGY 1 cut(s) 718
BsrI ACTGG 4 cut(s) 244, 904, 1293, 1810
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 3 cut(s) 631, 826, 1713
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 2102, 2125
Bst4CI ACNGT 6 cut(s) 263, 589, 1180, 1446, 1588, 2080
Bst6I CTCTTC 2 cut(s) 1617, 2238
BstAFI CTTAAG 1 cut(s) 1516
BstBI TTCGAA 1 cut(s) 1243
BstC8I GCNNGC 4 cut(s) 231, 373, 771, 1081
BstDEI CTNAG 7 cut(s) 858, 932, 1115, 1226, 1361, 1474, 1939
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 4 cut(s) 505, 1273, 1309, 2044
BstFNI CGCG 1 cut(s) 670
BstHHI GCGC 1 cut(s) 670
BstMAI GTCTC 2 cut(s) 252, 523
BstMWI GCNNNNNNNGC 6 cut(s) 74, 314, 696, 914, 1261, 1270
BstNI CCWGG 2 cut(s) 2102, 2125
BstNSI RCATGY 2 cut(s) 375, 773
BstSCI CCNGG 2 cut(s) 2100, 2123
BstSFI CTRYAG 5 cut(s) 442, 1071, 1077, 1179, 1743
BstUI CGCG 1 cut(s) 670
BstV1I GCAGC 5 cut(s) 52, 220, 511, 798, 1063
BstV2I GAAGAC 2 cut(s) 1954, 2284
BstX2I RGATCY 3 cut(s) 199, 571, 2290
BstXI CCANNNNNNTGG 2 cut(s) 1300, 1630
BstYI RGATCY 3 cut(s) 199, 571, 2290
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 6 cut(s) 5, 831, 1083, 1679, 2149, 2193
BtgI CCRYGG 1 cut(s) 826
BtsCI GGATG 4 cut(s) 505, 1273, 1309, 2044
BtsIMutI CAGTG 2 cut(s) 268, 1288
BveI ACCTGC 1 cut(s) 1472
Cac8I GCNNGC 4 cut(s) 231, 373, 771, 1081
CaiI CAGNNNCTG 1 cut(s) 2078
CfoI GCGC 1 cut(s) 670
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 9 cut(s) 290, 480, 503, 1082, 1189, 1424, 1678, 2191, 2222
Csp6I GTAC 6 cut(s) 23, 399, 1216, 1447, 1740, 1803
CviQI GTAC 6 cut(s) 23, 399, 1216, 1447, 1740, 1803
DdeI CTNAG 7 cut(s) 858, 932, 1115, 1226, 1361, 1474, 1939
DraI TTTAAA 1 cut(s) 2158
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1617, 2238
EarI CTCTTC 2 cut(s) 1617, 2238
Eco130I CCWWGG 1 cut(s) 631
Eco47I GGWCC 6 cut(s) 290, 480, 503, 1189, 1424, 2222
Eco57I CTGAAG 2 cut(s) 1658, 2001
Eco88I CYCGRG 1 cut(s) 1695
EcoO109I RGGNCCY 2 cut(s) 1082, 1424
EcoRII CCWGG 2 cut(s) 2100, 2123
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 2 cut(s) 373, 583
ErhI CCWWGG 1 cut(s) 631
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 2 cut(s) 220, 1749
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 7 cut(s) 47, 66, 234, 404, 525, 812, 1077
FokI GGATG 4 cut(s) 512, 1260, 1316, 2051
Fsp4HI GCNGC 7 cut(s) 47, 66, 234, 404, 525, 812, 1077
GlaI GCGC 1 cut(s) 669
GluI GCNGC 7 cut(s) 47, 66, 234, 404, 525, 812, 1077
GsaI CCCAGC 1 cut(s) 797
GsuI CTGGAG 1 cut(s) 2307
HaeIII GGCC 6 cut(s) 5, 831, 1083, 1679, 2149, 2193
HapII CCGG 3 cut(s) 391, 719, 971
HhaI GCGC 1 cut(s) 670
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HincII GTYRAC 1 cut(s) 1407
HindII GTYRAC 1 cut(s) 1407
HinfI GANTC 6 cut(s) 14, 468, 1367, 1634, 1700, 2045
HpaI GTTAAC 1 cut(s) 1407
HpaII CCGG 3 cut(s) 391, 719, 971
HphI GGTGA 4 cut(s) 23, 632, 1491, 1736
Hpy166II GTNNAC 3 cut(s) 178, 595, 1407
Hpy188I TCNGA 8 cut(s) 19, 977, 1116, 1600, 1705, 1717, 1756, 2005
Hpy188III TCNNGA 8 cut(s) 362, 1103, 1131, 1375, 1582, 1697, 1782, 2286
Hpy8I GTNNAC 3 cut(s) 178, 595, 1407
HpyAV CCTTC 4 cut(s) 445, 886, 1175, 1538
HpyCH4III ACNGT 6 cut(s) 263, 589, 1180, 1446, 1588, 2080
HpyCH4IV ACGT 1 cut(s) 1689
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 314, 696, 914, 1261, 1270
HpyF3I CTNAG 7 cut(s) 858, 932, 1115, 1226, 1361, 1474, 1939
HpySE526I ACGT 1 cut(s) 1689
HspAI GCGC 1 cut(s) 668
KspAI GTTAAC 1 cut(s) 1407
LmnI GCTCC 5 cut(s) 82, 766, 1252, 1387, 2127
Lsp1109I GCAGC 5 cut(s) 52, 220, 511, 798, 1063
LweI GCATC 2 cut(s) 1282, 2005
MaeII ACGT 1 cut(s) 1689
MaeIII GTNAC 5 cut(s) 279, 1520, 1690, 2080, 2262
MflI RGATCY 3 cut(s) 199, 571, 2290
MhlI GDGCHC 1 cut(s) 2070
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 1628, 1709
MmeI TCCRAC 4 cut(s) 81, 1711, 1857, 2252
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 373, 583
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 4 cut(s) 590, 1028, 1628, 2199
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 65, 288, 1076
MspCI CTTAAG 1 cut(s) 1516
MspI CCGG 3 cut(s) 391, 719, 971
MspR9I CCNGG 2 cut(s) 2102, 2125
Mva1269I GAATGC 2 cut(s) 581, 2130
MvaI CCWGG 2 cut(s) 2102, 2125
MvnI CGCG 1 cut(s) 670
MwoI GCNNNNNNNGC 6 cut(s) 74, 314, 696, 914, 1261, 1270
NlaIV GGNNCC 3 cut(s) 1084, 1425, 2192
NmuCI GTSAC 2 cut(s) 1520, 2262
NsiI ATGCAT 2 cut(s) 373, 583
NspI RCATGY 2 cut(s) 375, 773
NspV TTCGAA 1 cut(s) 1243
OliI CACNNNNGTG 1 cut(s) 590
PaeI GCATGC 2 cut(s) 375, 773
PaqCI CACCTGC 1 cut(s) 1472
PctI GAATGC 2 cut(s) 581, 2130
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 4 cut(s) 14, 468, 1367, 2045
PkrI GCNGC 7 cut(s) 48, 67, 235, 405, 526, 813, 1078
PleI GAGTC 2 cut(s) 1628, 1708
PpsI GAGTC 2 cut(s) 1628, 1708
PpuMI RGGWCCY 1 cut(s) 1424
PshBI ATTAAT 3 cut(s) 188, 434, 647
PsiI TTATAA 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 1424
Psp6I CCWGG 2 cut(s) 2100, 2123
PspFI CCCAGC 1 cut(s) 793
PspGI CCWGG 2 cut(s) 2100, 2123
PspN4I GGNNCC 3 cut(s) 1084, 1425, 2192
PspPI GGNCC 9 cut(s) 290, 480, 503, 1082, 1189, 1424, 1678, 2191, 2222
PspPPI RGGWCCY 1 cut(s) 1424
PstI CTGCAG 2 cut(s) 1081, 1747
PstNI CAGNNNCTG 1 cut(s) 2078
PsuI RGATCY 3 cut(s) 199, 571, 2290
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 6 cut(s) 24, 400, 1217, 1448, 1741, 1804
RsaNI GTAC 6 cut(s) 23, 399, 1216, 1447, 1740, 1803
RseI CAYNNNNRTG 4 cut(s) 590, 1028, 1628, 2199
SatI GCNGC 7 cut(s) 47, 66, 234, 404, 525, 812, 1077
Sau96I GGNCC 9 cut(s) 290, 480, 503, 1082, 1189, 1424, 1678, 2191, 2222
ScaI AGTACT 2 cut(s) 24, 1741
SchI GAGTC 2 cut(s) 1628, 1709
ScrFI CCNGG 2 cut(s) 2102, 2125
SduI GDGCHC 1 cut(s) 2070
SfaNI GCATC 2 cut(s) 1282, 2005
SfcI CTRYAG 5 cut(s) 442, 1071, 1077, 1179, 1743
SfuI TTCGAA 1 cut(s) 1243
SinI GGWCC 6 cut(s) 290, 480, 503, 1189, 1424, 2222
SmiMI CAYNNNNRTG 4 cut(s) 590, 1028, 1628, 2199
SmlI CTYRAG 1 cut(s) 1516
SmoI CTYRAG 1 cut(s) 1516
SphI GCATGC 2 cut(s) 375, 773
SsiI CCGC 8 cut(s) 47, 63, 93, 106, 288, 404, 982, 1213
SspI AATATT 3 cut(s) 757, 882, 1570
StyD4I CCNGG 2 cut(s) 2100, 2123
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 6 cut(s) 263, 589, 1180, 1446, 1588, 2080
TaiI ACGT 1 cut(s) 1692
TaqI TCGA 3 cut(s) 125, 466, 1243
TatI WGTACW 2 cut(s) 22, 1739
TauI GCSGC 2 cut(s) 49, 406
TfiI GAWTC 4 cut(s) 14, 468, 1367, 2045
TscAI CASTG 2 cut(s) 268, 1288
TseFI GTSAC 2 cut(s) 1520, 2262
TseI GCWGC 5 cut(s) 65, 233, 524, 811, 1076
Tsp45I GTSAC 2 cut(s) 1520, 2262
TspDTI ATGAA 5 cut(s) 151, 1476, 1902, 1954, 2058
TspGWI ACGGA 2 cut(s) 212, 1780
TspRI CASTG 2 cut(s) 268, 1288
Vha464I CTTAAG 1 cut(s) 1516
VpaK11BI GGWCC 6 cut(s) 290, 480, 503, 1189, 1424, 2222
VspI ATTAAT 3 cut(s) 188, 434, 647
XapI RAATTY 7 cut(s) 140, 985, 1245, 1381, 1706, 2050, 2163
XceI RCATGY 2 cut(s) 375, 773
XmnI GAANNNNTTC 1 cut(s) 107
ZrmI AGTACT 2 cut(s) 24, 1741
Zsp2I ATGCAT 2 cut(s) 373, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.