Rmu_co8055994.1_g000001

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8055994.1
OG0000126
Physical Location & Seq
Forward (+)
1 .. 353
353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8055994.1_g000001.1.cds

Sequence Viewer

Length: 353 bp
catcatctttggcgtatggaaattatggacagcatgggcaggttggtgatatggctgccaactctagtgaagttgatagatcttcatctttggcatatggaaattacggacagcttgggcagtttggtgatatggctgccaactctagtgaagttgatagatcttcatctttggtgagtgaaattcatggacagcatgggcagtttggttatatggctgccaacttagctgaagttaatcctcgttttggtaccatagatgaagttgatcctcattttggtgtacataatcttcctaacccttattcatccatggatttcaccttcttccctggccgttatggcccttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

116

Amino Acids

12.51

Weight (kDa)

4.68

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 252, 284
AfiI CCNNNNNNNGG 2 cut(s) 247, 277
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 2 cut(s) 114, 229
AluI AGCT 2 cut(s) 114, 229
AlwI GGATC 1 cut(s) 262
AoxI GGCC 2 cut(s) 333, 342
ApeKI GCWGC 3 cut(s) 55, 136, 217
ApoI RAATTY 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 4 cut(s) 58, 139, 186, 312
BanI GGYRCC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbvI GCAGC 3 cut(s) 42, 123, 204
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 332
BfaI CTAG 2 cut(s) 65, 146
BfuAI ACCTGC 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 341
BglII AGATCT 2 cut(s) 79, 160
BisI GCNGC 3 cut(s) 56, 137, 218
BlsI GCNGC 3 cut(s) 57, 138, 219
Bme1390I CCNGG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 84, 165
BsaJI CCNNGG 2 cut(s) 311, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 277
Bse8I GATNNNNATC 2 cut(s) 84, 165
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 311, 330
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 2 cut(s) 84, 165
BseLI CCNNNNNNNGG 2 cut(s) 247, 277
BseXI GCAGC 3 cut(s) 42, 123, 204
BshFI GGCC 2 cut(s) 335, 344
BshNI GGYRCC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 247, 277
BsnI GGCC 2 cut(s) 335, 344
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 3 cut(s) 79, 160, 267
Bsp19I CCATGG 1 cut(s) 311
BspANI GGCC 2 cut(s) 335, 344
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 311, 330
BssMI GATC 3 cut(s) 79, 160, 267
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 82, 163, 270
BstMBI GATC 3 cut(s) 79, 160, 267
BstMWI GCNNNNNNNGC 2 cut(s) 226, 341
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 42, 123, 204
BstX2I RGATCY 2 cut(s) 79, 160
BstYI RGATCY 2 cut(s) 79, 160
BsuRI GGCC 2 cut(s) 335, 344
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 251, 283
CviAII CATG 4 cut(s) 34, 187, 196, 312
CviJI RGCY 7 cut(s) 55, 114, 136, 217, 229, 335, 344
CviKI_1 RGCY 7 cut(s) 55, 114, 136, 217, 229, 335, 344
CviQI GTAC 2 cut(s) 251, 283
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 81, 162, 269
DpnII GATC 3 cut(s) 79, 160, 267
EaeI YGGCCR 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 4 cut(s) 37, 190, 199, 315
FatI CATG 4 cut(s) 33, 186, 195, 311
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 56, 137, 218
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 56, 137, 218
FspBI CTAG 2 cut(s) 65, 146
GluI GCNGC 3 cut(s) 56, 137, 218
HaeIII GGCC 2 cut(s) 335, 344
Hin1II CATG 4 cut(s) 37, 190, 199, 315
HphI GGTGA 4 cut(s) 58, 139, 186, 312
Hpy166II GTNNAC 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 341
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 4 cut(s) 37, 190, 199, 315
KpnI GGTACC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 79, 160, 267
LpnPI CCDG 3 cut(s) 25, 317, 344
Lsp1109I GCAGC 3 cut(s) 42, 123, 204
MaeI CTAG 2 cut(s) 65, 146
MalI GATC 3 cut(s) 81, 162, 269
MboI GATC 3 cut(s) 79, 160, 267
MboII GAAGA 4 cut(s) 74, 155, 283, 318
MflI RGATCY 2 cut(s) 79, 160
MluCI AATT 3 cut(s) 21, 102, 182
MnlI CCTC 2 cut(s) 251, 281
MseI TTAA 2 cut(s) 236, 351
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 226, 341
NcoI CCATGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 96
NdeII GATC 3 cut(s) 79, 160, 267
NlaIII CATG 4 cut(s) 37, 190, 199, 315
NlaIV GGNNCC 1 cut(s) 252
PkrI GCNGC 3 cut(s) 57, 138, 219
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 2 cut(s) 79, 160
RsaI GTAC 2 cut(s) 252, 284
RsaNI GTAC 2 cut(s) 251, 283
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 236, 351
SatI GCNGC 3 cut(s) 56, 137, 218
Sau3AI GATC 3 cut(s) 79, 160, 267
Sau96I GGNCC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 332
SetI ASST 4 cut(s) 44, 116, 231, 325
SfiI GGCCNNNNNGGCC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 3 cut(s) 21, 102, 182
SspMI CTAG 2 cut(s) 65, 146
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 311
TasI AATT 3 cut(s) 21, 102, 182
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 2 cut(s) 236, 351
Tru9I TTAA 2 cut(s) 236, 351
TseI GCWGC 3 cut(s) 55, 136, 217
TspDTI ATGAA 5 cut(s) 74, 155, 175, 275, 296
TspGWI ACGGA 1 cut(s) 122
XapI RAATTY 1 cut(s) 182
XspI CTAG 2 cut(s) 65, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.