Rh5BG257600

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000126
Physical Location & Seq
Forward (+)
32188555 .. 32202802
14248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG257600.1

Sequence Viewer

Length: 543 bp
ATGGAGGAGGAGATAGCATCGGAGTTGGGAGAATCGGAGTTGAAGCAGAGAAATGTGAGAGAAGCGTGGAAGGAGCTGAACGACCACTTTGACTCGACCCGGAGAGGGCTCCAGACCCGGTTCCAGGAGCTCCAGGCCCGCGAGGAGGGAATCGGAGTCCATGAGAAGCTGTTGGAGGTGAAACAGCTGAGATTCGAAGCTCAGGCCAAGGGATTGAATGAAGTTGAGAAGCGGGCCAAAGAAGGTAAGAGTCAGTTGGAGTCTCTTAGGGTTTTGATTGAAAAACATGAAGAAGAGCTTGGTGTTAAAGAAAAGAAGCTTTCGGAGGTTGGGGAATTGGTTGGGGAAAAGGAGAGGGAGTATGATTTGATTCAGAACCGTGTGAAAGAGAGGGGTAAGAGACTGAAGAAGTATAACCGTGCGATTGAGTTGAAAAAGGGGCAACTTGGTTCGATTCTGAAATCGATGATGGATTTGAGTTATGGTTTTCGATGGTTGAGCATCGTCAGATTTCATTTTCACTGTCCAAGTGGCAGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

180

Amino Acids

21.15

Weight (kDa)

8.87

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 139, 232
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 3 cut(s) 105, 124, 145
AgsI TTSAA 4 cut(s) 43, 217, 281, 433
AjnI CCWGG 2 cut(s) 123, 132
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 7 cut(s) 76, 130, 169, 187, 200, 298, 319
AluI AGCT 7 cut(s) 76, 130, 169, 187, 200, 298, 319
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 267, 394
AoxI GGCC 3 cut(s) 135, 204, 234
AspS9I GGNCC 2 cut(s) 136, 234
AsuC2I CCSGG 2 cut(s) 100, 118
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 195
BanII GRGCYC 2 cut(s) 111, 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 2 cut(s) 463, 486
BciT130I CCWGG 2 cut(s) 125, 134
BcnI CCSGG 2 cut(s) 100, 118
BcoDI GTCTC 2 cut(s) 267, 394
Bme1390I CCNGG 4 cut(s) 100, 118, 125, 134
BmgT120I GGNCC 2 cut(s) 136, 234
BmiI GGNNCC 2 cut(s) 110, 122
BmrFI CCNGG 4 cut(s) 100, 118, 125, 134
BmsI GCATC 2 cut(s) 26, 510
BpmI CTGGAG 2 cut(s) 95, 116
Bpu10I CCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 100, 118
Bsa29I ATCGAT 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 124, 145
BseBI CCWGG 2 cut(s) 125, 134
BseCI ATCGAT 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 105, 124, 145
BseMII CTCAG 2 cut(s) 179, 215
BseRI GAGGAG 3 cut(s) 20, 23, 158
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 3 cut(s) 137, 206, 236
BshVI ATCGAT 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 100, 118
BslI CCNNNNNNNGG 3 cut(s) 105, 124, 145
BsmAI GTCTC 2 cut(s) 267, 394
BsnI GGCC 3 cut(s) 137, 206, 236
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 2 cut(s) 111, 132
BspACI CCGC 2 cut(s) 139, 232
BspANI GGCC 3 cut(s) 137, 206, 236
BspCNI CTCAG 2 cut(s) 180, 214
BspDI ATCGAT 1 cut(s) 464
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 110, 122
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 125, 134
Bst4CI ACNGT 3 cut(s) 380, 419, 524
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 139, 234
BstDEI CTNAG 3 cut(s) 188, 201, 266
BstFNI CGCG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 267, 394
BstNI CCWGG 2 cut(s) 125, 134
BstSCI CCNGG 4 cut(s) 98, 116, 123, 132
BstUI CGCG 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 464
BsuRI GGCC 3 cut(s) 137, 206, 236
BsuTUI ATCGAT 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 139, 234
Cfr13I GGNCC 2 cut(s) 136, 234
ClaI ATCGAT 1 cut(s) 464
CviAII CATG 2 cut(s) 161, 287
DdeI CTNAG 3 cut(s) 188, 201, 266
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 111, 132
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 123, 132
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 2 cut(s) 111, 132
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 164, 290
FaiI YATR 5 cut(s) 162, 288, 363, 414, 483
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 2 cut(s) 160, 286
FauI CCCGC 2 cut(s) 146, 225
FriOI GRGCYC 2 cut(s) 111, 132
GsuI CTGGAG 2 cut(s) 95, 116
HaeIII GGCC 3 cut(s) 137, 206, 236
HapII CCGG 2 cut(s) 100, 118
Hin1II CATG 2 cut(s) 164, 290
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 9 cut(s) 32, 92, 150, 156, 192, 250, 260, 370, 454
HpaII CCGG 2 cut(s) 100, 118
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 7 cut(s) 22, 37, 155, 325, 375, 459, 509
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 64, 236
HpyCH4III ACNGT 3 cut(s) 380, 419, 524
HpyF3I CTNAG 3 cut(s) 188, 201, 266
Hsp92II CATG 2 cut(s) 164, 290
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 4 cut(s) 73, 114, 127, 135
LpnPI CCDG 8 cut(s) 110, 113, 119, 125, 131, 137, 146, 188
LweI GCATC 2 cut(s) 26, 510
MboII GAAGA 3 cut(s) 302, 305, 418
MhlI GDGCHC 2 cut(s) 111, 132
MluCI AATT 1 cut(s) 335
MlyI GAGTC 4 cut(s) 86, 165, 259, 269
MmeI TCCRAC 2 cut(s) 153, 237
MnlI CCTC 7 cut(s) 98, 136, 139, 169, 319, 348, 384
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 2 cut(s) 100, 118
MspR9I CCNGG 4 cut(s) 100, 118, 125, 134
MvaI CCWGG 2 cut(s) 125, 134
MvnI CGCG 1 cut(s) 141
NciI CCSGG 2 cut(s) 100, 118
NlaIII CATG 2 cut(s) 164, 290
NlaIV GGNNCC 2 cut(s) 110, 122
NspV TTCGAA 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 5 cut(s) 32, 150, 192, 370, 454
PfoI TCCNGGA 1 cut(s) 123
PleI GAGTC 4 cut(s) 86, 164, 258, 268
PpsI GAGTC 4 cut(s) 86, 164, 258, 268
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 123, 132
PspGI CCWGG 2 cut(s) 123, 132
PspN4I GGNNCC 2 cut(s) 110, 122
PspPI GGNCC 2 cut(s) 136, 234
PvuII CAGCTG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 136, 234
SchI GAGTC 4 cut(s) 86, 165, 259, 269
ScrFI CCNGG 4 cut(s) 100, 118, 125, 134
SduI GDGCHC 2 cut(s) 111, 132
SfaNI GCATC 2 cut(s) 26, 510
SfuI TTCGAA 1 cut(s) 195
Sse9I AATT 1 cut(s) 335
SsiI CCGC 2 cut(s) 139, 232
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 4 cut(s) 98, 116, 123, 132
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 380, 419, 524
TaqI TCGA 5 cut(s) 95, 195, 452, 464, 490
TasI AATT 1 cut(s) 335
TfiI GAWTC 5 cut(s) 32, 150, 192, 370, 454
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 234, 303, 503
TspRI CASTG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.