RchiOBHm_Chr3g0453091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000126
Physical Location & Seq
Forward (+)
3616926 .. 3629197
12272 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42020

Sequence Viewer

Length: 2634 bp
ATGGTTAGGGTGAATGATGATGTGAAGTTGAGAGTGGAGGAATTGAAGGGTTTAGAGGAGACGATTGCGAAATGTGATGAGGAGGTGAGGTTGAAGAAGGGGAGGATTAGTTTGATTCAGAAATCGATGATGCAATGCTCGTATGCGTTGGAAGCGAGGGAGGAGAAGATCAGGGAGAGTAATGTGGCCTTTGGTTTGGTGAAGAAGGCTATGGAGGAGTGGTGCTGTAAAGTTGAGATGAAGGAGAGGGAGCTAGAGGGGTGTGTGGCGAAACTGGAATTGAAAGAGGAAGAAGTGGAGAAGAAAATTGAGGAACTTGAGTTGATTGAGAAGAGGGTCAAGGATTGCCTGGATGATGTGGAGTTGAGAGTAGAGCATTTTGATTCGGTTGAAAAATCGATACAGGAAGAGAGACAGCAGTTGGATGCACTGCAAGAGGCGGTGCGTGAGGGCGAAAGGAATTTGGATTCAGTTCGAAAGGCAGCAGAGGAGCGTGAGAAGGTTTTGGACTCGGTAGGCCAGGGACTTGAAATGAAAGATAGGGAACTCGAAGAGCAGGCCAATGAGCTTGAGTTTAATGAGAGACTAGTTGAATTGAGAGTTGAGGAAGTTAATTCAAAGGATAAGAGGGTCAATGAACGCCTCAATGAGGTTCAAATGAAGGAAAATTTTTTGGAATTATTTGAAAAATCAATACAAGAGGACAAAGACCATTTGGATTTGGTCCAAAAGTTGGCAGCAGAGCGTGAAAAGCAGTCAGATTCACTCCAAACAACGGTGCTAGATCGTGAAAATAATTTGTTTTCACTTCAAAAATCGGTGCAAGAGCGTGAAAAAAAGTTGGATTCACTATCCGATGGACTTCAAAGGAGAGAAAGGGAACTTGAAAAGCAGGCCAAAGAGCTTGAATTGAAGCAGAAACAATTTGATTCTCAAAGGAAGGCTAAGCATTTGGAACCTACCCCTGCTGCTAAAAATGCTAGTGTTGTTTCATCTACAAGGGATCAATCCTGGATCAACATGGATGGTAGAAGCTTACAGTTGGTCATGAATGAGCAAGTGGAAAAAATTGACTTGACAGGTAGCCAAATGTCAGCTGTTCTACAAGCATCATCAGACCCGGCAAAATTGGTTTTGGATGCAATGGAAGGGTTTTATCCGTCAAATCTTACTGTCGAAAACAGAGAGTTTGAGTCACATTTGAGGGTCGTAAGAAAGAGTTGTATTCTTTTGCTACAGGAGTTAAAGAGAATGTCACCACTAATTAATCCTCAGGTGAGAGAAGAAGCAGTGAAATTGGCAGCTGATTGGAAAGAGAAGATGGCAGTTACCACTGATAATAGTTGGGAGGCTTTGGGCTTTTTGCGGCTTATCACTACGTATGAATTGACAAGTATTTATGATTTGAGGGAGCTTCGAAGTGTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCACAGATAAGGCACCTGGGACGAATGTTGTTTCTTCCATTGTCAAGACTGAGCGATCAGAATCTTCGCTGGCTAGAAATGAAGCAACTCTTTCTCCTTCGAATAAATATTTACAGAATGAAAGGATTAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGAGGGACCCAAAACTTTTGGGGCTAGATTTGCAGCAACTCTTTCTTCACCAAATAATGCTGAGGGACCAGAATCTTCTCTCTCTAGAAATGCAGCAACTCTATATTCACTGAATAATGCTTTACAGAAAAATCTGTTGGTCACTCTTAAATCATCATCAGACCCTGCAAAACTTGTGTTGGATTCGATGCAAGGGTCTTTGACGTATTACTGGAGAAATGGAGATGTTAGTTCCAAAGAAAAGGTTGTATCTGGAAATATTACTCTATTGAAGATTCTAATGGGACTATCAACACATGTTGGACCTCATCTGAAAGAAAATGCAACAAATCTAGCATCCCAGTGGAAAGAAAAGTTGAGTGCTGATACTGTAGATTCATCGGAGAGTTTGGGATATTTGCTGTTTATAGCTATGTATGGATTGCTTGGAACCTTACATGAAGATGAGATTGTAATGCTTCTTAGAAGGGTTTCGCAGCATAAGCGGTCTCTGGAGTTATGTCAGACACACGGTTTTGCAAATTATATCCCTGGTTTTATACAGAAGCTTATTGAAAGGAAACTACTGATGGTGGCTGTTAGATTTATTTGTGCCTTCAAATTATTTGACAAGCTCCCCCCAGTGCCACTCTTAAAAGAACATGTGGATGATGTAATGATGTGTTCCAAAGTAATTTGCAGGTCACAGATGATACCTGATGAAAAGGATAAGGCTCTGGATGGTAAAATATCTGATCTCAGAGCTGCCATTCAATGCATCAAAGATTACAACCTCGAGTCTGAATACCCGTCCAAGACTGTTGAATTGCAAATAGTTCAGCTTGAAATGCTCAAGGAAAAATGGAGAAGTTTGGAACCATCTCTGGTACCCAAAGTTGAACAAGAAGAGAGAAAAAGGAAGAAGCCTTGTACTAGGTCTTCTGCCCCAAAGTTACAACCACGAAAGGTGCCGAAAATAAAATTCGTCTTCAGTGGTTCGAGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida TEX13

Protein Analysis

877

Amino Acids

100.08

Weight (kDa)

5.87

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 336 - 510 3.4e-35 Frigida-like protein
Frigida PF07899 588 - 829 8.7e-51 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2316
Acc65I GGTACC 1 cut(s) 2512
AccB1I GGYRCC 3 cut(s) 1492, 2512, 2593
AccB7I CCANNNNNTGG 1 cut(s) 733
AciI CCGC 3 cut(s) 440, 1366, 2131
AclWI GGATC 2 cut(s) 1011, 1022
AcsI RAATTY 3 cut(s) 460, 667, 2606
AcuI CTGAAG 1 cut(s) 2599
AfaI GTAC 2 cut(s) 2514, 2557
AfiI CCNNNNNNNGG 3 cut(s) 649, 733, 775
AflIII ACRYGT 2 cut(s) 1942, 2287
AhlI ACTAGT 1 cut(s) 586
AjnI CCWGG 5 cut(s) 348, 519, 1010, 1495, 2176
AjuI GAANNNNNNNTTGG 2 cut(s) 1766, 1798
Alw26I GTCTC 5 cut(s) 53, 406, 577, 2139, 2620
AlwI GGATC 2 cut(s) 1011, 1022
AlwNI CAGNNNCTG 1 cut(s) 1811
Ama87I CYCGRG 1 cut(s) 2420
AoxI GGCC 4 cut(s) 186, 517, 558, 894
ApeKI GCWGC 9 cut(s) 482, 737, 968, 1301, 1454, 1679, 1739, 2122, 2390
ApoI RAATTY 3 cut(s) 460, 667, 2606
AseI ATTAAT 2 cut(s) 1266, 1608
Asp700I GAANNNNTTC 1 cut(s) 2116
Asp718I GGTACC 1 cut(s) 2512
AspS9I GGNCC 4 cut(s) 724, 1652, 1712, 1949
AsuC2I CCSGG 1 cut(s) 1121
AsuHPI GGTGA 6 cut(s) 22, 97, 211, 1248, 1288, 1686
AsuII TTCGAA 3 cut(s) 475, 1417, 1580
AvaI CYCGRG 1 cut(s) 2420
AvaII GGWCC 4 cut(s) 724, 1652, 1712, 1949
AxyI CCTNAGG 1 cut(s) 1272
BaeGI GKGCMC 1 cut(s) 1474
BanI GGYRCC 3 cut(s) 1492, 2512, 2593
BarI GAAGNNNNNNTAC 2 cut(s) 2548, 2580
BbsI GAAGAC 2 cut(s) 2556, 2605
BbvCI CCTCAGC 1 cut(s) 1707
BbvI GCAGC 9 cut(s) 494, 749, 955, 1313, 1441, 1691, 1751, 2134, 2377
BccI CCATC 6 cut(s) 851, 1019, 1315, 2209, 2360, 2512
BciT130I CCWGG 5 cut(s) 350, 521, 1012, 1497, 2178
BcnI CCSGG 1 cut(s) 1121
BcoDI GTCTC 5 cut(s) 53, 406, 577, 2139, 2620
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 9 cut(s) 254, 587, 782, 981, 1554, 1671, 1731, 1979, 2559
BfmI CTRYAG 2 cut(s) 1235, 2016
BfuAI ACCTGC 1 cut(s) 2316
BlpI GCTNAGC 1 cut(s) 945
Bme1390I CCNGG 6 cut(s) 350, 521, 1012, 1121, 1497, 2178
Bme18I GGWCC 4 cut(s) 724, 1652, 1712, 1949
BmeT110I CYCGRG 1 cut(s) 2420
BmgT120I GGNCC 4 cut(s) 724, 1652, 1712, 1949
BmiI GGNNCC 9 cut(s) 957, 1494, 1653, 1654, 1713, 2077, 2502, 2514, 2595
BmrFI CCNGG 6 cut(s) 350, 521, 1012, 1121, 1497, 2178
BmrI ACTGGG 2 cut(s) 1981, 2261
BmsI GCATC 7 cut(s) 120, 415, 1118, 1129, 1824, 1991, 2412
BmuI ACTGGG 2 cut(s) 1981, 2261
BpiI GAAGAC 2 cut(s) 2556, 2605
BpmI CTGGAG 2 cut(s) 1879, 2159
Bpu10I CCTNAGC 1 cut(s) 1707
Bpu1102I GCTNAGC 1 cut(s) 945
Bpu14I TTCGAA 3 cut(s) 475, 1417, 1580
BpuEI CTTGAG 3 cut(s) 338, 590, 2462
BpuMI CCSGG 1 cut(s) 1121
Bsa29I ATCGAT 2 cut(s) 125, 398
BsaAI YACGTR 1 cut(s) 1380
BsaBI GATNNNNATC 1 cut(s) 1540
BsaI GGTCTC 2 cut(s) 2139, 2620
BsaJI CCNNGG 3 cut(s) 520, 1496, 2176
BsaXI ACNNNNNCTCC 8 cut(s) 74, 94, 104, 124, 206, 236, 1558, 1588
Bsc4I CCNNNNNNNGG 3 cut(s) 649, 733, 775
Bse1I ACTGG 4 cut(s) 279, 1862, 1987, 2267
Bse21I CCTNAGG 1 cut(s) 1272
Bse3DI GCAATG 3 cut(s) 140, 1149, 1635
Bse8I GATNNNNATC 1 cut(s) 1540
BseBI CCWGG 5 cut(s) 350, 521, 1012, 1497, 2178
BseCI ATCGAT 2 cut(s) 125, 398
BseDI CCNNGG 3 cut(s) 520, 1496, 2176
BseGI GGATG 7 cut(s) 358, 430, 1030, 1144, 1982, 2299, 2371
BseJI GATNNNNATC 1 cut(s) 1540
BseLI CCNNNNNNNGG 3 cut(s) 649, 733, 775
BseMI GCAATG 3 cut(s) 140, 1149, 1635
BseMII CTCAG 6 cut(s) 1286, 1454, 1521, 1638, 1698, 2398
BseNI ACTGG 4 cut(s) 279, 1862, 1987, 2267
BseRI GAGGAG 5 cut(s) 71, 95, 176, 230, 503
BseSI GKGCMC 1 cut(s) 1474
BseXI GCAGC 9 cut(s) 494, 749, 955, 1313, 1441, 1691, 1751, 2134, 2377
BshFI GGCC 4 cut(s) 188, 519, 560, 896
BshNI GGYRCC 3 cut(s) 1492, 2512, 2593
BshVI ATCGAT 2 cut(s) 125, 398
BsiHKCI CYCGRG 1 cut(s) 2420
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 5 cut(s) 537, 1513, 1665, 1725, 1944
BslI CCNNNNNNNGG 3 cut(s) 649, 733, 775
BsmAI GTCTC 5 cut(s) 53, 406, 577, 2139, 2620
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 5 cut(s) 537, 1513, 1665, 1725, 1944
BsnI GGCC 4 cut(s) 188, 519, 560, 896
Bso31I GGTCTC 2 cut(s) 2139, 2620
BsoBI CYCGRG 1 cut(s) 2420
Bsp119I TTCGAA 3 cut(s) 475, 1417, 1580
Bsp1286I GDGCHC 1 cut(s) 1474
Bsp143I GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
Bsp1720I GCTNAGC 1 cut(s) 945
BspACI CCGC 3 cut(s) 440, 1366, 2131
BspANI GGCC 4 cut(s) 188, 519, 560, 896
BspCNI CTCAG 6 cut(s) 1285, 1453, 1522, 1639, 1699, 2397
BspDI ATCGAT 2 cut(s) 125, 398
BspHI TCATGA 1 cut(s) 1047
BspLI GGNNCC 9 cut(s) 957, 1494, 1653, 1654, 1713, 2077, 2502, 2514, 2595
BspMI ACCTGC 1 cut(s) 2316
BspPI GGATC 2 cut(s) 1011, 1022
BspQI GCTCTTC 1 cut(s) 546
BspT104I TTCGAA 3 cut(s) 475, 1417, 1580
BspT107I GGYRCC 3 cut(s) 1492, 2512, 2593
BspTNI GGTCTC 2 cut(s) 2139, 2620
BsrDI GCAATG 3 cut(s) 140, 1149, 1635
BsrI ACTGG 4 cut(s) 279, 1862, 1987, 2267
BssECI CCNNGG 3 cut(s) 520, 1496, 2176
BssMI GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
Bst2UI CCWGG 5 cut(s) 350, 521, 1012, 1497, 2178
Bst4CI ACNGT 6 cut(s) 778, 1041, 1174, 2017, 2159, 2446
Bst6I CTCTTC 5 cut(s) 326, 402, 546, 1632, 2526
BstBAI YACGTR 1 cut(s) 1380
BstBI TTCGAA 3 cut(s) 475, 1417, 1580
BstC8I GCNNGC 3 cut(s) 558, 894, 1551
BstDEI CTNAG 8 cut(s) 945, 1272, 1440, 1530, 1647, 1707, 2108, 2384
BstENI CCTNNNNNAGG 1 cut(s) 647
BstF5I GGATG 7 cut(s) 358, 430, 1030, 1144, 1982, 2299, 2371
BstKTI GATC 6 cut(s) 171, 787, 1006, 1017, 1538, 2383
BstMAI GTCTC 5 cut(s) 53, 406, 577, 2139, 2620
BstMBI GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
BstMWI GCNNNNNNNGC 6 cut(s) 152, 751, 977, 1676, 2128, 2473
BstNI CCWGG 5 cut(s) 350, 521, 1012, 1497, 2178
BstNSI RCATGY 2 cut(s) 1946, 2291
BstSCI CCNGG 6 cut(s) 348, 519, 1010, 1119, 1495, 2176
BstSFI CTRYAG 2 cut(s) 1235, 2016
BstSLI GKGCMC 1 cut(s) 1474
BstSNI TACGTA 1 cut(s) 1380
BstV1I GCAGC 9 cut(s) 494, 749, 955, 1313, 1441, 1691, 1751, 2134, 2377
BstV2I GAAGAC 2 cut(s) 2556, 2605
Bsu15I ATCGAT 2 cut(s) 125, 398
Bsu36I CCTNAGG 1 cut(s) 1272
BsuRI GGCC 4 cut(s) 188, 519, 560, 896
BsuTUI ATCGAT 2 cut(s) 125, 398
BtsCI GGATG 7 cut(s) 358, 430, 1030, 1144, 1982, 2299, 2371
BtsI GCAGTG 2 cut(s) 428, 1296
BtsIMutI CAGTG 7 cut(s) 428, 1296, 1332, 1754, 1994, 2274, 2623
BveI ACCTGC 1 cut(s) 2316
Cac8I GCNNGC 3 cut(s) 558, 894, 1551
CaiI CAGNNNCTG 1 cut(s) 1811
CciI TCATGA 1 cut(s) 1047
Cfr13I GGNCC 4 cut(s) 724, 1652, 1712, 1949
ClaI ATCGAT 2 cut(s) 125, 398
Csp6I GTAC 2 cut(s) 2513, 2556
CviAII CATG 5 cut(s) 1021, 1048, 1943, 2084, 2288
CviQI GTAC 2 cut(s) 2513, 2556
DdeI CTNAG 8 cut(s) 945, 1272, 1440, 1530, 1647, 1707, 2108, 2384
DpnI GATC 6 cut(s) 170, 786, 1005, 1016, 1537, 2382
DpnII GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
Eam1104I CTCTTC 5 cut(s) 326, 402, 546, 1632, 2526
EarI CTCTTC 5 cut(s) 326, 402, 546, 1632, 2526
Eco105I TACGTA 1 cut(s) 1380
Eco31I GGTCTC 2 cut(s) 2139, 2620
Eco47I GGWCC 4 cut(s) 724, 1652, 1712, 1949
Eco57I CTGAAG 1 cut(s) 2599
Eco81I CCTNAGG 1 cut(s) 1272
Eco88I CYCGRG 1 cut(s) 2420
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 1652
EcoRII CCWGG 5 cut(s) 348, 519, 1010, 1495, 2176
EcoT22I ATGCAT 1 cut(s) 2405
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 5 cut(s) 1024, 1051, 1946, 2087, 2291
FalI AAGNNNNNCTT 2 cut(s) 1554, 1586
FaqI GGGAC 5 cut(s) 537, 1513, 1665, 1725, 1944
FatI CATG 5 cut(s) 1020, 1047, 1942, 2083, 2287
FokI GGATG 7 cut(s) 365, 437, 1037, 1151, 1969, 2306, 2378
FspBI CTAG 9 cut(s) 254, 587, 782, 981, 1554, 1671, 1731, 1979, 2559
GsuI CTGGAG 2 cut(s) 1879, 2159
HaeIII GGCC 4 cut(s) 188, 519, 560, 896
HapII CCGG 1 cut(s) 1121
Hin1II CATG 5 cut(s) 1024, 1051, 1946, 2087, 2291
HindIII AAGCTT 2 cut(s) 1033, 2192
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 6 cut(s) 22, 97, 211, 1248, 1288, 1686
Hpy188III TCNNGA 8 cut(s) 788, 1048, 1525, 1731, 1899, 2138, 2363, 2625
HpyCH4III ACNGT 6 cut(s) 778, 1041, 1174, 2017, 2159, 2446
HpyCH4IV ACGT 2 cut(s) 1379, 1850
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 751, 977, 1676, 2128, 2473
HpyF3I CTNAG 8 cut(s) 945, 1272, 1440, 1530, 1647, 1707, 2108, 2384
HpySE526I ACGT 2 cut(s) 1379, 1850
Hsp92II CATG 5 cut(s) 1024, 1051, 1946, 2087, 2291
KflI GGGWCCC 1 cut(s) 1652
KpnI GGTACC 1 cut(s) 2516
Kzo9I GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 4 cut(s) 250, 490, 1411, 2265
Lsp1109I GCAGC 9 cut(s) 494, 749, 955, 1313, 1441, 1691, 1751, 2134, 2377
LweI GCATC 7 cut(s) 120, 415, 1118, 1129, 1824, 1991, 2412
MaeI CTAG 9 cut(s) 254, 587, 782, 981, 1554, 1671, 1731, 1979, 2559
MaeII ACGT 2 cut(s) 1379, 1850
MaeIII GTNAC 6 cut(s) 1194, 1254, 1327, 1786, 2328, 2577
MalI GATC 6 cut(s) 170, 786, 1005, 1016, 1537, 2382
MboI GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
MhlI GDGCHC 1 cut(s) 1474
MlyI GAGTC 3 cut(s) 503, 1202, 2432
MmeI TCCRAC 5 cut(s) 129, 402, 822, 1806, 1927
Mph1103I ATGCAT 1 cut(s) 2405
MroXI GAANNNNTTC 1 cut(s) 2116
MseI TTAA 9 cut(s) 576, 612, 1244, 1266, 1463, 1608, 1794, 2279, 2632
MslI CAYNNNNRTG 3 cut(s) 1987, 2088, 2292
MspA1I CMGCKG 2 cut(s) 1097, 1304
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 6 cut(s) 350, 521, 1012, 1121, 1497, 2178
MvaI CCWGG 5 cut(s) 350, 521, 1012, 1497, 2178
MwoI GCNNNNNNNGC 6 cut(s) 152, 751, 977, 1676, 2128, 2473
NciI CCSGG 1 cut(s) 1121
NdeII GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
NlaIII CATG 5 cut(s) 1024, 1051, 1946, 2087, 2291
NlaIV GGNNCC 9 cut(s) 957, 1494, 1653, 1654, 1713, 2077, 2502, 2514, 2595
NmuCI GTSAC 4 cut(s) 1194, 1254, 1786, 2328
NsiI ATGCAT 1 cut(s) 2405
NspI RCATGY 2 cut(s) 1946, 2291
NspV TTCGAA 3 cut(s) 475, 1417, 1580
PaeR7I CTCGAG 1 cut(s) 2420
PagI TCATGA 1 cut(s) 1047
PciI ACATGT 2 cut(s) 1942, 2287
PciSI GCTCTTC 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 2116
PflMI CCANNNNNTGG 1 cut(s) 733
PfoI TCCNGGA 1 cut(s) 1010
PleI GAGTC 3 cut(s) 503, 1201, 2431
PpsI GAGTC 3 cut(s) 503, 1201, 2431
Ppu21I YACGTR 1 cut(s) 1380
PpuMI RGGWCCY 1 cut(s) 1652
PscI ACATGT 2 cut(s) 1942, 2287
PshBI ATTAAT 2 cut(s) 1266, 1608
Psp5II RGGWCCY 1 cut(s) 1652
Psp6I CCWGG 5 cut(s) 348, 519, 1010, 1495, 2176
PspGI CCWGG 5 cut(s) 348, 519, 1010, 1495, 2176
PspN4I GGNNCC 9 cut(s) 957, 1494, 1653, 1654, 1713, 2077, 2502, 2514, 2595
PspPI GGNCC 4 cut(s) 724, 1652, 1712, 1949
PspPPI RGGWCCY 1 cut(s) 1652
PspXI VCTCGAGB 1 cut(s) 2420
PstNI CAGNNNCTG 1 cut(s) 1811
PvuII CAGCTG 2 cut(s) 1097, 1304
RsaI GTAC 2 cut(s) 2514, 2557
RsaNI GTAC 2 cut(s) 2513, 2556
RseI CAYNNNNRTG 3 cut(s) 1987, 2088, 2292
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 9 cut(s) 576, 612, 1244, 1266, 1463, 1608, 1794, 2279, 2632
Sau3AI GATC 6 cut(s) 168, 784, 1003, 1014, 1535, 2380
Sau96I GGNCC 4 cut(s) 724, 1652, 1712, 1949
SchI GAGTC 3 cut(s) 503, 1202, 2432
ScrFI CCNGG 6 cut(s) 350, 521, 1012, 1121, 1497, 2178
SduI GDGCHC 1 cut(s) 1474
SfaNI GCATC 7 cut(s) 120, 415, 1118, 1129, 1824, 1991, 2412
SfcI CTRYAG 2 cut(s) 1235, 2016
Sfr274I CTCGAG 1 cut(s) 2420
SfuI TTCGAA 3 cut(s) 475, 1417, 1580
SinI GGWCC 4 cut(s) 724, 1652, 1712, 1949
SlaI CTCGAG 1 cut(s) 2420
SmiMI CAYNNNNRTG 3 cut(s) 1987, 2088, 2292
SmlI CTYRAG 4 cut(s) 317, 569, 2420, 2477
SmoI CTYRAG 4 cut(s) 317, 569, 2420, 2477
SnaBI TACGTA 1 cut(s) 1380
SpeI ACTAGT 1 cut(s) 586
SsiI CCGC 3 cut(s) 440, 1366, 2131
SspI AATATT 2 cut(s) 1589, 1906
SspMI CTAG 9 cut(s) 254, 587, 782, 981, 1554, 1671, 1731, 1979, 2559
StyD4I CCNGG 6 cut(s) 348, 519, 1010, 1119, 1495, 2176
TaaI ACNGT 6 cut(s) 778, 1041, 1174, 2017, 2159, 2446
TaiI ACGT 2 cut(s) 1382, 1853
TatI WGTACW 1 cut(s) 2555
TauI GCSGC 1 cut(s) 1369
Tru1I TTAA 9 cut(s) 576, 612, 1244, 1266, 1463, 1608, 1794, 2279, 2632
Tru9I TTAA 9 cut(s) 576, 612, 1244, 1266, 1463, 1608, 1794, 2279, 2632
TscAI CASTG 7 cut(s) 435, 1296, 1339, 1761, 1994, 2274, 2623
TseFI GTSAC 4 cut(s) 1194, 1254, 1786, 2328
TseI GCWGC 9 cut(s) 482, 737, 968, 1301, 1454, 1679, 1739, 2122, 2390
Tsp45I GTSAC 4 cut(s) 1194, 1254, 1786, 2328
TspGWI ACGGA 1 cut(s) 1149
TspRI CASTG 7 cut(s) 435, 1296, 1339, 1761, 1994, 2274, 2623
Van91I CCANNNNNTGG 1 cut(s) 733
VpaK11BI GGWCC 4 cut(s) 724, 1652, 1712, 1949
VspI ATTAAT 2 cut(s) 1266, 1608
XagI CCTNNNNNAGG 1 cut(s) 647
XapI RAATTY 3 cut(s) 460, 667, 2606
XbaI TCTAGA 1 cut(s) 1730
XceI RCATGY 2 cut(s) 1946, 2291
XhoI CTCGAG 1 cut(s) 2420
XmnI GAANNNNTTC 1 cut(s) 2116
XspI CTAG 9 cut(s) 254, 587, 782, 981, 1554, 1671, 1731, 1979, 2559
Zsp2I ATGCAT 1 cut(s) 2405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.