Prupe.6G334600_v2.0.a1

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000126
Physical Location & Seq
Reverse (-)
29070846 .. 29076816
5971 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G334600.1

Sequence Viewer

Length: 3378 bp
ATGGAGAAGATAGCCTCGGATTTGAAAATGTCTGAGACGAAGCAGAGCTGTCTCGGCCAGGCCTACGAAGCCTTGCATGCCCAAGCTTCATCCATCCTCCACTTTGGTGTGCAGTGGAAGGAGCTTGAGGACCACTTTGAGTCGACCCGGAACTCGCTCCAGACCCGACTCCGAGAACTCGAGAACCGCGAGAAGAAAATTGACGACCGAGAGAAGCGTTTGGGAGCCTTAGAGTTGAATTTTGACTCGGAGATGGCGTCCAAAGCCGAGAAGTTGCGTGGAGTTGAGAAATCGATCGAAGAGGTTGAATCAGGTAAACACCACTTCAATTTGCAATCGCTTAAGCTACTGATTGAAGAGCATAATGAAGAGCTTGATGTTAAAGAGAAGCGATTCTCAGAACTTCAGAGATTGGTTGGAGAGAAAGAGAGGGAGTGTGATTTAATTGATAAACGTGTTAAAGAGCGCACAAAGAAATTGAATTGGGTTATGAAATGTGTAGAAGAGAGGTCCAGAGAGGTTGAGTCTAAGAAGGGGGAAGTGGAAGTGGTTCAGGGGGTATTGAACAAGTGCAGAGAGGATATTGAGTTGCAAGAGAGGCAATTAAATTGGATGATGGGAATGATTGAGGAGCGCCAGAAAGTATATAATTTGAGAGAAGAGCAAATTAACGCAGCTCAAATATATATTGAAGAATGTGACGATAAGATGAAATTGAAAATGGAGGAACTTCGTTTGGTTCAGAGATCATTGGAGGAATGCTCTAATACTTTGGAATCCAAAGAGAACATAATTAGGGAAATGGAGTTGAAATTGAGAGATTTTTATTTGCTTAAGAAATCAATGGAGGAGTGGTCCAGTGAACTTGAATTTAAAGAGAGGGAACTTGAAGGATGGTTTGAGAAGCTTGAACTGAAAGAGAAACAATTTGAGCCACAACTCGAGGAACTCCATTTGATGGATAAGAGGATCAATGAATGCCTCAATGAGGTTCAGTTGCAAGAGAAACATTTAGATTCACTCCAAAAATCGATACAGGAACGTGAAAAGAATTTGGATTCACTCTCCTATGGACTTAAATTGAAAGAGAGGCAACTTGAACAACTGGCCAAAGAGCTTGAATTGAAGCAGAAAGAAGTTGATTGGATTCGAAAATCCACTGAAACTAATACCAAAAAAATGAGATTGAAGAAGAAGACTAATATCCTTGATTCTCAAGCGAAGATTGAGCAATTGGAACATACTCCTGGTAACAATGCCACTGTTCCTTTTTCCAAAAGTATCCAGTCCCGCATCTACAGGAATGGTAGAGACTTGCAGTTGTTCCTGAATGAGCACTTGAAGAGTCATGATTTATTGGGTACCGAAATCTCAGCAATTCTTCAAGCGTCATCAGACCCAGCCAAATTAGTTTTGGATGCAATGCAAGGGTTTTACCCTTCAAATTCGGTTGTGGAAAACTGGGAGTGTGACTTTGATTTGAGCGTTATTAGAAGGAGTTGTATTCTTCTGTTACAAGAGTTAAAGAGAGTCTCACCACAAATTAATCCTCAGGTGAGAGGAGAATCAAAGAAGTTGGCAGGCAATTGGAAGGATAGGATGATTGTGGTGGTAGAAAATTGGTTAGAGGTTTTGGGATTTTTATTGCTTCTTACTACATATGACTTGACCTCTACTTATGATGAGAATGAGCTTCAAAGTCTTCTTGTTGTAGTTTCTCAGCATTCACTGGCTACTGAATTAAGACAGGCCCTTGGTATATCAGAGAGCAGCATAATTAGTTCCCCAGTCAAAATTGGTGAACCCATATCTTCACTGGCCAAAAATGGAGCAACTTGTTCTCTGAATCTTCAACCAGGTGCCGCCACAGATGCAAGGAACTTGCAGGGGTTTTTAAATGAGCATTTAAATGGAAATCATTCAATACAAAAGGAAATGTCGGCTGCCCTTCAAACGTCATCGGACCCAGCAAAACTTGTGTTGGATGAGATTCAAACATCTTTTGCTCAATACTGGAGAAAAGGAGATGTTGGTTTCGATGAAACTTTCATGTTTAGTAACATTGCCCTATTGGAGGAGCTAATGAGGGTCTCACGGCATGTTGGACCTCATTTGAAAGAAGATGCAATAAAGCTAGCAGAGCAGTGGAAAGCAAAAATGAGAGCTGACACTCAAAATTCATTGGAGAGTTTGGGATTCTTGCAGTTTGTAGCCACATATGGGTTGCTCCCTACTTTGAATGGAGATGAGATTAAAAAGCTTCTTGGGATGATTTATCAGCATAAACAGGCTCTAGAATTATGTCTTACGCTTGGTTTTGCAGATAAGATCCCTGATTTTATTCAGAATCTTATTGAAAGGAAGCAACTGTTTGAGGCTTTTAGGTTTATTTGCACCTTCAAGGTAAATGACAAGTTCTCCTCGGTACCACTCTTAAAAGAATATGTGGAAGGTGCAAGGAAGTCTTACAGGACAACTTGGAGGAAAAAGAAATCACTTGATGGAAAGAATGAGGTTGTAGACCACCAAATAGCTGATCTAAGAGCTGTGATTCAATGCATCGAAGATTACCACCTCGATTCTGAATACCCATCCAAGGACATCGAAATACAAATAGTTCAGCTGGAGAAAATGAAGGAGAATTGGAGAAAAATGGCGAAATCTCTTGGCTCTAAGGCTGAACAAGAGGAGAAATCTCTTGGCTTTAAGGCTGAACAAGAGGAGAAATCTCTTGGCTCCAAGGATGGTCAAGGGGAGAGATCTCTTGCCGCCACCCAGGTTGAACAAGAGGACAAACCTCTTGCCTCTAAGGAGAAGAAACCTAGTATCAGCACTTCTGTCTCCAAGGTTGAACAAGAGGATAAATCTCTGGCCTCCCAGGAGAAGAAACCTAGTACCAGCAATTCTGTCTCCAAGGTTGAACAAGAGGATAAATCTCTTGCTTCCCAGCAGAAGAAATGTAGTTCTATAATTTCTGCCTCCAAGGTTGAACAAGAGGATAAATCTCTTGCCTCCCAGAAGAAGAAACGCAGCACCAGAACTTCTGCCTCCAAGGCCGATCAAGAGGAGAAAAAAGAGAAGAAATGCAGCGCCAGCACTCCTGCTGCCTCCAAGGCCGAACAAGAGGAGAAAAAAGAGAAGAAATGCAGCACCAGCACTTCTTCTGCCTCCAAGGTTGAACAAGAGGAGAAAAAAGAGAAGAAACGCAGCACCAGCAGTTGTTCCTCCTCCAAGTTTGAACAGAGACAACAGAGTAAATATAAACGTCCTCGGACATCTGCTACACCCTATGCATTGCCAACTTTCCCTCGTGGCTATCTGCAGCCAAGTTCGTCCTTATTGCCGAAAGGAAATTATGGACACCATGGACATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

1126

Amino Acids

129.34

Weight (kDa)

6.6

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1361, 2425
AccB1I GGYRCC 3 cut(s) 1361, 1859, 2425
AccB7I CCANNNNNTGG 1 cut(s) 958
AccI GTMKAC 2 cut(s) 143, 2520
AccII CGCG 1 cut(s) 189
AciI CCGC 4 cut(s) 187, 1291, 1863, 2769
AclWI GGATC 2 cut(s) 977, 2323
AcoI YGGCCR 3 cut(s) 55, 1107, 1818
AcsI RAATTY 5 cut(s) 238, 869, 1051, 1444, 2176
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 3 cut(s) 1363, 2427, 2896
AfiI CCNNNNNNNGG 5 cut(s) 958, 988, 2074, 2220, 2596
AflII CTTAAG 2 cut(s) 341, 833
AflIII ACRYGT 1 cut(s) 454
AjnI CCWGG 5 cut(s) 57, 1246, 1855, 2775, 2877
AleI CACNNNNGTG 1 cut(s) 105
Alw21I GWGCWC 1 cut(s) 1338
Alw26I GTCTC 8 cut(s) 29, 56, 1305, 1537, 2095, 2845, 2914, 3238
AlwI GGATC 2 cut(s) 977, 2323
Ama87I CYCGRG 2 cut(s) 179, 941
AoxI GGCC 8 cut(s) 55, 60, 1107, 1749, 1818, 2871, 3054, 3114
ApeKI GCWGC 9 cut(s) 674, 1770, 1943, 3030, 3087, 3104, 3147, 3207, 3322
ApoI RAATTY 5 cut(s) 238, 869, 1051, 1444, 2176
AseI ATTAAT 1 cut(s) 1545
Asp700I GAANNNNTTC 3 cut(s) 392, 549, 1918
Asp718I GGTACC 2 cut(s) 1361, 2425
AspLEI GCGC 3 cut(s) 468, 636, 3092
AspS9I GGNCC 6 cut(s) 130, 510, 855, 1750, 1963, 2105
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 1527, 1567, 1811
AsuII TTCGAA 1 cut(s) 1150
AsuNHI GCTAGC 1 cut(s) 2134
AvaI CYCGRG 2 cut(s) 179, 941
AvaII GGWCC 5 cut(s) 130, 510, 855, 1963, 2105
AxyI CCTNAGG 1 cut(s) 1551
BalI TGGCCA 2 cut(s) 1109, 1820
BanI GGYRCC 3 cut(s) 1361, 1859, 2425
BarI GAAGNNNNNNTAC 2 cut(s) 2818, 2850
BauI CACGAG 1 cut(s) 3309
BbsI GAAGAC 2 cut(s) 1202, 1694
Bbv12I GWGCWC 1 cut(s) 1338
BbvI GCAGC 9 cut(s) 686, 1782, 1930, 3042, 3091, 3099, 3159, 3219, 3334
BccI CCATC 8 cut(s) 101, 247, 610, 888, 952, 2495, 2599, 2738
BceAI ACGGC 1 cut(s) 2111
BciT130I CCWGG 5 cut(s) 59, 1248, 1857, 2777, 2879
BciVI GTATCC 1 cut(s) 1292
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 8 cut(s) 29, 56, 1305, 1537, 2095, 2845, 2914, 3238
BfaI CTAG 4 cut(s) 2135, 2294, 2823, 2892
BfmI CTRYAG 2 cut(s) 1297, 3320
BfoI RGCGCY 2 cut(s) 637, 3093
BfrI CTTAAG 2 cut(s) 341, 833
BfuI GTATCC 1 cut(s) 1292
BglI GCCNNNNNGGC 2 cut(s) 3053, 3113
BglII AGATCT 1 cut(s) 2759
Bme1390I CCNGG 6 cut(s) 59, 148, 1248, 1857, 2777, 2879
Bme18I GGWCC 5 cut(s) 130, 510, 855, 1963, 2105
BmeT110I CYCGRG 2 cut(s) 179, 941
BmgT120I GGNCC 6 cut(s) 130, 510, 855, 1750, 1963, 2105
BmiI GGNNCC 6 cut(s) 226, 1363, 1861, 1965, 2427, 2737
BmrFI CCNGG 6 cut(s) 59, 148, 1248, 1857, 2777, 2879
BmrI ACTGGG 2 cut(s) 1471, 1781
BmsI GCATC 5 cut(s) 1302, 1408, 1861, 2113, 2568
BmtI GCTAGC 1 cut(s) 2138
BmuI ACTGGG 2 cut(s) 1471, 1781
BpiI GAAGAC 2 cut(s) 1202, 1694
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BpmI CTGGAG 3 cut(s) 143, 2035, 2645
Bpu14I TTCGAA 1 cut(s) 1150
BpuEI CTTGAG 2 cut(s) 146, 1200
BpuMI CCSGG 1 cut(s) 148
Bsa29I ATCGAT 2 cut(s) 293, 1031
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 2095
BsaXI ACNNNNNCTCC 6 cut(s) 242, 272, 839, 869, 2402, 2432
Bsc4I CCNNNNNNNGG 5 cut(s) 958, 988, 2074, 2220, 2596
Bse1I ACTGG 8 cut(s) 858, 1110, 1285, 1466, 1734, 1787, 1821, 2018
Bse21I CCTNAGG 1 cut(s) 1551
Bse3DI GCAATG 3 cut(s) 1428, 2061, 3293
BseBI CCWGG 5 cut(s) 59, 1248, 1857, 2777, 2879
BseCI ATCGAT 2 cut(s) 293, 1031
BseLI CCNNNNNNNGG 5 cut(s) 958, 988, 2074, 2220, 2596
BseMI GCAATG 3 cut(s) 1428, 2061, 3293
BseMII CTCAG 5 cut(s) 24, 411, 1386, 1565, 1733
BseNI ACTGG 8 cut(s) 858, 1110, 1285, 1466, 1734, 1787, 1821, 2018
BseXI GCAGC 9 cut(s) 686, 1782, 1930, 3042, 3091, 3099, 3159, 3219, 3334
BseYI CCCAGC 3 cut(s) 1399, 1966, 2946
BsgI GTGCAG 2 cut(s) 131, 592
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 2 cut(s) 208, 297
BshFI GGCC 8 cut(s) 57, 62, 1109, 1751, 1820, 2873, 3056, 3116
BshNI GGYRCC 3 cut(s) 1361, 1859, 2425
BshVI ATCGAT 2 cut(s) 293, 1031
BsiEI CGRYCG 2 cut(s) 208, 297
BsiHKAI GWGCWC 1 cut(s) 1338
BsiHKCI CYCGRG 2 cut(s) 179, 941
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 1273
BslI CCNNNNNNNGG 5 cut(s) 958, 988, 2074, 2220, 2596
BsmAI GTCTC 8 cut(s) 29, 56, 1305, 1537, 2095, 2845, 2914, 3238
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 1273
BsmI GAATGC 3 cut(s) 764, 983, 1723
BsnI GGCC 8 cut(s) 57, 62, 1109, 1751, 1820, 2873, 3056, 3116
Bso31I GGTCTC 1 cut(s) 2095
BsoBI CYCGRG 2 cut(s) 179, 941
Bsp119I TTCGAA 1 cut(s) 1150
Bsp1286I GDGCHC 1 cut(s) 1338
Bsp143I GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
Bsp19I CCATGG 1 cut(s) 3364
BspACI CCGC 4 cut(s) 187, 1291, 1863, 2769
BspANI GGCC 8 cut(s) 57, 62, 1109, 1751, 1820, 2873, 3056, 3116
BspCNI CTCAG 5 cut(s) 25, 410, 1385, 1564, 1732
BspDI ATCGAT 2 cut(s) 293, 1031
BspFNI CGCG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 1348
BspLI GGNNCC 6 cut(s) 226, 1363, 1861, 1965, 2427, 2737
BspMAI CTGCAG 1 cut(s) 3324
BspOI GCTAGC 1 cut(s) 2138
BspPI GGATC 2 cut(s) 977, 2323
BspQI GCTCTTC 3 cut(s) 351, 363, 654
BspT104I TTCGAA 1 cut(s) 1150
BspT107I GGYRCC 3 cut(s) 1361, 1859, 2425
BspTI CTTAAG 2 cut(s) 341, 833
BspTNI GGTCTC 1 cut(s) 2095
BsrDI GCAATG 3 cut(s) 1428, 2061, 3293
BsrI ACTGG 8 cut(s) 858, 1110, 1285, 1466, 1734, 1787, 1821, 2018
BssMI GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 3309
Bst2BI CACGAG 1 cut(s) 3309
Bst2UI CCWGG 5 cut(s) 59, 1248, 1857, 2777, 2879
Bst4CI ACNGT 2 cut(s) 1264, 2370
Bst6I CTCTTC 6 cut(s) 294, 351, 363, 498, 654, 1337
BstACI GRCGYC 1 cut(s) 257
BstAFI CTTAAG 2 cut(s) 341, 833
BstBI TTCGAA 1 cut(s) 1150
BstC8I GCNNGC 4 cut(s) 78, 1582, 2136, 3094
BstDSI CCRYGG 1 cut(s) 3364
BstENI CCTNNNNNAGG 2 cut(s) 986, 2072
BstFNI CGCG 1 cut(s) 189
BstH2I RGCGCY 2 cut(s) 637, 3093
BstHHI GCGC 3 cut(s) 468, 636, 3092
BstKTI GATC 7 cut(s) 297, 749, 972, 2331, 2539, 2762, 3061
BstMAI GTCTC 8 cut(s) 29, 56, 1305, 1537, 2095, 2845, 2914, 3238
BstMBI GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
BstMCI CGRYCG 2 cut(s) 208, 297
BstNI CCWGG 5 cut(s) 59, 1248, 1857, 2777, 2879
BstNSI RCATGY 2 cut(s) 80, 2102
BstSCI CCNGG 6 cut(s) 57, 146, 1246, 1855, 2775, 2877
BstSFI CTRYAG 2 cut(s) 1297, 3320
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 9 cut(s) 686, 1782, 1930, 3042, 3091, 3099, 3159, 3219, 3334
BstV2I GAAGAC 2 cut(s) 1202, 1694
BstX2I RGATCY 2 cut(s) 2328, 2759
BstYI RGATCY 2 cut(s) 2328, 2759
Bsu15I ATCGAT 2 cut(s) 293, 1031
Bsu36I CCTNAGG 1 cut(s) 1551
BsuI GTATCC 1 cut(s) 1292
BsuRI GGCC 8 cut(s) 57, 62, 1109, 1751, 1820, 2873, 3056, 3116
BsuTUI ATCGAT 2 cut(s) 293, 1031
BtgI CCRYGG 1 cut(s) 3364
BtsI GCAGTG 2 cut(s) 119, 2150
BtsIMutI CAGTG 7 cut(s) 119, 865, 1158, 1260, 1727, 1814, 2150
Cac8I GCNNGC 4 cut(s) 78, 1582, 2136, 3094
CciI TCATGA 1 cut(s) 1348
CfoI GCGC 3 cut(s) 468, 636, 3092
Cfr13I GGNCC 6 cut(s) 130, 510, 855, 1750, 1963, 2105
ClaI ATCGAT 2 cut(s) 293, 1031
CseI GACGC 2 cut(s) 246, 1377
CsiI ACCWGGT 1 cut(s) 1855
Csp6I GTAC 3 cut(s) 1362, 2426, 2895
CspCI CAANNNNNGTGG 2 cut(s) 2761, 2796
CviAII CATG 5 cut(s) 77, 1349, 2050, 2099, 3365
CviQI GTAC 3 cut(s) 1362, 2426, 2895
DpnI GATC 7 cut(s) 296, 748, 971, 2330, 2538, 2761, 3060
DpnII GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
DraI TTTAAA 3 cut(s) 874, 1896, 1908
EaeI YGGCCR 3 cut(s) 55, 1107, 1818
Eam1104I CTCTTC 6 cut(s) 294, 351, 363, 498, 654, 1337
EarI CTCTTC 6 cut(s) 294, 351, 363, 498, 654, 1337
Eco147I AGGCCT 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 2095
Eco47I GGWCC 5 cut(s) 130, 510, 855, 1963, 2105
Eco57I CTGAAG 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 1551
Eco88I CYCGRG 2 cut(s) 179, 941
EcoNI CCTNNNNNAGG 2 cut(s) 986, 2072
EcoO109I RGGNCCY 1 cut(s) 1750
EcoRII CCWGG 5 cut(s) 57, 1246, 1855, 2775, 2877
EcoT22I ATGCAT 2 cut(s) 2561, 3295
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 5 cut(s) 80, 1352, 2053, 2102, 3368
FalI AAGNNNNNCTT 2 cut(s) 2449, 2481
FaqI GGGAC 1 cut(s) 1273
FatI CATG 5 cut(s) 76, 1348, 2049, 2098, 3364
FauI CCCGC 1 cut(s) 1298
FauNDI CATATG 2 cut(s) 1660, 2218
FblI GTMKAC 2 cut(s) 143, 2520
FspBI CTAG 4 cut(s) 2135, 2294, 2823, 2892
GlaI GCGC 3 cut(s) 467, 635, 3091
GsaI CCCAGC 3 cut(s) 1403, 1970, 2950
GsuI CTGGAG 3 cut(s) 143, 2035, 2645
HaeII RGCGCY 2 cut(s) 637, 3093
HaeIII GGCC 8 cut(s) 57, 62, 1109, 1751, 1820, 2873, 3056, 3116
HapII CCGG 1 cut(s) 148
HgaI GACGC 2 cut(s) 246, 1377
HhaI GCGC 3 cut(s) 468, 636, 3092
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 5 cut(s) 80, 1352, 2053, 2102, 3368
Hin6I GCGC 3 cut(s) 466, 634, 3090
HinP1I GCGC 3 cut(s) 466, 634, 3090
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 3 cut(s) 84, 905, 2258
HpaII CCGG 1 cut(s) 148
HphI GGTGA 3 cut(s) 1527, 1567, 1811
Hpy166II GTNNAC 5 cut(s) 144, 317, 863, 1802, 2521
Hpy188III TCNNGA 7 cut(s) 160, 181, 513, 1327, 1349, 2294, 3062
Hpy8I GTNNAC 5 cut(s) 144, 317, 863, 1802, 2521
HpyCH4III ACNGT 2 cut(s) 1264, 2370
HpyCH4IV ACGT 4 cut(s) 454, 1042, 1955, 3265
HpySE526I ACGT 4 cut(s) 454, 1042, 1955, 3265
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 5 cut(s) 80, 1352, 2053, 2102, 3368
HspAI GCGC 3 cut(s) 466, 634, 3090
KpnI GGTACC 2 cut(s) 1365, 2429
Kzo9I GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
LguI GCTCTTC 3 cut(s) 351, 363, 654
LmnI GCTCC 8 cut(s) 121, 162, 224, 631, 1829, 2077, 2232, 2741
Lsp1109I GCAGC 9 cut(s) 686, 1782, 1930, 3042, 3091, 3099, 3159, 3219, 3334
LweI GCATC 5 cut(s) 1302, 1408, 1861, 2113, 2568
MabI ACCWGGT 1 cut(s) 1855
MaeI CTAG 4 cut(s) 2135, 2294, 2823, 2892
MaeII ACGT 4 cut(s) 454, 1042, 1955, 3265
MaeIII GTNAC 5 cut(s) 698, 1250, 1469, 1512, 2057
MalI GATC 7 cut(s) 296, 748, 971, 2330, 2538, 2761, 3060
MboI GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
MfeI CAATTG 2 cut(s) 1232, 1585
MflI RGATCY 2 cut(s) 2328, 2759
MhlI GDGCHC 1 cut(s) 1338
MlsI TGGCCA 2 cut(s) 1109, 1820
MluNI TGGCCA 2 cut(s) 1109, 1820
MlyI GAGTC 6 cut(s) 149, 162, 239, 533, 1354, 1539
MmeI TCCRAC 3 cut(s) 397, 1962, 2083
Mox20I TGGCCA 2 cut(s) 1109, 1820
Mph1103I ATGCAT 2 cut(s) 2561, 3295
MroXI GAANNNNTTC 3 cut(s) 392, 549, 1918
MscI TGGCCA 2 cut(s) 1109, 1820
MslI CAYNNNNRTG 2 cut(s) 105, 1908
Msp20I TGGCCA 2 cut(s) 1109, 1820
MspA1I CMGCKG 1 cut(s) 2623
MspCI CTTAAG 2 cut(s) 341, 833
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 6 cut(s) 59, 148, 1248, 1857, 2777, 2879
MunI CAATTG 2 cut(s) 1232, 1585
Mva1269I GAATGC 3 cut(s) 764, 983, 1723
MvaI CCWGG 5 cut(s) 59, 1248, 1857, 2777, 2879
MvnI CGCG 1 cut(s) 189
NciI CCSGG 1 cut(s) 148
NcoI CCATGG 1 cut(s) 3364
NdeI CATATG 2 cut(s) 1660, 2218
NdeII GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
NheI GCTAGC 1 cut(s) 2134
NlaIII CATG 5 cut(s) 80, 1352, 2053, 2102, 3368
NlaIV GGNNCC 6 cut(s) 226, 1363, 1861, 1965, 2427, 2737
NmeAIII GCCGAG 2 cut(s) 33, 292
NmuCI GTSAC 2 cut(s) 698, 1469
NsiI ATGCAT 2 cut(s) 2561, 3295
NspI RCATGY 2 cut(s) 80, 2102
NspV TTCGAA 1 cut(s) 1150
OliI CACNNNNGTG 1 cut(s) 105
PaeI GCATGC 1 cut(s) 80
PaeR7I CTCGAG 2 cut(s) 179, 941
PagI TCATGA 1 cut(s) 1348
PceI AGGCCT 1 cut(s) 62
PciSI GCTCTTC 3 cut(s) 351, 363, 654
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 254
PctI GAATGC 3 cut(s) 764, 983, 1723
PdmI GAANNNNTTC 3 cut(s) 392, 549, 1918
PflMI CCANNNNNTGG 1 cut(s) 958
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 6 cut(s) 148, 162, 239, 532, 1353, 1538
PpsI GAGTC 6 cut(s) 148, 162, 239, 532, 1353, 1538
PshBI ATTAAT 1 cut(s) 1545
Psp6I CCWGG 5 cut(s) 57, 1246, 1855, 2775, 2877
PspFI CCCAGC 3 cut(s) 1399, 1966, 2946
PspGI CCWGG 5 cut(s) 57, 1246, 1855, 2775, 2877
PspN4I GGNNCC 6 cut(s) 226, 1363, 1861, 1965, 2427, 2737
PspPI GGNCC 6 cut(s) 130, 510, 855, 1750, 1963, 2105
PspXI VCTCGAGB 1 cut(s) 941
PstI CTGCAG 1 cut(s) 3324
PsuI RGATCY 2 cut(s) 2328, 2759
PvuI CGATCG 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 2623
RsaI GTAC 3 cut(s) 1363, 2427, 2896
RsaNI GTAC 3 cut(s) 1362, 2426, 2895
RseI CAYNNNNRTG 2 cut(s) 105, 1908
SalI GTCGAC 1 cut(s) 142
SapI GCTCTTC 3 cut(s) 351, 363, 654
Sau3AI GATC 7 cut(s) 294, 746, 969, 2328, 2536, 2759, 3058
Sau96I GGNCC 6 cut(s) 130, 510, 855, 1750, 1963, 2105
SchI GAGTC 6 cut(s) 149, 162, 239, 533, 1354, 1539
ScrFI CCNGG 6 cut(s) 59, 148, 1248, 1857, 2777, 2879
SduI GDGCHC 1 cut(s) 1338
SexAI ACCWGGT 1 cut(s) 1855
SfaNI GCATC 5 cut(s) 1302, 1408, 1861, 2113, 2568
SfcI CTRYAG 2 cut(s) 1297, 3320
Sfr274I CTCGAG 2 cut(s) 179, 941
SfuI TTCGAA 1 cut(s) 1150
SinI GGWCC 5 cut(s) 130, 510, 855, 1963, 2105
SlaI CTCGAG 2 cut(s) 179, 941
SmiI ATTTAAAT 1 cut(s) 1908
SmiMI CAYNNNNRTG 2 cut(s) 105, 1908
SmlI CTYRAG 6 cut(s) 125, 179, 341, 833, 941, 1215
SmoI CTYRAG 6 cut(s) 125, 179, 341, 833, 941, 1215
SphI GCATGC 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 4 cut(s) 187, 1291, 1863, 2769
SspMI CTAG 4 cut(s) 2135, 2294, 2823, 2892
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 6 cut(s) 57, 146, 1246, 1855, 2775, 2877
SwaI ATTTAAAT 1 cut(s) 1908
TaaI ACNGT 2 cut(s) 1264, 2370
TaiI ACGT 4 cut(s) 457, 1045, 1958, 3268
TaqII GACCGA 1 cut(s) 222
TauI GCSGC 2 cut(s) 1865, 2771
TscAI CASTG 7 cut(s) 119, 865, 1165, 1267, 1734, 1821, 2150
TseFI GTSAC 2 cut(s) 698, 1469
TseI GCWGC 9 cut(s) 674, 1770, 1943, 3030, 3087, 3104, 3147, 3207, 3322
Tsp45I GTSAC 2 cut(s) 698, 1469
TspDTI ATGAA 9 cut(s) 78, 381, 506, 725, 990, 2038, 2055, 2169, 2648
TspRI CASTG 7 cut(s) 119, 865, 1165, 1267, 1734, 1821, 2150
Van91I CCANNNNNTGG 1 cut(s) 958
Vha464I CTTAAG 2 cut(s) 341, 833
VpaK11BI GGWCC 5 cut(s) 130, 510, 855, 1963, 2105
VspI ATTAAT 1 cut(s) 1545
XagI CCTNNNNNAGG 2 cut(s) 986, 2072
XapI RAATTY 5 cut(s) 238, 869, 1051, 1444, 2176
XbaI TCTAGA 1 cut(s) 2293
XceI RCATGY 2 cut(s) 80, 2102
XcmI CCANNNNNNNNNTGG 2 cut(s) 1411, 1813
XhoI CTCGAG 2 cut(s) 179, 941
XmiI GTMKAC 2 cut(s) 143, 2520
XmnI GAANNNNTTC 3 cut(s) 392, 549, 1918
XspI CTAG 4 cut(s) 2135, 2294, 2823, 2892
Zsp2I ATGCAT 2 cut(s) 2561, 3295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.