Rroxscaffold_6G00430070

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000126
Physical Location & Seq
Forward (+)
50257946 .. 50261680
3735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430070.1

Sequence Viewer

Length: 2475 bp
ATGGAGAATGATCCAGACCCGGAAATGGAAGAGTTGGAGGCGAGGCAGAGGAGCCTAGGCAGAGCCTTCGACTCCTTGAATGTCCAGGCTTCTTCGGTCCTGTTGTTCACGGCGCAGTGGAAGGAGCTCGAGGACCATTTTGAGTCGACCCGGAAGGAGCTCCGGACCCGGTTGGCGGAGCTGGAGGAGCGCGTGAAGCTAGTCGCGGAGGTGGAAGCGAGGGCGGTGAGGTTGAAGACGGAAATGGAGGCCAAAGCTAAGGAATTGGGGGAAATGGAGGAGGTGGTGGAGCAGAAGCGGCGAGAGGTTGAAGAAGGTAATAGTCAGTTGTGTAGTATTAACTTGTTGATTGAAGAAAACAGAGAAGAGCTTAGAGTTAAAGAGAGTCAGTGTTCGCATTTTGATAGATTGGTTAAGGAGAGGTCGAGGAAGTTGAATTGGGTGGAGAAAAGAGTAGAGGAGAAGTTGAATCGGGTTGAGGTGGAAGAGAGGAAGTTAGATGAGATTAGGGGGTTGATTGAGGAGAAAAGGAGAGAACTTGAAGAGTGTGAGAGTGAGTTGGAGTTGAAAGAGGAGAGATTAAGGTTGGTGGAGAAATTGATTGTTAATTGCGATAAGATACTTGATAAGGAGAAATTGGTTAGTGTAGTGGATTTGAAGGTGAAAGATGTCTGCTTGCTGGAGAAATCAATGGAGGAGTGGTCATGTAAGCTTGAAATGAAGGAGGGGGAGCTCGAAGGATGTGTTGCTAAGATAGAAGCAAAAGAGGGACGAGTTGATAGAAAGATTGAGGAGCTTAATTTGGTTCATAACAAGTTCCTTGATGAGGTTCAGTTGAAAGAGAAACATCTCGGTTCACTTGAAGAATCGGTACTAGAGCGCGAGAAGGATTTGCTTTTTTCAGTCCAGAAGTTAGTACAAGAGTGTTGCCAGGGAAGTGAGTTTACTAGGGATGGAAGAGGACTAGAGCAGTTCATGGATGAGCATTTGAAGAGAATTGATTCCATGTGTATCGAACTGTCAGCGATTCTTAAAGAGTCGTTAGACCCGGCGAAATTGGTTTTGGATGCAATGCAGGGGTTTTATCCGGACAACAGGGAGTTACATTTTGATTTGAGAGTTAGAAGAAGAGGTTGTTGTCTTTTGTTAAAGGAGTTGAAGACAATCTCCCCACAAATTAGTCCTCAGGTGAGAGAGGAGGCAACAAAACTGGCTGCTAATTGGAAGGCCAAGATGACAGTGGCTAGTGACAATGACTTGGAGGTTCTGGGCTTCTTGAGGCTTGTTGCTGCTTATGATTTGGCTTCTATTTATGATGCCAAGGAGCTTAAAGGGCTTCTTTCTAGTGTTTCTAATGGTCAGCAAGCAGCTCATATAGGCCAGGCCCTTGGTTTTGCTGCACCTGCATCTCTTCAAAGTTCGCTAGAACCTGCAAAACAAGTGTTGGATTGGATGCAAACTGATTTATCACAATACTGGACAAAAGGTGATGTTCAGCTCGAAGCAACTTCAATCAAAACCTGCATTTTTGTATTACAGCAGCTAATGAGAGTCGTCCCCCATAATGTCGGACAACATGTGAAAGAGGTTGCAATGAAGTTGGCAGTCCAATGGAAAGCAAAAATGAGAGCTAATGCTGAAAATGCCTGGGAGATTTTGGGCTTTTTGCACTTTATGGCTGCATACGGGTTGATTTTTACTTTAAATGTTGATGAGATTGCAACGCTTCTTGGGATGATTGCTCAGCATAAACAGGCTCTAGAATTCTGTTGGAAACTTCCTTCTGAAGATAAGATCCCTGGTCAGTTTCATGGATCCACCAATTATGTTTTACATATAGGAGAGTTTATCCACTGTCTTGTTGAAAGGAAGCAGCTGATGGAGGCCATTGGATTGATTTGTACCTTCAAATTAATTAACAGTATTCCCCCAGTACCACTCTTAAAAGAATACGTGAAGGAAAAGATGAAGTGTTGCAGAGATGGTTACACAAAAGAGAAATTACATGATGAAAAGGTTAAGGTTGTGGACCAGCACATAACTGATCTAGGAGCAATCATTAACCTCATCAAAGACTACAACCTGGAATCGGAATATCCATCTTCGAATGTTGAAATGGAAATAACTCAACTGGAGAAAGTAAAGGAGAAATGGAGAATAGTTCAGTCAGGGAATGTGGATAAAGAGCAGAAAAGAGGAATCAAACGTCGTAGCAGCACTCCCCCCACTAAGCTCAAACCACAACAGCAGCCCAATAAATCTCATCGGACAGCCGTAATATCTCCTAGGCCTCATCCATTGCAACTTTACACCCCGGTGTATCTGCAGCCAAATCCTTCACCTTTGCTGTTACACTCCAGGCAGTTTGGCGGCATTCAGAATGCTGGAATACTCCACCCAAGTCCTAGTTATCGTCCTAATCTACCCCAGTGGAACCACCTTCCCAACTTTGGTAGTGCCTTCTTTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

824

Amino Acids

94.86

Weight (kDa)

5.96

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 318 - 466 8.9e-32 Frigida-like protein
Frigida PF07899 468 - 717 2.1e-39 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1411
Acc36I ACCTGC 3 cut(s) 1411, 1438, 1529
AccI GTMKAC 1 cut(s) 146
AccII CGCG 3 cut(s) 192, 206, 882
AccIII TCCGGA 2 cut(s) 162, 1087
AciI CCGC 5 cut(s) 176, 206, 224, 298, 2370
AclWI GGATC 4 cut(s) 5, 1789, 1809, 1822
AcsI RAATTY 1 cut(s) 1763
AcuI CTGAAG 1 cut(s) 1806
AfaI GTAC 4 cut(s) 873, 918, 1903, 1935
AfiI CCNNNNNNNGG 5 cut(s) 25, 175, 826, 2089, 2450
AflIII ACRYGT 1 cut(s) 1576
AjnI CCWGG 7 cut(s) 84, 930, 1380, 1646, 1798, 2082, 2357
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AleI CACNNNNGTG 1 cut(s) 2315
Alw21I GWGCWC 3 cut(s) 129, 162, 735
AlwI GGATC 4 cut(s) 5, 1789, 1809, 1822
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 2 cut(s) 162, 1087
AoxI GGCC 6 cut(s) 249, 1227, 1378, 1383, 1884, 2288
ApoI RAATTY 1 cut(s) 1763
AseI ATTAAT 1 cut(s) 1913
Asp700I GAANNNNTTC 1 cut(s) 1000
AspA2I CCTAGG 2 cut(s) 55, 2285
AspLEI GCGC 3 cut(s) 115, 192, 882
AspS9I GGNCC 5 cut(s) 97, 133, 165, 1384, 2029
AsuC2I CCSGG 5 cut(s) 20, 151, 169, 1049, 2315
AsuHPI GGTGA 5 cut(s) 238, 673, 1201, 1499, 2331
AsuII TTCGAA 1 cut(s) 2105
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 4 cut(s) 97, 133, 165, 2029
AvrII CCTAGG 2 cut(s) 55, 2285
AxyI CCTNAGG 1 cut(s) 1185
BamHI GGATCC 1 cut(s) 1814
BanII GRGCYC 3 cut(s) 129, 162, 735
BarI GAAGNNNNNNTAC 4 cut(s) 855, 887, 928, 960
BbsI GAAGAC 2 cut(s) 242, 1166
Bbv12I GWGCWC 3 cut(s) 129, 162, 735
BccI CCATC 4 cut(s) 947, 1873, 1976, 2107
BceAI ACGGC 2 cut(s) 126, 2258
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 7 cut(s) 86, 932, 1382, 1648, 1800, 2084, 2359
BcnI CCSGG 5 cut(s) 20, 151, 169, 1049, 2315
BfmI CTRYAG 1 cut(s) 2324
BfuAI ACCTGC 3 cut(s) 1411, 1438, 1529
BlnI CCTAGG 2 cut(s) 55, 2285
BlpI GCTNAGC 1 cut(s) 1743
Bme18I GGWCC 4 cut(s) 97, 133, 165, 2029
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 5 cut(s) 97, 133, 165, 1384, 2029
BmiI GGNNCC 4 cut(s) 53, 167, 1816, 2435
BmrI ACTGGG 2 cut(s) 1925, 2422
BmsI GCATC 4 cut(s) 1057, 1306, 1415, 1443
BmuI ACTGGG 2 cut(s) 1925, 2422
BpiI GAAGAC 2 cut(s) 242, 1166
BpmI CTGGAG 4 cut(s) 203, 701, 2153, 2341
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 1743
Bpu14I TTCGAA 1 cut(s) 2105
BpuEI CTTGAG 1 cut(s) 1297
BpuMI CCSGG 5 cut(s) 20, 151, 169, 1049, 2315
BsaAI YACGTR 1 cut(s) 1954
BsaJI CCNNGG 8 cut(s) 55, 931, 1320, 1387, 1647, 1798, 2285, 2313
BsaWI WCCGGW 2 cut(s) 162, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 175, 826, 2089, 2450
Bse1I ACTGG 5 cut(s) 1215, 1481, 1931, 2136, 2428
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 3 cut(s) 1077, 1599, 2297
BseAI TCCGGA 2 cut(s) 162, 1087
BseBI CCWGG 7 cut(s) 86, 932, 1382, 1648, 1800, 2084, 2359
BseDI CCNNGG 8 cut(s) 55, 931, 1320, 1387, 1647, 1798, 2285, 2313
BseGI GGATG 7 cut(s) 746, 958, 985, 1072, 1458, 1740, 2293
BseLI CCNNNNNNNGG 5 cut(s) 25, 175, 826, 2089, 2450
BseMI GCAATG 3 cut(s) 1077, 1599, 2297
BseMII CTCAG 2 cut(s) 1199, 1757
BseNI ACTGG 5 cut(s) 1215, 1481, 1931, 2136, 2428
BseRI GAGGAG 9 cut(s) 64, 200, 293, 473, 536, 587, 710, 806, 1211
BsgI GTGCAG 1 cut(s) 1383
Bsh1236I CGCG 3 cut(s) 192, 206, 882
BshFI GGCC 6 cut(s) 251, 1229, 1380, 1385, 1886, 2290
BsiHKAI GWGCWC 3 cut(s) 129, 162, 735
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 7 cut(s) 20, 151, 163, 169, 1049, 1088, 2315
BslFI GGGAC 2 cut(s) 783, 1541
BslI CCNNNNNNNGG 5 cut(s) 25, 175, 826, 2089, 2450
BsmFI GGGAC 2 cut(s) 783, 1541
BsmI GAATGC 2 cut(s) 2373, 2386
BsnI GGCC 6 cut(s) 251, 1229, 1380, 1385, 1886, 2290
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 2105
Bsp1286I GDGCHC 3 cut(s) 129, 162, 735
Bsp13I TCCGGA 2 cut(s) 162, 1087
Bsp143I GATC 4 cut(s) 10, 1794, 1814, 2044
Bsp1720I GCTNAGC 1 cut(s) 1743
BspACI CCGC 5 cut(s) 176, 206, 224, 298, 2370
BspANI GGCC 6 cut(s) 251, 1229, 1380, 1385, 1886, 2290
BspCNI CTCAG 2 cut(s) 1198, 1756
BspEI TCCGGA 2 cut(s) 162, 1087
BspFNI CGCG 3 cut(s) 192, 206, 882
BspLI GGNNCC 4 cut(s) 53, 167, 1816, 2435
BspMAI CTGCAG 1 cut(s) 2328
BspMI ACCTGC 3 cut(s) 1411, 1438, 1529
BspPI GGATC 4 cut(s) 5, 1789, 1809, 1822
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 2105
BsrDI GCAATG 3 cut(s) 1077, 1599, 2297
BsrI ACTGG 5 cut(s) 1215, 1481, 1931, 2136, 2428
BssECI CCNNGG 8 cut(s) 55, 931, 1320, 1387, 1647, 1798, 2285, 2313
BssMI GATC 4 cut(s) 10, 1794, 1814, 2044
BssT1I CCWWGG 4 cut(s) 55, 1320, 1387, 2285
Bst2UI CCWGG 7 cut(s) 86, 932, 1382, 1648, 1800, 2084, 2359
Bst4CI ACNGT 4 cut(s) 1020, 1240, 1856, 1922
Bst6I CTCTTC 8 cut(s) 24, 360, 480, 537, 952, 986, 1123, 1416
BstBAI YACGTR 1 cut(s) 1954
BstBI TTCGAA 1 cut(s) 2105
BstC8I GCNNGC 2 cut(s) 677, 1365
BstDEI CTNAG 6 cut(s) 258, 371, 750, 1185, 1743, 2229
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 7 cut(s) 746, 958, 985, 1072, 1458, 1740, 2293
BstFNI CGCG 3 cut(s) 192, 206, 882
BstHHI GCGC 3 cut(s) 115, 192, 882
BstKTI GATC 4 cut(s) 13, 1797, 1817, 2047
BstMBI GATC 4 cut(s) 10, 1794, 1814, 2044
BstMWI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1333, 1403, 1643
BstNI CCWGG 7 cut(s) 86, 932, 1382, 1648, 1800, 2084, 2359
BstNSI RCATGY 1 cut(s) 1580
BstSFI CTRYAG 1 cut(s) 2324
BstUI CGCG 3 cut(s) 192, 206, 882
BstV2I GAAGAC 2 cut(s) 242, 1166
BstX2I RGATCY 2 cut(s) 1794, 1814
BstXI CCANNNNNNTGG 1 cut(s) 1388
BstYI RGATCY 2 cut(s) 1794, 1814
Bsu36I CCTNAGG 1 cut(s) 1185
BsuRI GGCC 6 cut(s) 251, 1229, 1380, 1385, 1886, 2290
BtsCI GGATG 7 cut(s) 746, 958, 985, 1072, 1458, 1740, 2293
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 5 cut(s) 122, 395, 1245, 1852, 2435
BveI ACCTGC 3 cut(s) 1411, 1438, 1529
Cac8I GCNNGC 2 cut(s) 677, 1365
CfoI GCGC 3 cut(s) 115, 192, 882
Cfr13I GGNCC 5 cut(s) 97, 133, 165, 1384, 2029
Csp6I GTAC 4 cut(s) 872, 917, 1902, 1934
CviAII CATG 6 cut(s) 705, 976, 1006, 1577, 1811, 2006
CviQI GTAC 4 cut(s) 872, 917, 1902, 1934
DdeI CTNAG 6 cut(s) 258, 371, 750, 1185, 1743, 2229
DpnI GATC 4 cut(s) 12, 1796, 1816, 2046
DpnII GATC 4 cut(s) 10, 1794, 1814, 2044
DraI TTTAAA 1 cut(s) 1704
Eam1104I CTCTTC 8 cut(s) 24, 360, 480, 537, 952, 986, 1123, 1416
EarI CTCTTC 8 cut(s) 24, 360, 480, 537, 952, 986, 1123, 1416
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 3 cut(s) 127, 160, 733
Eco130I CCWWGG 4 cut(s) 55, 1320, 1387, 2285
Eco147I AGGCCT 1 cut(s) 2290
Eco24I GRGCYC 3 cut(s) 129, 162, 735
Eco47I GGWCC 4 cut(s) 97, 133, 165, 2029
Eco53kI GAGCTC 3 cut(s) 127, 160, 733
Eco57I CTGAAG 1 cut(s) 1806
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 3 cut(s) 127, 160, 733
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 1384
EcoRI GAATTC 1 cut(s) 1763
EcoRII CCWGG 7 cut(s) 84, 930, 1380, 1646, 1798, 2082, 2357
EcoT14I CCWWGG 4 cut(s) 55, 1320, 1387, 2285
EcoT38I GRGCYC 3 cut(s) 129, 162, 735
ErhI CCWWGG 4 cut(s) 55, 1320, 1387, 2285
FaeI CATG 6 cut(s) 708, 979, 1009, 1580, 1814, 2009
FalI AAGNNNNNCTT 2 cut(s) 1323, 1355
FaqI GGGAC 2 cut(s) 783, 1541
FatI CATG 6 cut(s) 704, 975, 1005, 1576, 1810, 2005
FblI GTMKAC 1 cut(s) 146
FokI GGATG 7 cut(s) 753, 965, 992, 1079, 1465, 1747, 2280
FriOI GRGCYC 3 cut(s) 129, 162, 735
GlaI GCGC 3 cut(s) 114, 191, 881
GsuI CTGGAG 4 cut(s) 203, 701, 2153, 2341
HaeIII GGCC 6 cut(s) 251, 1229, 1380, 1385, 1886, 2290
HapII CCGG 7 cut(s) 20, 151, 163, 169, 1049, 1088, 2315
HhaI GCGC 3 cut(s) 115, 192, 882
Hin1II CATG 6 cut(s) 708, 979, 1009, 1580, 1814, 2009
Hin6I GCGC 3 cut(s) 113, 190, 880
HinP1I GCGC 3 cut(s) 113, 190, 880
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 710
HpaII CCGG 7 cut(s) 20, 151, 163, 169, 1049, 1088, 2315
HphI GGTGA 5 cut(s) 238, 673, 1201, 1499, 2331
Hpy166II GTNNAC 5 cut(s) 108, 147, 857, 945, 2029
Hpy188I TCNGA 6 cut(s) 1571, 1786, 2092, 2268, 2379, 2474
Hpy188III TCNNGA 6 cut(s) 14, 163, 907, 1088, 1276, 1760
Hpy8I GTNNAC 5 cut(s) 108, 147, 857, 945, 2029
Hpy99I CGWCG 1 cut(s) 2211
HpyCH4III ACNGT 4 cut(s) 1020, 1240, 1856, 1922
HpyCH4IV ACGT 2 cut(s) 1953, 2206
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1333, 1403, 1643
HpyF3I CTNAG 6 cut(s) 258, 371, 750, 1185, 1743, 2229
HpySE526I ACGT 2 cut(s) 1953, 2206
Hsp92II CATG 6 cut(s) 708, 979, 1009, 1580, 1814, 2009
HspAI GCGC 3 cut(s) 113, 190, 880
Kpn2I TCCGGA 2 cut(s) 162, 1087
Kzo9I GATC 4 cut(s) 10, 1794, 1814, 2044
LguI GCTCTTC 1 cut(s) 360
LweI GCATC 4 cut(s) 1057, 1306, 1415, 1443
MaeII ACGT 2 cut(s) 1953, 2206
MaeIII GTNAC 4 cut(s) 1101, 1247, 1985, 2349
MalI GATC 4 cut(s) 12, 1796, 1816, 2046
MboI GATC 4 cut(s) 10, 1794, 1814, 2044
MflI RGATCY 2 cut(s) 1794, 1814
MhlI GDGCHC 3 cut(s) 129, 162, 735
MlyI GAGTC 5 cut(s) 65, 152, 394, 1046, 1560
MmeI TCCRAC 5 cut(s) 15, 540, 1425, 1549, 1751
MroI TCCGGA 2 cut(s) 162, 1087
MroXI GAANNNNTTC 1 cut(s) 1000
MslI CAYNNNNRTG 1 cut(s) 2315
MspA1I CMGCKG 1 cut(s) 1876
MspI CCGG 7 cut(s) 20, 151, 163, 169, 1049, 1088, 2315
Mva1269I GAATGC 2 cut(s) 2373, 2386
MvaI CCWGG 7 cut(s) 86, 932, 1382, 1648, 1800, 2084, 2359
MvnI CGCG 3 cut(s) 192, 206, 882
MwoI GCNNNNNNNGC 6 cut(s) 187, 196, 298, 1333, 1403, 1643
NciI CCSGG 5 cut(s) 20, 151, 169, 1049, 2315
NdeII GATC 4 cut(s) 10, 1794, 1814, 2044
NlaIII CATG 6 cut(s) 708, 979, 1009, 1580, 1814, 2009
NlaIV GGNNCC 4 cut(s) 53, 167, 1816, 2435
NmuCI GTSAC 1 cut(s) 1247
NspI RCATGY 1 cut(s) 1580
NspV TTCGAA 1 cut(s) 2105
OliI CACNNNNGTG 1 cut(s) 2315
PacI TTAATTAA 1 cut(s) 1917
PaeR7I CTCGAG 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 1411
PceI AGGCCT 1 cut(s) 2290
PciI ACATGT 1 cut(s) 1576
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 2 cut(s) 2373, 2386
PdmI GAANNNNTTC 1 cut(s) 1000
PfeI GAWTC 6 cut(s) 469, 866, 1001, 1027, 2087, 2199
PleI GAGTC 5 cut(s) 65, 151, 393, 1045, 1559
PpsI GAGTC 5 cut(s) 65, 151, 393, 1045, 1559
Ppu21I YACGTR 1 cut(s) 1954
PscI ACATGT 1 cut(s) 1576
PshBI ATTAAT 1 cut(s) 1913
Psp124BI GAGCTC 3 cut(s) 129, 162, 735
Psp6I CCWGG 7 cut(s) 84, 930, 1380, 1646, 1798, 2082, 2357
PspGI CCWGG 7 cut(s) 84, 930, 1380, 1646, 1798, 2082, 2357
PspN4I GGNNCC 4 cut(s) 53, 167, 1816, 2435
PspPI GGNCC 5 cut(s) 97, 133, 165, 1384, 2029
PspXI VCTCGAGB 1 cut(s) 128
PstI CTGCAG 1 cut(s) 2328
PsuI RGATCY 2 cut(s) 1794, 1814
PvuII CAGCTG 1 cut(s) 1876
RsaI GTAC 4 cut(s) 873, 918, 1903, 1935
RsaNI GTAC 4 cut(s) 872, 917, 1902, 1934
RseI CAYNNNNRTG 1 cut(s) 2315
SacI GAGCTC 3 cut(s) 129, 162, 735
SalI GTCGAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 360
Sau3AI GATC 4 cut(s) 10, 1794, 1814, 2044
Sau96I GGNCC 5 cut(s) 97, 133, 165, 1384, 2029
SchI GAGTC 5 cut(s) 65, 152, 394, 1046, 1560
SduI GDGCHC 3 cut(s) 129, 162, 735
SfaNI GCATC 4 cut(s) 1057, 1306, 1415, 1443
SfcI CTRYAG 1 cut(s) 2324
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 2105
SinI GGWCC 4 cut(s) 97, 133, 165, 2029
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 2315
SmlI CTYRAG 2 cut(s) 128, 1276
SmoI CTYRAG 2 cut(s) 128, 1276
SseBI AGGCCT 1 cut(s) 2290
SsiI CCGC 5 cut(s) 176, 206, 224, 298, 2370
SstI GAGCTC 3 cut(s) 129, 162, 735
StuI AGGCCT 1 cut(s) 2290
StyI CCWWGG 4 cut(s) 55, 1320, 1387, 2285
TaaI ACNGT 4 cut(s) 1020, 1240, 1856, 1922
TaiI ACGT 2 cut(s) 1956, 2209
TaqI TCGA 8 cut(s) 69, 129, 146, 425, 735, 1014, 1500, 2105
TaqII GACCGA 1 cut(s) 85
TatI WGTACW 1 cut(s) 916
TauI GCSGC 2 cut(s) 301, 2373
TfiI GAWTC 6 cut(s) 469, 866, 1001, 1027, 2087, 2199
TscAI CASTG 5 cut(s) 122, 395, 1245, 1859, 2435
TseFI GTSAC 1 cut(s) 1247
Tsp45I GTSAC 1 cut(s) 1247
TspDTI ATGAA 7 cut(s) 734, 797, 964, 1610, 1799, 1982, 2025
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 5 cut(s) 122, 395, 1245, 1859, 2435
VpaK11BI GGWCC 4 cut(s) 97, 133, 165, 2029
VspI ATTAAT 1 cut(s) 1913
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 1 cut(s) 1763
XbaI TCTAGA 1 cut(s) 1759
XceI RCATGY 1 cut(s) 1580
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XhoI CTCGAG 1 cut(s) 128
XmaJI CCTAGG 2 cut(s) 55, 2285
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.