Prupe.6G334700_v2.0.a1

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000126
Physical Location & Seq
Reverse (-)
29087827 .. 29094290
6464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G334700.2

Sequence Viewer

Length: 3993 bp
ATGGAGAAGATAGAGTCGGATTTGAAAGAGTCTGAGTTCAAGCAGAGGAGCCTAGCCAAGGCGTACGATATTATACATGCGCAAGCTAATTCGTTCCTCATTTTTACTGTGCAGTGGAAGGACCTCGAGGACCACTTTGAGTGGACTCGGAACTCGCTAGAGACCCGGTTCCAAGAACTCGAGGCCCGCGAGGAGGATATCGGAGTCCGGGAGACGAAGTTGGAAGCCAAAGAGTGGAACTTTCGCTCGGAGAAGGAAGCGAAAGCCTGCGAGTTGCGCGGCCTTGATAGATTGATCGATCAGAAATTGAAAGAGGTAACTGACTGTAAAAACCACTTGCATTCACTTTTGTCATTGATTCAAGAACACAGCGATGAGGTCATTGTTCAAGAGAATCGGTTGATGGAAGTTGAGAAGTTTGTTAGAGAGAAGGAGATGGAGTTTGATTCGATTGACCGGCGTGTTAAAGAAAGGATGAAAAAATTGAATTGGGTTGAGAAAATTGTGGAAGAGAAGGAGATGGAGTTTGATTCGATTGACCAGCGTGTTAAAGAGGGGACCGAAAATTTGAATTGGGTCGAGAAAATTCTGGAAGAGAAGTCGAAATTGGCCGAGTCTAAGGAGGAGGAAGTGAAACGCTTTCAAGAAGCGTTGAACAAGTACGTTGAGGACATAGAGTTGAAGAAGAGGCAATTGAATGAGATTCTTGGGTCAATTGAGAAGCACAAGAAAGAGTTTGATTTGAAAGAAGAGCTAGTTGAAGCAACGAAAAGATCGATTGAGGAATGCGACAGGGAGTTGATATTGAAAGAGGAGAAACTTAAGTTGATTCAAAAATCGTTAGTGGAGTGCTCTAATACACTCGAATCGAGAGAGAAAAATATTAAGGAAATGGATTTGAAAGAGAGAGATTTTGGTATGCTTAAGAATTCAATGGAGGAGTGGTCTTGTAAACTTGATTTCAGAGCGAGGGAACTTGAATTGATGGACAAGAGGGTAATTGAACGCTTCAACAAGGTTAAGTTGAAAGAAAAGAATTTGGATGAACTCCAAAAATCGATCAGAGATGGCGAGAAGCATTTGGATAAAATGTCTAAGGGACTTCAAATGAAAGAGGGTCAACTTGAAGACCAGGTCAAAGAGCTTGCATTGAGGCAGAAAGAAGTTGATTCGATCAAAAAATCCAATGAAGAACGCACCCAAAACCTGGAATCAAAAGAGAGGCAACTTGAAGACCAGGCCAAAGAGCTTGAATTGAAGCAGAAAGAATTATTTTCGATAAAAAAATCCACTGAAGAACACACCTTAACTTTGAAATTGAAAGAGAGGCAACTTGAAGACCAGGCCCAAGAGCTTGCACTGAAGCAGAAAGAATTTATTTTGATAAAAAATTCCACTGAAGAACACAACGGAATCCTGAAAGCAAAAGAGAGGCAACTTGAAGACCAGGCCAAAGAGCTTGAATTGAAGCAGAAAGAATTTGATTCGATCAGGAAATCCAGTGAAGAACTCCTCCGAAACCTGAAATCAAAAGAAAGGCAACTTGAAGACCAGGCCAAGGAGCTTGAATTGAAGCAGAAAGAATTTGATTCCATTAAAAAATCCACTGAAGAACACACCCGAAACCTGAAATCCAAAGAAATGCAACTTGAGGACCAGGCCAAAGAGCTTGAATTGAAGCAGAAAGAATTTGATTCGATGAAAAAATCCACTGAAGAACACACCCGAAACCTGAAAGCGAAAGAGAGGCAACTTGAAGTCCAGGCCAAAGAGCTTGAATTGAAGCAGAAAGAATTTGATTCAATCAGAAAATCCACTGAAGAACTCATCCAAAACATGAAAGAAAGGCAACTTGAGCAGAAAGAATTTGATTCGATCAGAAAATCCTGTGAAGAACACATCCAAAACATGAAATCGAAAAAAAGGCAAATTGAAGACCAGGCCAAAGGGATTGAATTGAAGCAGAAAGAATTTGATTTGATTAAAAAATCCACTCAAGAACATACCCGAAACCTGAAAGCGAAAGAGAAAATTAATGCCCTTCATTCTCAAGTGAAGATTGAGCAACTGGAATATATCCCTTCCAACCAGGCCTTTGTTCCTTCTTCTGCAATTAATCAATCCAGCATCTATAGGGATGGTAGAGGCTTGCAGTTGTTCATGAATGAGCATTTGAAGAGAATTGATTTAGTGGGTAGTGAAATCTCAGCTGTTCTTGAGGCCTCATTGGACCCAGCAAAATTGGTTTTGGATGCAATGCAAGGGTTTTACCCCTCAAATTCGACTGTAGACAACAGAGAGTGTAATTTTGATTTGAGAGTTATTAGGAGGAGTTGTATTCTTTTGTTAGAGGCTTTAAAGAAAGTCTCACCACAAATTAATCCTCTGGTGAGAGAAGAAGCAATTAAGTTGGCGGGTGACTGGAAGGCTAAAATGACGGGGGCAACCGAGAATTGGTTGGAGATTTTGGGTTTTTTGAGGCTTGTTACTACGTATGAAATCACCTCTGAGTATGATGGGAAGGAGCTTCAAAGTCTTGTTGCTACAATTGCCGAGTATGAACAGGCAACTGAATTATCCCAGGCCCTTGGTAGCACAGAAAAGGGATCTGCCAGCATCATTTTTTCCCCTGTCAAAACTGAGAAACCAGAATCTTCCCTGACCAAAAATGCAGCAGGTGTTTCTTCTCCGAATCTTCAACTAACTGCTACTACAGATGCAACGAATTTGCAGGGGTTTGTACATGAGCTTGCGAGAGGGAATCACTTAATACAAAGTGAAACTTTGGCTGCTCTTCAGACGTCATTGGACCCAGCAAAATTTGTGTTGGATGTGATGCAAAATTCTTTTGCTCAATACTGGGGAAATGGGGATGTTCATTCTAAAGAAACTGTCATGTTGAGTTACATCAACCTATTGGAGCAGCTAATTTGTGTCTCACCGCATGTTGGACCTCATGTGAAGGATGATGCAAGAAAGCTAGCAATCCAGTGGAAAGCAAAAATGGGAGCTGATACTCAAAATTCATTGGAACATTTGGGTTTTTTGCAGTTTATTGCTACATATGGGTTGTTTTCTACCTTTCCTAGATATGATATGGTATCGCTTCTTGGGAGGATTTCTCAGGATAAACAGACTCGAGAATTATGTCAGAAACTCAGTTTTGCAGATAAGATCCCTGCCCATTTTATTCTGAATCTTATTGAAAGAGGGCAACTGATTGAGGCTGTTAGGTTGATTTGCACATTCAAGTTAATTGACACTTTCCCCCCTGTTCCACTCTTAGAAAAGTTTGTGGAGAATACAAAGAACTGGAACAGGAGAATTTGCAAGAAAAAGAAATCACTAGATGAAAAGGTTAAGGTTTTAGATAATGAAATTGCTGATTTAAGAGCTGTGATTCAGTGCATCAAAGATTGCAATCTCGAGTCTGTATACCAATCTGGGAGGATTGAATTACAAATAGCCATGGTTGAGAAAATAAAAGAGGGTCAAAGACATTCAGAGACATCTCTTGCCTGCAAAGTTGGGAGACAAGAGGAGAACAAATCTCTTGTCTGCGAAGTTGAACAACATGAACAGAGTAAATTGATTGTCATCAGGACTGAACAACAAGAGGCTAATAAGTTTGAACAACAAAAGCAGACAAATTGGAATAAACGCAGAGGGGCTCAACCACATCAACAACAACAGCATCCAAATAAATTCCAACGAACAGGGGGATCGGCCGCTAGACTATATCGAATGCCGACTTCCTGTCCTGGCTATCAGCATAGAAGTGTGCCATCTTGGCAGCATGATAATTATAGACACCCTGGGCAGTTTGGTATGGCTGCGGCCAACGAATATGGAATTGGCACTAATTGTGGACACCCTGGGCAGTTTGGTATGTATGCAAACGACTACAATACTGGTGCAATGCAGAATTCTGGAATACATCGCCCGCATCACTTCACCCCCAGCCCTCCTCCACATGGCACTTATCAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

1331

Amino Acids

154.77

Weight (kDa)

6.28

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2666
AatII GACGTC 1 cut(s) 2804
AbsI CCTCGAGG 1 cut(s) 125
Acc16I TGCGCA 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 2666
AccB7I CCANNNNNTGG 2 cut(s) 234, 1207
AccI GTMKAC 2 cut(s) 2289, 3435
AccII CGCG 2 cut(s) 189, 279
AciI CCGC 7 cut(s) 187, 279, 2414, 2942, 3729, 3836, 3944
AclWI GGATC 3 cut(s) 2614, 3169, 3730
AcoI YGGCCR 3 cut(s) 609, 3726, 3837
AcuI CTGAAG 7 cut(s) 1314, 1382, 1419, 1629, 1734, 1839, 2780
AcyI GRCGYC 1 cut(s) 2801
AfaI GTAC 3 cut(s) 65, 662, 2742
AfiI CCNNNNNNNGG 8 cut(s) 58, 193, 234, 1207, 1558, 2454, 2948, 3974
AflII CTTAAG 2 cut(s) 821, 923
AhdI GACNNNNNGTC 1 cut(s) 3756
AjuI GAANNNNNNNTTGG 4 cut(s) 590, 622, 3837, 3869
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 6 cut(s) 155, 206, 2371, 2941, 3500, 3526
AlwI GGATC 3 cut(s) 2614, 3169, 3730
Ama87I CYCGRG 4 cut(s) 125, 179, 3138, 3425
ApeKI GCWGC 5 cut(s) 2672, 2789, 2923, 3793, 3833
ArsI GACNNNNNNTTYG 4 cut(s) 550, 582, 3540, 3572
AseI ATTAAT 3 cut(s) 2034, 2115, 2379
AspLEI GCGC 2 cut(s) 82, 279
AsuC2I CCSGG 2 cut(s) 166, 209
AsuHPI GGTGA 6 cut(s) 2361, 2401, 2429, 2494, 2931, 3946
AsuNHI GCTAGC 1 cut(s) 2980
AvaI CYCGRG 4 cut(s) 125, 179, 3138, 3425
AvaII GGWCC 7 cut(s) 121, 130, 558, 1654, 2230, 2809, 2951
BanII GRGCYC 1 cut(s) 3673
BbsI GAAGAC 6 cut(s) 1134, 1239, 1344, 1449, 1554, 1941
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 5 cut(s) 2684, 2776, 2935, 3805, 3820
BccI CCATC 8 cut(s) 397, 430, 514, 979, 1061, 2132, 2510, 3793
BcnI CCSGG 2 cut(s) 166, 209
BcoDI GTCTC 6 cut(s) 155, 206, 2371, 2941, 3500, 3526
BfaI CTAG 8 cut(s) 53, 158, 755, 2981, 3087, 3347, 3732, 3991
BfmI CTRYAG 3 cut(s) 2131, 2286, 2712
BfrI CTTAAG 2 cut(s) 821, 923
BfuAI ACCTGC 1 cut(s) 2666
BglI GCCNNNNNGGC 1 cut(s) 3790
BisI GCNGC 8 cut(s) 280, 2673, 2790, 2924, 3729, 3794, 3834, 3837
BlsI GCNGC 8 cut(s) 281, 2674, 2791, 2925, 3730, 3795, 3835, 3838
Bme18I GGWCC 7 cut(s) 121, 130, 558, 1654, 2230, 2809, 2951
BmeRI GACNNNNNGTC 1 cut(s) 3756
BmeT110I CYCGRG 4 cut(s) 125, 179, 3138, 3425
BmiI GGNNCC 5 cut(s) 50, 170, 559, 2232, 2811
BmrI ACTGGG 1 cut(s) 2869
BmsI GCATC 9 cut(s) 2136, 2242, 2625, 2707, 2826, 2959, 3417, 3703, 3955
BmtI GCTAGC 1 cut(s) 2984
BmuI ACTGGG 1 cut(s) 2869
BpiI GAAGAC 6 cut(s) 1134, 1239, 1344, 1449, 1554, 1941
BplI GAGNNNNNCTC 2 cut(s) 3106, 3138
BpuEI CTTGAG 5 cut(s) 1670, 1874, 1980, 2034, 2237
BpuMI CCSGG 2 cut(s) 166, 209
Bsa29I ATCGAT 3 cut(s) 297, 776, 1058
BsaAI YACGTR 1 cut(s) 2493
BsaBI GATNNNNATC 2 cut(s) 3420, 3596
BsaHI GRCGYC 1 cut(s) 2801
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 9 cut(s) 57, 1557, 2580, 2587, 3468, 3814, 3815, 3874, 3875
Bsc4I CCNNNNNNNGG 8 cut(s) 58, 193, 234, 1207, 1558, 2454, 2948, 3974
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 7 cut(s) 1500, 2073, 2426, 2864, 2989, 3317, 3916
Bse3DI GCAATG 2 cut(s) 2262, 3924
Bse8I GATNNNNATC 2 cut(s) 3420, 3596
BseCI ATCGAT 3 cut(s) 297, 776, 1058
BseDI CCNNGG 9 cut(s) 57, 1557, 2580, 2587, 3468, 3814, 3815, 3874, 3875
BseJI GATNNNNATC 2 cut(s) 3420, 3596
BseLI CCNNNNNNNGG 8 cut(s) 58, 193, 234, 1207, 1558, 2454, 2948, 3974
BseMI GCAATG 2 cut(s) 2262, 3924
BseMII CTCAG 6 cut(s) 24, 2220, 2499, 2631, 3137, 3172
BseNI ACTGG 7 cut(s) 1500, 2073, 2426, 2864, 2989, 3317, 3916
BseRI GAGGAG 9 cut(s) 61, 206, 638, 827, 953, 1502, 2344, 3554, 3957
BseX3I CGGCCG 1 cut(s) 3726
BseXI GCAGC 5 cut(s) 2684, 2776, 2935, 3805, 3820
BseYI CCCAGC 3 cut(s) 2233, 2812, 3959
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 189, 279
Bsh1285I CGRYCG 1 cut(s) 3729
BshVI ATCGAT 3 cut(s) 297, 776, 1058
BsiEI CGRYCG 1 cut(s) 3729
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 4 cut(s) 125, 179, 3138, 3425
BsiSI CCGG 3 cut(s) 166, 208, 457
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 2 cut(s) 571, 1113
BslI CCNNNNNNNGG 8 cut(s) 58, 193, 234, 1207, 1558, 2454, 2948, 3974
BsmAI GTCTC 6 cut(s) 155, 206, 2371, 2941, 3500, 3526
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 571, 1113
BsmI GAATGC 3 cut(s) 340, 791, 3750
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 4 cut(s) 125, 179, 3138, 3425
Bsp1286I GDGCHC 2 cut(s) 854, 3673
Bsp1407I TGTACA 1 cut(s) 2740
Bsp19I CCATGG 1 cut(s) 3468
BspACI CCGC 7 cut(s) 187, 279, 2414, 2942, 3729, 3836, 3944
BspCNI CTCAG 6 cut(s) 25, 2219, 2500, 2632, 3136, 3171
BspDI ATCGAT 3 cut(s) 297, 776, 1058
BspFNI CGCG 2 cut(s) 189, 279
BspHI TCATGA 1 cut(s) 2160
BspLI GGNNCC 5 cut(s) 50, 170, 559, 2232, 2811
BspMI ACCTGC 1 cut(s) 2666
BspOI GCTAGC 1 cut(s) 2984
BspPI GGATC 3 cut(s) 2614, 3169, 3730
BspQI GCTCTTC 2 cut(s) 744, 2799
BspTI CTTAAG 2 cut(s) 821, 923
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 2262, 3924
BsrFI RCCGGY 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 2740
BsrI ACTGG 7 cut(s) 1500, 2073, 2426, 2864, 2989, 3317, 3916
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 9 cut(s) 57, 1557, 2580, 2587, 3468, 3814, 3815, 3874, 3875
BssNAI GTATAC 1 cut(s) 3436
BssNI GRCGYC 1 cut(s) 2801
BssT1I CCWWGG 4 cut(s) 57, 1557, 2587, 3468
Bst1107I GTATAC 1 cut(s) 3436
Bst4CI ACNGT 4 cut(s) 109, 326, 2287, 2893
Bst6I CTCTTC 6 cut(s) 504, 588, 680, 744, 2171, 2799
BstACI GRCGYC 1 cut(s) 2801
BstAFI CTTAAG 2 cut(s) 821, 923
BstAUI TGTACA 1 cut(s) 2740
BstBAI YACGTR 1 cut(s) 2493
BstDEI CTNAG 9 cut(s) 33, 618, 1095, 2206, 2508, 2640, 3123, 3158, 3283
BstDSI CCRYGG 1 cut(s) 3468
BstENI CCTNNNNNAGG 1 cut(s) 56
BstFNI CGCG 2 cut(s) 189, 279
BstHHI GCGC 2 cut(s) 82, 279
BstMAI GTCTC 6 cut(s) 155, 206, 2371, 2941, 3500, 3526
BstMCI CGRYCG 1 cut(s) 3729
BstMWI GCNNNNNNNGC 4 cut(s) 276, 1855, 2549, 3790
BstNSI RCATGY 2 cut(s) 80, 2948
BstSFI CTRYAG 3 cut(s) 2131, 2286, 2712
BstSNI TACGTA 1 cut(s) 2493
BstUI CGCG 2 cut(s) 189, 279
BstV1I GCAGC 5 cut(s) 2684, 2776, 2935, 3805, 3820
BstV2I GAAGAC 6 cut(s) 1134, 1239, 1344, 1449, 1554, 1941
BstX2I RGATCY 2 cut(s) 2606, 3174
BstXI CCANNNNNNTGG 1 cut(s) 2588
BstYI RGATCY 2 cut(s) 2606, 3174
BstZ17I GTATAC 1 cut(s) 3436
BstZI CGGCCG 1 cut(s) 3726
Bsu15I ATCGAT 3 cut(s) 297, 776, 1058
BsuTUI ATCGAT 3 cut(s) 297, 776, 1058
BtgI CCRYGG 1 cut(s) 3468
BtgZI GCGATG 2 cut(s) 387, 3923
BtsI GCAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 2666
CciI TCATGA 1 cut(s) 2160
CfoI GCGC 2 cut(s) 82, 279
Cfr10I RCCGGY 1 cut(s) 456
ClaI ATCGAT 3 cut(s) 297, 776, 1058
CsiI ACCWGGT 1 cut(s) 1131
Csp6I GTAC 3 cut(s) 64, 661, 2741
CviQI GTAC 3 cut(s) 64, 661, 2741
DdeI CTNAG 9 cut(s) 33, 618, 1095, 2206, 2508, 2640, 3123, 3158, 3283
DraI TTTAAA 1 cut(s) 2358
DriI GACNNNNNGTC 1 cut(s) 3756
EaeI YGGCCR 3 cut(s) 609, 3726, 3837
EagI CGGCCG 1 cut(s) 3726
Eam1104I CTCTTC 6 cut(s) 504, 588, 680, 744, 2171, 2799
Eam1105I GACNNNNNGTC 1 cut(s) 3756
EarI CTCTTC 6 cut(s) 504, 588, 680, 744, 2171, 2799
EclXI CGGCCG 1 cut(s) 3726
Eco105I TACGTA 1 cut(s) 2493
Eco130I CCWWGG 4 cut(s) 57, 1557, 2587, 3468
Eco147I AGGCCT 2 cut(s) 2093, 2222
Eco24I GRGCYC 1 cut(s) 3673
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 7 cut(s) 121, 130, 558, 1654, 2230, 2809, 2951
Eco52I CGGCCG 1 cut(s) 3726
Eco57I CTGAAG 7 cut(s) 1314, 1382, 1419, 1629, 1734, 1839, 2780
Eco88I CYCGRG 4 cut(s) 125, 179, 3138, 3425
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO109I RGGNCCY 2 cut(s) 121, 2584
EcoRI GAATTC 2 cut(s) 928, 3925
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 4 cut(s) 57, 1557, 2587, 3468
EcoT38I GRGCYC 1 cut(s) 3673
ErhI CCWWGG 4 cut(s) 57, 1557, 2587, 3468
Esp3I CGTCTC 1 cut(s) 206
FalI AAGNNNNNCTT 2 cut(s) 2767, 2799
FaqI GGGAC 2 cut(s) 571, 1113
FauI CCCGC 3 cut(s) 194, 2407, 3951
FauNDI CATATG 1 cut(s) 3064
FblI GTMKAC 2 cut(s) 2289, 3435
Fnu4HI GCNGC 8 cut(s) 280, 2673, 2790, 2924, 3729, 3794, 3834, 3837
FriOI GRGCYC 1 cut(s) 3673
Fsp4HI GCNGC 8 cut(s) 280, 2673, 2790, 2924, 3729, 3794, 3834, 3837
FspBI CTAG 8 cut(s) 53, 158, 755, 2981, 3087, 3347, 3732, 3991
FspI TGCGCA 1 cut(s) 81
GlaI GCGC 2 cut(s) 81, 278
GluI GCNGC 8 cut(s) 280, 2673, 2790, 2924, 3729, 3794, 3834, 3837
GsaI CCCAGC 3 cut(s) 2237, 2816, 3963
HapII CCGG 3 cut(s) 166, 208, 457
HhaI GCGC 2 cut(s) 82, 279
Hin1I GRCGYC 1 cut(s) 2801
Hin6I GCGC 2 cut(s) 80, 277
HinP1I GCGC 2 cut(s) 80, 277
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HpaII CCGG 3 cut(s) 166, 208, 457
HphI GGTGA 6 cut(s) 2361, 2401, 2429, 2494, 2931, 3946
Hpy166II GTNNAC 6 cut(s) 144, 953, 1121, 2290, 3436, 3869
Hpy8I GTNNAC 6 cut(s) 144, 953, 1121, 2290, 3436, 3869
HpyCH4III ACNGT 4 cut(s) 109, 326, 2287, 2893
HpyCH4IV ACGT 3 cut(s) 663, 2492, 2801
HpyF10VI GCNNNNNNNGC 4 cut(s) 276, 1855, 2549, 3790
HpyF3I CTNAG 9 cut(s) 33, 618, 1095, 2206, 2508, 2640, 3123, 3158, 3283
HpySE526I ACGT 3 cut(s) 663, 2492, 2801
Hsp92I GRCGYC 1 cut(s) 2801
HspAI GCGC 2 cut(s) 80, 277
LguI GCTCTTC 2 cut(s) 744, 2799
LmnI GCTCC 5 cut(s) 48, 1561, 2524, 2920, 3008
Lsp1109I GCAGC 5 cut(s) 2684, 2776, 2935, 3805, 3820
LweI GCATC 9 cut(s) 2136, 2242, 2625, 2707, 2826, 2959, 3417, 3703, 3955
MabI ACCWGGT 1 cut(s) 1131
MaeI CTAG 8 cut(s) 53, 158, 755, 2981, 3087, 3347, 3732, 3991
MaeII ACGT 3 cut(s) 663, 2492, 2801
MaeIII GTNAC 4 cut(s) 316, 2417, 2485, 2903
MfeI CAATTG 3 cut(s) 692, 714, 2547
MflI RGATCY 2 cut(s) 2606, 3174
MhlI GDGCHC 2 cut(s) 854, 3673
MlyI GAGTC 7 cut(s) 23, 38, 139, 213, 623, 3130, 3437
MmeI TCCRAC 6 cut(s) 201, 2109, 2439, 2808, 2929, 3733
MslI CAYNNNNRTG 2 cut(s) 372, 3777
MspA1I CMGCKG 1 cut(s) 2210
MspCI CTTAAG 2 cut(s) 821, 923
MspI CCGG 3 cut(s) 166, 208, 457
MunI CAATTG 3 cut(s) 692, 714, 2547
Mva1269I GAATGC 3 cut(s) 340, 791, 3750
MvnI CGCG 2 cut(s) 189, 279
MwoI GCNNNNNNNGC 4 cut(s) 276, 1855, 2549, 3790
NciI CCSGG 2 cut(s) 166, 209
NcoI CCATGG 1 cut(s) 3468
NdeI CATATG 1 cut(s) 3064
NheI GCTAGC 1 cut(s) 2980
NlaIV GGNNCC 5 cut(s) 50, 170, 559, 2232, 2811
NmeAIII GCCGAG 2 cut(s) 637, 2578
NmuCI GTSAC 1 cut(s) 2417
NsbI TGCGCA 1 cut(s) 81
NspI RCATGY 2 cut(s) 80, 2948
PaeR7I CTCGAG 4 cut(s) 125, 179, 3138, 3425
PagI TCATGA 1 cut(s) 2160
PaqCI CACCTGC 1 cut(s) 2666
PasI CCCWGGG 2 cut(s) 3815, 3875
PceI AGGCCT 2 cut(s) 2093, 2222
PciSI GCTCTTC 2 cut(s) 744, 2799
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 773
PctI GAATGC 3 cut(s) 340, 791, 3750
Pfl23II CGTACG 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 1133
PflMI CCANNNNNTGG 2 cut(s) 234, 1207
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 8 cut(s) 281, 2674, 2791, 2925, 3730, 3795, 3835, 3838
PleI GAGTC 7 cut(s) 22, 37, 139, 212, 622, 3130, 3436
PpsI GAGTC 7 cut(s) 22, 37, 139, 212, 622, 3130, 3436
Ppu21I YACGTR 1 cut(s) 2493
PpuMI RGGWCCY 1 cut(s) 121
PshBI ATTAAT 3 cut(s) 2034, 2115, 2379
Psp5II RGGWCCY 1 cut(s) 121
PspFI CCCAGC 3 cut(s) 2233, 2812, 3959
PspLI CGTACG 1 cut(s) 63
PspN4I GGNNCC 5 cut(s) 50, 170, 559, 2232, 2811
PspPPI RGGWCCY 1 cut(s) 121
PspXI VCTCGAGB 2 cut(s) 125, 179
PsuI RGATCY 2 cut(s) 2606, 3174
PsyI GACNNNGTC 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 2210
RsaI GTAC 3 cut(s) 65, 662, 2742
RsaNI GTAC 3 cut(s) 64, 661, 2741
RseI CAYNNNNRTG 2 cut(s) 372, 3777
SapI GCTCTTC 2 cut(s) 744, 2799
SatI GCNGC 8 cut(s) 280, 2673, 2790, 2924, 3729, 3794, 3834, 3837
SchI GAGTC 7 cut(s) 23, 38, 139, 213, 623, 3130, 3437
SduI GDGCHC 2 cut(s) 854, 3673
SexAI ACCWGGT 1 cut(s) 1131
SfaNI GCATC 9 cut(s) 2136, 2242, 2625, 2707, 2826, 2959, 3417, 3703, 3955
SfcI CTRYAG 3 cut(s) 2131, 2286, 2712
Sfr274I CTCGAG 4 cut(s) 125, 179, 3138, 3425
SinI GGWCC 7 cut(s) 121, 130, 558, 1654, 2230, 2809, 2951
SlaI CTCGAG 4 cut(s) 125, 179, 3138, 3425
SmiMI CAYNNNNRTG 2 cut(s) 372, 3777
SnaBI TACGTA 1 cut(s) 2493
SseBI AGGCCT 2 cut(s) 2093, 2222
SsiI CCGC 7 cut(s) 187, 279, 2414, 2942, 3729, 3836, 3944
SspI AATATT 1 cut(s) 883
SspMI CTAG 8 cut(s) 53, 158, 755, 2981, 3087, 3347, 3732, 3991
StuI AGGCCT 2 cut(s) 2093, 2222
StyI CCWWGG 4 cut(s) 57, 1557, 2587, 3468
TaaI ACNGT 4 cut(s) 109, 326, 2287, 2893
TaiI ACGT 3 cut(s) 666, 2495, 2804
TaqII GACCGA 1 cut(s) 575
TatI WGTACW 1 cut(s) 2740
TauI GCSGC 3 cut(s) 282, 3731, 3839
TseFI GTSAC 1 cut(s) 2417
TseI GCWGC 5 cut(s) 2672, 2789, 2923, 3793, 3833
Tsp45I GTSAC 1 cut(s) 2417
TspGWI ACGGA 1 cut(s) 1425
Tth111I GACNNNGTC 1 cut(s) 1133
Van91I CCANNNNNTGG 2 cut(s) 234, 1207
Vha464I CTTAAG 2 cut(s) 821, 923
VpaK11BI GGWCC 7 cut(s) 121, 130, 558, 1654, 2230, 2809, 2951
VspI ATTAAT 3 cut(s) 2034, 2115, 2379
XagI CCTNNNNNAGG 1 cut(s) 56
XceI RCATGY 2 cut(s) 80, 2948
XhoI CTCGAG 4 cut(s) 125, 179, 3138, 3425
XmiI GTMKAC 2 cut(s) 2289, 3435
XspI CTAG 8 cut(s) 53, 158, 755, 2981, 3087, 3347, 3732, 3991
ZraI GACGTC 1 cut(s) 2802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.