Rmu_sc0042937.1_g000001

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042937.1
OG0000126
Physical Location & Seq
Reverse (-)
2 .. 1286
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042937.1_g000001.1.cds

Sequence Viewer

Length: 1285 bp
atggagactgcggcggcggagttggaacaaaaatcggaggcgaaacagaggagcctaggcgcggcgtttgagtcgttgagttcgcaagcttcgtcgattctgaagtttacggtggagtggaaggagctggaggaccatttcgagtcgacccggagggtgctccggacccggttcgaggaggtaagggatcgcgtgaaggaggtggcggagatggaggcgaaggaggagaggctgaagatggaggtgaaggggagggagaaggagttgggggaaatcgaggaggtggtggagcggaggaggagggaggtggaggaaagtgagagttatttggagtctgtgagggctttgattgtagagaatgatgaggagcttagggttagggaggagaggtatgataaagttgagagattgattagggagaaggagagggaggtggaggagatggagaagcatgtgagagagaggtctaggaagttgagttggctggacaagaggatagaggtgaagaagaaggaggttgagaggaaggagagggagttgagagaggttagggatttggaggagaagaaattgagtggtgttaggggcttgattgaggagaagaggaaggaagttgagttgaaggaagatgagatggtgatggtgaaagggagggttgaggattgtgatagggaaatgaaggagaaagaggagaggctgagtttgattgagaaatcgaaagaggaaatgattggtgtggtggatttgaaagggaaagagttctgtttgctgaagaaatcaatggaggagtggtgctgtaagattgaagtgaaggagagggagcttgaaggatgggttgataagttggaatcgaaagagaaggaagttgaattgaaggttgaggagcttgatttgattcgtagcaagttccttgatgaggttcagttcaaagaaaagcatttggattcgcttgaaaaatcgttactagaatgggaggaggatctgcattccctccagaagtcggtacaagaatgttcccggggaagtgagatcattagggatggaagaggattgcagcagttcatggacgagcatctgaagagaattgattccatgggtactgaactgtcagcgattcttaaagagtcttcagacccggggaagttggttttggatgcaatgcaggggttttatgctgacaacagggagttagattttgaattgagagttagaagaagaagttgttgtcttttgttagaggagttgaggagaatctctccacaaatgaatccgcaagtgaaagagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

428

Amino Acids

51.17

Weight (kDa)

5.17

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04990
fragaria_vesca FvH4_5g20491 FvH4_5g20491 FvH4_5g20491 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04261 FvH4_6g04310 FvH4_6g04310 FvH4_6g04320 FvH4_6g04320 FvH4_6g04380 FvH4_6g04380 FvH4_6g04410 FvH4_6g04410 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04420 FvH4_6g04421 FvH4_6g04421 FvH4_6g04421 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04431 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04550 FvH4_6g04561 FvH4_6g04562 FvH4_7g18700
malus_domestica MD04G1214600.v1.1 MD04G1214700.v1.1 MD12G1013700.v1.1 MD12G1229200.v1.1 MD12G1229900.v1.1 MD12G1230000.v1.1 MD14G1011100.v1.1
prunus_persica Prupe.1G243600_v2.0.a1 Prupe.6G334600_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.6G334700_v2.0.a1 Prupe.7G018200_v2.0.a1
pyrus_communis pycom03g04860 pycom04g18970 pycom04g18980 pycom11g05330 pycom11g05340 pycom11g05350 pycom12g01100 pycom12g01110 pycom12g21380 pycom14g00990
rosa_chinensis RchiOBHm_Chr2g0124181 RchiOBHm_Chr3g0452971 RchiOBHm_Chr3g0452981 RchiOBHm_Chr3g0452991 RchiOBHm_Chr3g0453041 RchiOBHm_Chr3g0453051 RchiOBHm_Chr3g0453061 RchiOBHm_Chr3g0453081 RchiOBHm_Chr3g0453091 RchiOBHm_Chr4g0411451 RchiOBHm_Chr7g0205851 RchiOBHm_Chr7g0237441
rosa_laevigata RLG00000001002 RLG00000003350 RLG00000008356 RLG00000018794 RLG00000025538 RLG00000025541 RLG00000025542 RLG00000025544 RLG00000025545 RLG00000025552 RLG00000025553 RLG00000025555 RLG00000025557
rosa_multiflora Rmu_co8055994.1_g000001 Rmu_co8332235.1_g000001 Rmu_co8359511.1_g000001 Rmu_sc0000076.1_g000037 Rmu_sc0000832.1_g000001 Rmu_sc0001982.1_g000017 Rmu_sc0002843.1_g000008 Rmu_sc0002923.1_g000015 Rmu_sc0002923.1_g000020 Rmu_sc0005888.1_g000004 Rmu_sc0005888.1_g000007 Rmu_sc0005888.1_g000012 Rmu_sc0005888.1_g000013 Rmu_sc0005888.1_g000014 Rmu_sc0005888.1_g000015 Rmu_sc0007863.1_g000006 Rmu_sc0008518.1_g000002 Rmu_sc0008797.1_g000002 Rmu_sc0008797.1_g000003 Rmu_sc0008797.1_g000007 Rmu_sc0009015.1_g000007 Rmu_sc0009015.1_g000008 Rmu_sc0012369.1_g000002 Rmu_sc0013935.1_g000001 Rmu_sc0019895.1_g000001 Rmu_sc0023319.1_g000001 Rmu_sc0030229.1_g000001 Rmu_sc0033390.1_g000001 Rmu_sc0042937.1_g000001 Rmu_ssc0000052.1_g000010
rosa_roxburghii Rroxscaffold_3G00224200 Rroxscaffold_3G00251930 Rroxscaffold_5G00356050 Rroxscaffold_6G00429980 Rroxscaffold_6G00430030 Rroxscaffold_6G00430040 Rroxscaffold_6G00430070 Rroxscaffold_6G00430080 Rroxscaffold_6G00430090 Rroxscaffold_6G00430130 Rroxscaffold_6G00430140 Rroxscaffold_6G00430160
rosa_rugosa Rorug02G0250200 Rorug02G0643800 Rorug02G0643900 Rorug02G0644000 Rorug02G0644100 Rorug02G0644200 Rorug02G0644500 Rorug02G0644600 Rorug02G0644800 Rorug02G0644900 Rorug02G0645000 Rorug02G0645800 Rorug02G0645900 Rorug02G0646200 Rorug02G0646400.1 Rorug04G0108800 Rorug07G0093400 Rorug07G0303400 Rorug07G0303500 Rorug07G0303600 Rorug07G0303600 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700 Rorug07G0303700
rosa_samantha Rh2AG308300 Rh2BG317200 Rh2DG332300 Rh3AG047000 Rh3AG047100 Rh3AG047200 Rh3AG047300 Rh3AG047400 Rh3AG048600 Rh3AG048700 Rh3AG048900 Rh3AG049000 Rh3BG049400 Rh3BG049500 Rh3BG049600 Rh3BG049700 Rh3BG049900 Rh3BG050200 Rh3CG048100 Rh3CG048200 Rh3CG048400 Rh3CG048500 Rh3CG048700 Rh3CG049800 Rh3CG049900 Rh3CG050200 Rh3CG050300 Rh3DG049000 Rh3DG049100 Rh3DG049300 Rh3DG049400 Rh3DG049500 Rh3DG050600 Rh3DG050700 Rh3DG050900 Rh3DG051000 Rh4AG168200 Rh4BG165100 Rh4CG179700 Rh4DG162700 Rh5BG257600 Rh7AG225000 Rh7AG460700 Rh7BG220200 Rh7BG430500 Rh7CG238600 Rh7CG477900 Rh7DG047500 Rh7DG231700 Rh7DG447300
rosa_wichuraiana Rw2G005470 Rw2G024840 Rw3G003690 Rw3G003700 Rw3G003710 Rw3G003740 Rw3G003750 Rw4G013890 Rw4G013980 Rw7G019410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 146
AccII CGCG 2 cut(s) 62, 192
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 7 cut(s) 11, 14, 17, 62, 206, 292, 1271
AclWI GGATC 2 cut(s) 195, 987
AcuI CTGAAG 5 cut(s) 122, 254, 791, 1097, 1113
AfaI GTAC 2 cut(s) 1005, 1099
AfiI CCNNNNNNNGG 4 cut(s) 61, 175, 916, 1000
AgsI TTSAA 9 cut(s) 622, 748, 806, 827, 869, 874, 928, 953, 1199
AjuI GAANNNNNNNTTGG 2 cut(s) 1133, 1165
AluBI AGCT 5 cut(s) 89, 127, 370, 823, 886
AluI AGCT 5 cut(s) 89, 127, 370, 823, 886
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 2 cut(s) 195, 987
Ama87I CYCGRG 2 cut(s) 1017, 1135
Aor13HI TCCGGA 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 1054
Asp700I GAANNNNTTC 2 cut(s) 758, 1087
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 133, 165
AsuC2I CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
AsuHPI GGTGA 4 cut(s) 256, 514, 649, 655
AvaI CYCGRG 2 cut(s) 1017, 1135
AvaII GGWCC 2 cut(s) 133, 165
AvrII CCTAGG 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 1119
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 7 cut(s) 205, 232, 436, 628, 634, 825, 1034
BcnI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
BfaI CTAG 3 cut(s) 56, 468, 965
BisI GCNGC 4 cut(s) 12, 15, 63, 1055
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 4 cut(s) 13, 16, 64, 1056
Bme1390I CCNGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
Bme18I GGWCC 2 cut(s) 133, 165
BmeT110I CYCGRG 2 cut(s) 1017, 1135
BmgT120I GGNCC 2 cut(s) 133, 165
BmiI GGNNCC 2 cut(s) 53, 167
BmrFI CCNGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
BmsI GCATC 2 cut(s) 1081, 1144
BpiI GAAGAC 1 cut(s) 1119
BplI GAGNNNNNCTC 2 cut(s) 1240, 1272
BpmI CTGGAG 2 cut(s) 149, 977
Bpu10I CCTNAGC 1 cut(s) 371
BpuMI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
BsaJI CCNNGG 6 cut(s) 55, 1017, 1018, 1092, 1135, 1136
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 8 cut(s) 248, 278, 374, 404, 521, 551, 776, 806
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 175, 916, 1000
Bse3DI GCAATG 1 cut(s) 1164
BseAI TCCGGA 1 cut(s) 162
BseDI CCNNGG 6 cut(s) 55, 1017, 1018, 1092, 1135, 1136
BseGI GGATG 3 cut(s) 836, 1045, 1159
BseLI CCNNNNNNNGG 4 cut(s) 61, 175, 916, 1000
BseMI GCAATG 1 cut(s) 1164
BseMII CTCAG 1 cut(s) 689
BseXI GCAGC 1 cut(s) 1066
Bsh1236I CGCG 2 cut(s) 62, 192
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 2 cut(s) 1017, 1135
BsiSI CCGG 5 cut(s) 151, 163, 169, 1018, 1136
BslI CCNNNNNNNGG 4 cut(s) 61, 175, 916, 1000
BsmI GAATGC 1 cut(s) 985
BsoBI CYCGRG 2 cut(s) 1017, 1135
Bsp1286I GDGCHC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 3 cut(s) 187, 979, 1029
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 7 cut(s) 11, 14, 17, 62, 206, 292, 1271
BspCNI CTCAG 1 cut(s) 690
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 2 cut(s) 62, 192
BspLI GGNNCC 2 cut(s) 53, 167
BspPI GGATC 2 cut(s) 195, 987
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 1164
BssECI CCNNGG 6 cut(s) 55, 1017, 1018, 1092, 1135, 1136
BssMI GATC 3 cut(s) 187, 979, 1029
BssT1I CCWWGG 2 cut(s) 55, 1092
Bst4CI ACNGT 2 cut(s) 112, 1107
Bst6I CTCTTC 3 cut(s) 596, 1039, 1073
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 371, 698
BstDSI CCRYGG 1 cut(s) 1092
BstENI CCTNNNNNAGG 1 cut(s) 914
BstF5I GGATG 3 cut(s) 836, 1045, 1159
BstFNI CGCG 2 cut(s) 62, 192
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 190, 982, 1032
BstMBI GATC 3 cut(s) 187, 979, 1029
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 6 cut(s) 149, 167, 1016, 1017, 1134, 1135
BstUI CGCG 2 cut(s) 62, 192
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 1 cut(s) 1119
BstX2I RGATCY 1 cut(s) 979
BstYI RGATCY 1 cut(s) 979
BtgI CCRYGG 1 cut(s) 1092
BtsCI GGATG 3 cut(s) 836, 1045, 1159
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 133, 165
Cfr9I CCCGGG 2 cut(s) 1017, 1135
Csp6I GTAC 2 cut(s) 1004, 1098
CviAII CATG 3 cut(s) 452, 1063, 1093
CviQI GTAC 2 cut(s) 1004, 1098
DdeI CTNAG 2 cut(s) 371, 698
DpnI GATC 3 cut(s) 189, 981, 1031
DpnII GATC 3 cut(s) 187, 979, 1029
Eam1104I CTCTTC 3 cut(s) 596, 1039, 1073
EarI CTCTTC 3 cut(s) 596, 1039, 1073
EciI GGCGGA 2 cut(s) 32, 221
Eco130I CCWWGG 2 cut(s) 55, 1092
Eco47I GGWCC 2 cut(s) 133, 165
Eco57I CTGAAG 5 cut(s) 122, 254, 791, 1097, 1113
Eco88I CYCGRG 2 cut(s) 1017, 1135
EcoNI CCTNNNNNAGG 1 cut(s) 914
EcoT14I CCWWGG 2 cut(s) 55, 1092
ErhI CCWWGG 2 cut(s) 55, 1092
FaeI CATG 3 cut(s) 455, 1066, 1096
FaiI YATR 5 cut(s) 393, 453, 1064, 1094, 1173
FatI CATG 3 cut(s) 451, 1062, 1092
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 4 cut(s) 12, 15, 63, 1055
FokI GGATG 3 cut(s) 843, 1052, 1166
Fsp4HI GCNGC 4 cut(s) 12, 15, 63, 1055
FspBI CTAG 3 cut(s) 56, 468, 965
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 12, 15, 63, 1055
GsuI CTGGAG 2 cut(s) 149, 977
HapII CCGG 5 cut(s) 151, 163, 169, 1018, 1136
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 455, 1066, 1096
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 87
HpaII CCGG 5 cut(s) 151, 163, 169, 1018, 1136
HphI GGTGA 4 cut(s) 256, 514, 649, 655
Hpy166II GTNNAC 2 cut(s) 108, 147
Hpy188I TCNGA 4 cut(s) 37, 102, 1077, 1132
Hpy188III TCNNGA 2 cut(s) 163, 994
Hpy8I GTNNAC 2 cut(s) 108, 147
Hpy99I CGWCG 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 112, 1107
HpyCH4V TGCA 4 cut(s) 985, 1054, 1157, 1162
HpyF3I CTNAG 2 cut(s) 371, 698
Hsp92II CATG 3 cut(s) 455, 1066, 1096
HspAI GCGC 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 187, 979, 1029
LmnI GCTCC 7 cut(s) 51, 124, 165, 289, 367, 820, 883
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 2 cut(s) 1081, 1144
MaeI CTAG 3 cut(s) 56, 468, 965
MaeIII GTNAC 1 cut(s) 960
MalI GATC 3 cut(s) 189, 981, 1031
MbiI CCGCTC 1 cut(s) 292
MboI GATC 3 cut(s) 187, 979, 1029
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 4 cut(s) 569, 869, 1083, 1199
MlyI GAGTC 4 cut(s) 80, 152, 341, 1133
MmeI TCCRAC 1 cut(s) 825
MroI TCCGGA 1 cut(s) 162
MroXI GAANNNNTTC 2 cut(s) 758, 1087
MseI TTAA 1 cut(s) 1119
MspI CCGG 5 cut(s) 151, 163, 169, 1018, 1136
MspR9I CCNGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 2 cut(s) 62, 192
NciI CCSGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
NcoI CCATGG 1 cut(s) 1092
NdeII GATC 3 cut(s) 187, 979, 1029
NlaIII CATG 3 cut(s) 455, 1066, 1096
NlaIV GGNNCC 2 cut(s) 53, 167
NspI RCATGY 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 2 cut(s) 758, 1087
PfeI GAWTC 8 cut(s) 97, 848, 895, 944, 1088, 1114, 1251, 1267
PkrI GCNGC 4 cut(s) 13, 16, 64, 1056
PleI GAGTC 4 cut(s) 79, 151, 340, 1132
PpsI GAGTC 4 cut(s) 79, 151, 340, 1132
PspN4I GGNNCC 2 cut(s) 53, 167
PspPI GGNCC 2 cut(s) 133, 165
PsuI RGATCY 1 cut(s) 979
RsaI GTAC 2 cut(s) 1005, 1099
RsaNI GTAC 2 cut(s) 1004, 1098
SalI GTCGAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 1119
SatI GCNGC 4 cut(s) 12, 15, 63, 1055
Sau3AI GATC 3 cut(s) 187, 979, 1029
Sau96I GGNCC 2 cut(s) 133, 165
SchI GAGTC 4 cut(s) 80, 152, 341, 1133
ScrFI CCNGG 6 cut(s) 151, 169, 1018, 1019, 1136, 1137
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 2 cut(s) 1081, 1144
SinI GGWCC 2 cut(s) 133, 165
SmaI CCCGGG 2 cut(s) 1019, 1137
Sse9I AATT 4 cut(s) 569, 869, 1083, 1199
SsiI CCGC 7 cut(s) 11, 14, 17, 62, 206, 292, 1271
SspMI CTAG 3 cut(s) 56, 468, 965
StyD4I CCNGG 6 cut(s) 149, 167, 1016, 1017, 1134, 1135
StyI CCWWGG 2 cut(s) 55, 1092
TaaI ACNGT 2 cut(s) 112, 1107
TaqI TCGA 7 cut(s) 95, 141, 146, 174, 276, 716, 851
TasI AATT 4 cut(s) 569, 869, 1083, 1199
TauI GCSGC 3 cut(s) 14, 17, 65
TfiI GAWTC 8 cut(s) 97, 848, 895, 944, 1088, 1114, 1251, 1267
Tru1I TTAA 1 cut(s) 1119
Tru9I TTAA 1 cut(s) 1119
TseI GCWGC 1 cut(s) 1054
TspDTI ATGAA 3 cut(s) 692, 1051, 1280
TspMI CCCGGG 2 cut(s) 1017, 1135
VpaK11BI GGWCC 2 cut(s) 133, 165
XagI CCTNNNNNAGG 1 cut(s) 914
XceI RCATGY 1 cut(s) 455
XmaI CCCGGG 2 cut(s) 1017, 1135
XmaJI CCTAGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 2 cut(s) 758, 1087
XspI CTAG 3 cut(s) 56, 468, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.